Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0012244

Physical Location & Seq

Genomic Coordinates Reverse (-)

27111757 .. 27113680

Gene Structure 1924 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G020570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGCAGGTAAAGTTGCTAAGTCGGTTGCGTTCTCCATATTTTCTTTCGTTGCTTGGGTATTGTTCAGATAACAGTCGTAAGCTGTTGGTGTATGAGTTTATGGCAAATGGTGGATTGCAGGAACATATGTATCCTGTCAGTGGTGGTCCTAATGCCCTCTCCACAAACTTAGACTGGGAAACCCGGTTGAGAATAGCTCTTGAAGCTGCGAAAGGTTTGGAGTATCTCCATGAACAAGTTAGTCCTCCAGTGATACACAGAGATTTTAAGAGCAGCAACATTCTCTTGGACAAAACATTCCATGCCAAAGTTTCTGATTTCGGATTGGCCAAACTTGGATCTGACAAAGCTGGAGGTTATGTTTCCACCAGAGTGTTGGGCACACAGGGATATGTTGCCCCTGAGTATGCATTAACAGGGCATCTGACAACTAAATCAGATGTGTACAGTTATGGGGTTGTGCTGTTGGAATTGCTAACAGGCAGAGTTCCAGTTGATATGAAGAGACCCCCTGGAGAAGGTGTTCTCGTTTCTTGGGCTTTGCCGCATCTGACAGATAGGGAGCAGGTTGAACAGATCATGGATCCTGCACTGGAGGGTCAATACTCGATGAAGGAGGTCATTCAGGTGGCAGCAATTGTAAATATACCTGTGCTGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009987 GO:0010065 GO:0010068 GO:0010154 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0036211 GO:0038023 GO:0042335 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0048316 GO:0048507 GO:0048508 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0061458 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

220

Amino Acids

24.32

Weight (kDa)

6.3

Isoelectric Point (pI)

