Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0012244

Physical Location & Seq

Genomic Coordinates Reverse (-)

9755883 .. 9759174

Gene Structure 3292 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G115500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGGAGGAAGAGGATGAGTATAGAAGGAAGGAGCGCTTGGCATTGGTGATCATTGTGGTGCTTGCTTCACTGGCCGTGGCTTCCTTACTCGTCGCCTTCAGCTACTACTGCTACATTCGCAACAAGGTCGCCAAGCGCTTCGAGAACCACAAGGGGTTTGGGAATGAGGACAAAGGTGCTTTTTCAAATCTACAAGTTGCTTCCAGTAAAGGACTTCAGGTCTTCACCTTCAAGCAACTACATTCTGCTACTGGTGGTTTCAGCAAGTCAAATGTGGTTGGCAAAGGAGGATTTGGGTTAGTGTACCGAGGTGTTCTCCATGATGGGAGGAAAGTTGCAATTAAGTTTATGGACGAAGCAGGAAAGCAGGGAGCAGAGGAATTTAAAATGGAGGTGGAGTTGCTAAGTCGGCTGTGTTCTCCATATTTGTTGGCCCTGCTTGGGTATTGCTCAGATAACAATCACAAATTGTTGGTATATGAGTTCATGGAAAATGGTGGTTTGCAGGAACATTTGTATCCTCGGAGTGGTCCTAATGCTCCCTCCATGAAGTTAGACTGGGAAACTCGGTTGAGAATAGCTCTTGAAGCTGCGAAGGGTTTGGAGTATCTCCATGAACATATTAGTCCTCCCGTGATTCACAGAGATTTTAAGAGCAGTAACATTCTCTTGGACAAATATTTTCATGCCAAAGTTTCTGATTTCGGATTGGCCAAGCTTGGATCTGACAAGGCTGGAGGCTATGTTTCCACCAGAGTATTGGGTACACAGGGATATGTTGCCCCAGAGTATGCGTTAACAGGGCATCTGACAACTAAATCAGATGTGTACAGTTATGGGGTTGTGCTTTTGGAGTTGCTTACAGGCAGAGTTCCAGTTGATATGAAGAGACCTTCTGGAGAAGGTGTTCTTGTTTCTTGGGCTTTGCCTCAGCTGACAGATAGGGAGCAGGTTGTTCAGATCATGGATCCTGCATTGGAGGGTCAGTACTCATTGAAGGAGGTCATTCAGGTGGCAGCAATTGCTGCGATGTGCGTTCAACCCGAGGCAGATTACAGGCCACTGATGGCAGATGTTGTGCAATCACTGGTCCCACTTGTGAAGATTCACAGGTCAACTTCAAAGGTAGGCAGCTCTTCTAGCTTTCATGCAACAAAGTCACCAACACCGCAGAGTAGTAAAGCATGTCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009987 GO:0010065 GO:0010068 GO:0010154 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0036211 GO:0038023 GO:0042335 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0048316 GO:0048507 GO:0048508 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0061458 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

398

Amino Acids

43.77

Weight (kDa)

8.58

Isoelectric Point (pI)

37.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012244)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58690
fragaria_vesca	FvH4_6g27620
malus_domestica	MD17G1265400.v1.1
prunus_persica	Prupe.3G115500_v2.0.a1 Prupe.3G115500_v2.0.a1
pyrus_communis	pycom17g26510
rosa_chinensis	RchiOBHm_Chr2g0130301
rosa_laevigata	RLG00000019133
rosa_multiflora	Rmu_sc0001167.1_g000081 Rmu_sc0001336.1_g000074 Rmu_sc0029344.1_g000001
rosa_roxburghii	Rroxscaffold_2G00114050
rosa_rugosa	Rorug01G0180700 Rorug01G0180800 Rorug02G0291400
rosa_samantha	Rh2CG330200 Rh2DG369400
rosa_wichuraiana	Rw2G027620 Rw5G020570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	940
AciI	CCGC	1 cut(s)	1169
AclWI	GGATC	3 cut(s)	730, 962, 975
AcoI	YGGCCR	2 cut(s)	72, 711
AcsI	RAATTY	1 cut(s)	380
AcuI	CTGAAG	2 cut(s)	82, 200
AfaI	GTAC	4 cut(s)	305, 766, 830, 989
AfeI	AGCGCT	2 cut(s)	35, 137
AfiI	CCNNNNNNNGG	2 cut(s)	441, 527
AgsI	TTSAA	6 cut(s)	186, 232, 587, 997, 1040, 1122
AhdI	GACNNNNNGTC	1 cut(s)	218
AjuI	GAANNNNNNNTTGG	2 cut(s)	20, 52
AloI	GAACNNNNNNTCC	2 cut(s)	891, 923
AluBI	AGCT	7 cut(s)	102, 581, 590, 718, 934, 1134, 1143
AluI	AGCT	7 cut(s)	102, 581, 590, 718, 934, 1134, 1143
Alw26I	GTCTC	1 cut(s)	883
AlwI	GGATC	3 cut(s)	730, 962, 975
Ama87I	CYCGRG	1 cut(s)	1043
Aor51HI	AGCGCT	2 cut(s)	35, 137
AoxI	GGCC	4 cut(s)	72, 432, 711, 1058
ApeKI	GCWGC	4 cut(s)	590, 1016, 1025, 1131
ApoI	RAATTY	1 cut(s)	380
Asp700I	GAANNNNTTC	1 cut(s)	906
AspLEI	GCGC	2 cut(s)	36, 138
AspS9I	GGNCC	3 cut(s)	433, 530, 1090
AsuHPI	GGTGA	3 cut(s)	58, 217, 1152
AvaI	CYCGRG	1 cut(s)	1043
AvaII	GGWCC	2 cut(s)	530, 1090
BaeI	ACNNNNGTAYC	2 cut(s)	500, 533
BalI	TGGCCA	1 cut(s)	713
BamHI	GGATCC	1 cut(s)	967
BbsI	GAAGAC	1 cut(s)	214
BbvCI	CCTCAGC	1 cut(s)	930
BbvI	GCAGC	4 cut(s)	577, 1012, 1028, 1143
BccI	CCATC	2 cut(s)	317, 1060
BceAI	ACGGC	1 cut(s)	59
BcgI	CGANNNNNNTGC	2 cut(s)	109, 143
BciVI	GTATCC	1 cut(s)	528
BclI	TGATCA	1 cut(s)	48
BcoDI	GTCTC	1 cut(s)	883
BfaI	CTAG	1 cut(s)	1140
BfoI	RGCGCY	2 cut(s)	37, 139
BfuAI	ACCTGC	1 cut(s)	940
BfuI	GTATCC	1 cut(s)	528
BisI	GCNGC	4 cut(s)	591, 1017, 1026, 1132
BlsI	GCNGC	4 cut(s)	592, 1018, 1027, 1133
BmcAI	AGTACT	1 cut(s)	989
Bme18I	GGWCC	2 cut(s)	530, 1090
BmeRI	GACNNNNNGTC	1 cut(s)	218
BmeT110I	CYCGRG	1 cut(s)	1043
BmgT120I	GGNCC	3 cut(s)	433, 530, 1090
BmiI	GGNNCC	2 cut(s)	969, 1092
BmrI	ACTGGG	1 cut(s)	568
BmsI	GCATC	1 cut(s)	814
BmuI	ACTGGG	1 cut(s)	568
BpiI	GAAGAC	1 cut(s)	214
BplI	GAGNNNNNCTC	4 cut(s)	300, 332, 565, 597
BpmI	CTGGAG	2 cut(s)	756, 918
Bpu10I	CCTNAGC	1 cut(s)	930
BsaBI	GATNNNNATC	1 cut(s)	459
BsaI	GGTCTC	1 cut(s)	883
BsaJI	CCNNGG	4 cut(s)	75, 307, 521, 1044
BsaXI	ACNNNNNCTCC	8 cut(s)	383, 413, 729, 759, 891, 921, 971, 1001
Bsc4I	CCNNNNNNNGG	2 cut(s)	441, 527
Bse1I	ACTGG	6 cut(s)	75, 204, 256, 563, 875, 1092
Bse8I	GATNNNNATC	1 cut(s)	459
BseDI	CCNNGG	4 cut(s)	75, 307, 521, 1044
BseGI	GGATG	1 cut(s)	19
BseJI	GATNNNNATC	1 cut(s)	459
BseLI	CCNNNNNNNGG	2 cut(s)	441, 527
BseMII	CTCAG	2 cut(s)	465, 944
BseNI	ACTGG	6 cut(s)	75, 204, 256, 563, 875, 1092