33.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	3 - 166	2.3e-32	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	3 - 166	1.9e-31	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012244)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58690
fragaria_vesca	FvH4_6g27620
malus_domestica	MD17G1265400.v1.1
prunus_persica	Prupe.3G115500_v2.0.a1 Prupe.3G115500_v2.0.a1
pyrus_communis	pycom17g26510
rosa_chinensis	RchiOBHm_Chr2g0130301
rosa_laevigata	RLG00000019133
rosa_multiflora	Rmu_sc0001167.1_g000081 Rmu_sc0001336.1_g000074 Rmu_sc0029344.1_g000001
rosa_roxburghii	Rroxscaffold_2G00114050
rosa_rugosa	Rorug01G0180700 Rorug01G0180800 Rorug02G0291400
rosa_samantha	Rh2CG330200 Rh2DG369400
rosa_wichuraiana	Rw2G027620 Rw5G020570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	556
AciI	CCGC	1 cut(s)	545
AclWI	GGATC	3 cut(s)	346, 578, 591
AcoI	YGGCCR	1 cut(s)	327
AfaI	GTAC	1 cut(s)	446
AfiI	CCNNNNNNNGG	2 cut(s)	140, 518
AgsI	TTSAA	2 cut(s)	203, 572
AjnI	CCWGG	1 cut(s)	511
AleI	CACNNNNGTG	1 cut(s)	371
AloI	GAACNNNNNNTCC	2 cut(s)	507, 539
AluBI	AGCT	4 cut(s)	82, 197, 206, 350
AluI	AGCT	4 cut(s)	82, 197, 206, 350
Alw26I	GTCTC	1 cut(s)	499
AlwI	GGATC	3 cut(s)	346, 578, 591
AoxI	GGCC	1 cut(s)	327
ApeKI	GCWGC	3 cut(s)	206, 273, 632
Asp700I	GAANNNNTTC	1 cut(s)	522
AspS9I	GGNCC	1 cut(s)	146
AsuC2I	CCSGG	1 cut(s)	184
AvaII	GGWCC	1 cut(s)	146
BaeGI	GKGCMC	1 cut(s)	383
BaeI	ACNNNNGTAYC	2 cut(s)	113, 146
BalI	TGGCCA	1 cut(s)	329
BamHI	GGATCC	1 cut(s)	583
BbvI	GCAGC	3 cut(s)	193, 285, 644
BciT130I	CCWGG	1 cut(s)	513
BciVI	GTATCC	1 cut(s)	141
BcnI	CCSGG	1 cut(s)	184
BcoDI	GTCTC	1 cut(s)	499
BfuAI	ACCTGC	1 cut(s)	556
BfuI	GTATCC	1 cut(s)	141
BisI	GCNGC	4 cut(s)	207, 274, 545, 633
BlsI	GCNGC	4 cut(s)	208, 275, 546, 634
Bme1390I	CCNGG	2 cut(s)	184, 513
Bme18I	GGWCC	1 cut(s)	146
BmgT120I	GGNCC	1 cut(s)	146
BmiI	GGNNCC	1 cut(s)	585
BmrFI	CCNGG	2 cut(s)	184, 513
BmrI	ACTGGG	1 cut(s)	184
BmsI	GCATC	2 cut(s)	430, 556
BmuI	ACTGGG	1 cut(s)	184
BplI	GAGNNNNNCTC	2 cut(s)	181, 213
BpmI	CTGGAG	4 cut(s)	231, 372, 534, 614
BpuMI	CCSGG	1 cut(s)	184
BsaI	GGTCTC	1 cut(s)	499
BsaJI	CCNNGG	1 cut(s)	511
BsaXI	ACNNNNNCTCC	4 cut(s)	345, 375, 507, 537
Bsc4I	CCNNNNNNNGG	2 cut(s)	140, 518
Bse1I	ACTGG	4 cut(s)	179, 248, 491, 597
BseBI	CCWGG	1 cut(s)	513
BseDI	CCNNGG	1 cut(s)	511
BseLI	CCNNNNNNNGG	2 cut(s)	140, 518
BseMII	CTCAG	1 cut(s)	393
BseNI	ACTGG	4 cut(s)	179, 248, 491, 597
BseSI	GKGCMC	1 cut(s)	383
BseXI	GCAGC	3 cut(s)	193, 285, 644
BsgI	GTGCAG	1 cut(s)	573
BshFI	GGCC	1 cut(s)	329
BsiSI	CCGG	1 cut(s)	184
BslI	CCNNNNNNNGG	2 cut(s)	140, 518
BsmAI	GTCTC	1 cut(s)	499
BsnI	GGCC	1 cut(s)	329
Bso31I	GGTCTC	1 cut(s)	499
Bsp1286I	GDGCHC	1 cut(s)	383
Bsp1407I	TGTACA	1 cut(s)	444
Bsp143I	GATC	3 cut(s)	338, 576, 583
BspACI	CCGC	1 cut(s)	545
BspANI	GGCC	1 cut(s)	329
BspCNI	CTCAG	1 cut(s)	394
BspLI	GGNNCC	1 cut(s)	585
BspMI	ACCTGC	1 cut(s)	556
BspPI	GGATC	3 cut(s)	346, 578, 591
BspTNI	GGTCTC	1 cut(s)	499
BsrGI	TGTACA	1 cut(s)	444
BsrI	ACTGG	4 cut(s)	179, 248, 491, 597
BssECI	CCNNGG	1 cut(s)	511
BssMI	GATC	3 cut(s)	338, 576, 583
Bst2UI	CCWGG	1 cut(s)	513
Bst4CI	ACNGT	2 cut(s)	74, 449
Bst6I	CTCTTC	1 cut(s)	497
BstAUI	TGTACA	1 cut(s)	444
BstDEI	CTNAG	3 cut(s)	17, 169, 402
BstENI	CCTNNNNNAGG	1 cut(s)	516
BstKTI	GATC	3 cut(s)	341, 579, 586
BstMAI	GTCTC	1 cut(s)	499
BstMBI	GATC	3 cut(s)	338, 576, 583
BstMWI	GCNNNNNNNGC	1 cut(s)	203
BstNI	CCWGG	1 cut(s)	513
BstSCI	CCNGG	2 cut(s)	182, 511
BstSLI	GKGCMC	1 cut(s)	383
BstV1I	GCAGC	3 cut(s)	193, 285, 644
BstX2I	RGATCY	2 cut(s)	338, 583
BstXI	CCANNNNNNTGG	1 cut(s)	376
BstYI	RGATCY	2 cut(s)	338, 583
BsuI	GTATCC	1 cut(s)	141
BsuRI	GGCC	1 cut(s)	329
BtsIMutI	CAGTG	3 cut(s)	145, 255, 590
BveI	ACCTGC	1 cut(s)	556
Cfr13I	GGNCC	1 cut(s)	146
Csp6I	GTAC	1 cut(s)	445
CviAII	CATG	3 cut(s)	230, 302, 580
CviJI	RGCY	6 cut(s)	82, 197, 206, 329, 350, 539
CviKI_1	RGCY	6 cut(s)	82, 197, 206, 329, 350, 539
CviQI	GTAC	1 cut(s)	445
DdeI	CTNAG	3 cut(s)	17, 169, 402
DpnI	GATC	3 cut(s)	340, 578, 585
DpnII	GATC	3 cut(s)	338, 576, 583
EaeI	YGGCCR	1 cut(s)	327
Eam1104I	CTCTTC	1 cut(s)	497
EarI	CTCTTC	1 cut(s)	497
Eco31I	GGTCTC	1 cut(s)	499
Eco47I	GGWCC	1 cut(s)	146
EcoNI	CCTNNNNNAGG	1 cut(s)	516
EcoRII	CCWGG	1 cut(s)	511
EcoT22I	ATGCAT	1 cut(s)	412
FaeI	CATG	3 cut(s)	233, 305, 583
FatI	CATG	3 cut(s)	229, 301, 579
FauNDI	CATATG	1 cut(s)	126
Fnu4HI	GCNGC	4 cut(s)	207, 274, 545, 633
Fsp4HI	GCNGC	4 cut(s)	207, 274, 545, 633
GluI	GCNGC	4 cut(s)	207, 274, 545, 633
GsuI	CTGGAG	4 cut(s)	231, 372, 534, 614
HaeIII	GGCC	1 cut(s)	329
HapII	CCGG	1 cut(s)	184
Hin1II	CATG	3 cut(s)	233, 305, 583
HpaII	CCGG	1 cut(s)	184
Hpy166II	GTNNAC	1 cut(s)	445
Hpy188I	TCNGA	7 cut(s)	67, 316, 323, 343, 426, 439, 552
Hpy188III	TCNNGA	1 cut(s)	200
Hpy8I	GTNNAC	1 cut(s)	445
HpyAV	CCTTC	2 cut(s)	512, 607
HpyCH4III	ACNGT	2 cut(s)	74, 449
HpyCH4V	TGCA	4 cut(s)	4, 118, 410, 590
HpyF10VI	GCNNNNNNNGC	1 cut(s)	203
HpyF3I	CTNAG	3 cut(s)	17, 169, 402
Hsp92II	CATG	3 cut(s)	233, 305, 583
Kzo9I	GATC	3 cut(s)	338, 576, 583
LmnI	GCTCC	1 cut(s)	562
Lsp1109I	GCAGC	3 cut(s)	193, 285, 644
LweI	GCATC	2 cut(s)	430, 556
MalI	GATC	3 cut(s)	340, 578, 585
MboI	GATC	3 cut(s)	338, 576, 583
MboII	GAAGA	1 cut(s)	514
MfeI	CAATTG	1 cut(s)	636
MflI	RGATCY	2 cut(s)	338, 583
MhlI	GDGCHC	1 cut(s)	383
MlsI	TGGCCA	1 cut(s)	329
MluCI	AATT	2 cut(s)	470, 636
MluNI	TGGCCA	1 cut(s)	329
MmeI	TCCRAC	1 cut(s)	447
MnlI	CCTC	5 cut(s)	167, 255, 347, 589, 610
Mox20I	TGGCCA	1 cut(s)	329
Mph1103I	ATGCAT	1 cut(s)	412
MroXI	GAANNNNTTC	1 cut(s)	522
MscI	TGGCCA	1 cut(s)	329
MseI	TTAA	2 cut(s)	267, 413
MslI	CAYNNNNRTG	2 cut(s)	371, 626
Msp20I	TGGCCA	1 cut(s)	329
MspI	CCGG	1 cut(s)	184
MspR9I	CCNGG	2 cut(s)	184, 513
MunI	CAATTG	1 cut(s)	636
MvaI	CCWGG	1 cut(s)	513
MwoI	GCNNNNNNNGC	1 cut(s)	203
NciI	CCSGG	1 cut(s)	184
NdeI	CATATG	1 cut(s)	126
NdeII	GATC	3 cut(s)	338, 576, 583
NlaIII	CATG	3 cut(s)	233, 305, 583
NlaIV	GGNNCC	1 cut(s)	585
NsiI	ATGCAT	1 cut(s)	412
OliI	CACNNNNGTG	1 cut(s)	371
PdmI	GAANNNNTTC	1 cut(s)	522
PkrI	GCNGC	4 cut(s)	208, 275, 546, 634
Psp6I	CCWGG	1 cut(s)	511
PspGI	CCWGG	1 cut(s)	511
PspN4I	GGNNCC	1 cut(s)	585
PspPI	GGNCC	1 cut(s)	146
PsuI	RGATCY	2 cut(s)	338, 583
RsaI	GTAC	1 cut(s)	446
RsaNI	GTAC	1 cut(s)	445
RseI	CAYNNNNRTG	2 cut(s)	371, 626
SaqAI	TTAA	2 cut(s)	267, 413
SatI	GCNGC	4 cut(s)	207, 274, 545, 633
Sau3AI	GATC	3 cut(s)	338, 576, 583
Sau96I	GGNCC	1 cut(s)	146
ScrFI	CCNGG	2 cut(s)	184, 513
SduI	GDGCHC	1 cut(s)	383
SfaNI	GCATC	2 cut(s)	430, 556
SinI	GGWCC	1 cut(s)	146
SmiMI	CAYNNNNRTG	2 cut(s)	371, 626
Sse9I	AATT	2 cut(s)	470, 636
SsiI	CCGC	1 cut(s)	545
StyD4I	CCNGG	2 cut(s)	182, 511
TaaI	ACNGT	2 cut(s)	74, 449
TaqI	TCGA	1 cut(s)	608
TasI	AATT	2 cut(s)	470, 636
TatI	WGTACW	1 cut(s)	444
TauI	GCSGC	1 cut(s)	547
Tru1I	TTAA	2 cut(s)	267, 413
Tru9I	TTAA	2 cut(s)	267, 413
TscAI	CASTG	3 cut(s)	145, 255, 597
TseI	GCWGC	3 cut(s)	206, 273, 632
TspDTI	ATGAA	3 cut(s)	246, 515, 626
TspRI	CASTG	3 cut(s)	145, 255, 597
VpaK11BI	GGWCC	1 cut(s)	146
XagI	CCTNNNNNAGG	1 cut(s)	516
XcmI	CCANNNNNNNNNTGG	1 cut(s)	373
XmnI	GAANNNNTTC	1 cut(s)	522
Zsp2I	ATGCAT	1 cut(s)	412

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.