BseXI	GCAGC	4 cut(s)	577, 1012, 1028, 1143
BshFI	GGCC	4 cut(s)	74, 434, 713, 1060
BsiHKCI	CYCGRG	1 cut(s)	1043
BslFI	GGGAC	1 cut(s)	1076
BslI	CCNNNNNNNGG	2 cut(s)	441, 527
BsmAI	GTCTC	1 cut(s)	883
BsmFI	GGGAC	1 cut(s)	1076
BsnI	GGCC	4 cut(s)	74, 434, 713, 1060
Bso31I	GGTCTC	1 cut(s)	883
BsoBI	CYCGRG	1 cut(s)	1043
Bsp1407I	TGTACA	1 cut(s)	828
Bsp143I	GATC	4 cut(s)	48, 722, 960, 967
BspACI	CCGC	1 cut(s)	1169
BspANI	GGCC	4 cut(s)	74, 434, 713, 1060
BspCNI	CTCAG	2 cut(s)	464, 943
BspLI	GGNNCC	2 cut(s)	969, 1092
BspMI	ACCTGC	1 cut(s)	940
BspPI	GGATC	3 cut(s)	730, 962, 975
BspQI	GCTCTTC	1 cut(s)	1141
BspTNI	GGTCTC	1 cut(s)	883
BsrGI	TGTACA	1 cut(s)	828
BsrI	ACTGG	6 cut(s)	75, 204, 256, 563, 875, 1092
BssECI	CCNNGG	4 cut(s)	75, 307, 521, 1044
BssMI	GATC	4 cut(s)	48, 722, 960, 967
Bst4CI	ACNGT	1 cut(s)	833
Bst6I	CTCTTC	3 cut(s)	3, 881, 1141
BstAPI	GCANNNNNTGC	2 cut(s)	1022, 1025
BstAUI	TGTACA	1 cut(s)	828
BstC8I	GCNNGC	1 cut(s)	63
BstDEI	CTNAG	3 cut(s)	404, 451, 930
BstDSI	CCRYGG	1 cut(s)	75
BstF5I	GGATG	1 cut(s)	19
BstH2I	RGCGCY	2 cut(s)	37, 139
BstHHI	GCGC	2 cut(s)	36, 138
BstKTI	GATC	4 cut(s)	51, 725, 963, 970
BstMAI	GTCTC	1 cut(s)	883
BstMBI	GATC	4 cut(s)	48, 722, 960, 967
BstMWI	GCNNNNNNNGC	8 cut(s)	71, 108, 117, 409, 587, 1022, 1025, 1140
BstNSI	RCATGY	1 cut(s)	1188
BstV1I	GCAGC	4 cut(s)	577, 1012, 1028, 1143
BstV2I	GAAGAC	1 cut(s)	214
BstX2I	RGATCY	2 cut(s)	722, 967
BstXI	CCANNNNNNTGG	1 cut(s)	760
BstYI	RGATCY	2 cut(s)	722, 967
BsuI	GTATCC	1 cut(s)	528
BsuRI	GGCC	4 cut(s)	74, 434, 713, 1060
BtgI	CCRYGG	1 cut(s)	75
BtgZI	GCGATG	1 cut(s)	1043
BtsCI	GGATG	1 cut(s)	19
BtsIMutI	CAGTG	3 cut(s)	68, 1061, 1085
BveI	ACCTGC	1 cut(s)	940
Cac8I	GCNNGC	1 cut(s)	63
CfoI	GCGC	2 cut(s)	36, 138
Cfr13I	GGNCC	3 cut(s)	433, 530, 1090
Csp6I	GTAC	4 cut(s)	304, 765, 829, 988
CviAII	CATG	8 cut(s)	320, 487, 547, 614, 686, 964, 1148, 1185
CviQI	GTAC	4 cut(s)	304, 765, 829, 988
DdeI	CTNAG	3 cut(s)	404, 451, 930
DpnI	GATC	4 cut(s)	50, 724, 962, 969
DpnII	GATC	4 cut(s)	48, 722, 960, 967
DraI	TTTAAA	1 cut(s)	385
DriI	GACNNNNNGTC	1 cut(s)	218
EaeI	YGGCCR	2 cut(s)	72, 711
Eam1104I	CTCTTC	3 cut(s)	3, 881, 1141
Eam1105I	GACNNNNNGTC	1 cut(s)	218
EarI	CTCTTC	3 cut(s)	3, 881, 1141
Eco31I	GGTCTC	1 cut(s)	883
Eco47I	GGWCC	2 cut(s)	530, 1090
Eco47III	AGCGCT	2 cut(s)	35, 137
Eco57I	CTGAAG	2 cut(s)	82, 200
Eco88I	CYCGRG	1 cut(s)	1043
FaeI	CATG	8 cut(s)	323, 490, 550, 617, 689, 967, 1151, 1188
FalI	AAGNNNNNCTT	4 cut(s)	20, 52, 894, 926
FaqI	GGGAC	1 cut(s)	1076
FatI	CATG	8 cut(s)	319, 486, 546, 613, 685, 963, 1147, 1184
FbaI	TGATCA	1 cut(s)	48
Fnu4HI	GCNGC	4 cut(s)	591, 1017, 1026, 1132
FokI	GGATG	1 cut(s)	26
Fsp4HI	GCNGC	4 cut(s)	591, 1017, 1026, 1132
FspBI	CTAG	1 cut(s)	1140
GlaI	GCGC	2 cut(s)	35, 137
GluI	GCNGC	4 cut(s)	591, 1017, 1026, 1132
GsuI	CTGGAG	2 cut(s)	756, 918
HaeII	RGCGCY	2 cut(s)	37, 139
HaeIII	GGCC	4 cut(s)	74, 434, 713, 1060
HhaI	GCGC	2 cut(s)	36, 138
Hin1II	CATG	8 cut(s)	323, 490, 550, 617, 689, 967, 1151, 1188
Hin6I	GCGC	2 cut(s)	34, 136
HinP1I	GCGC	2 cut(s)	34, 136
HincII	GTYRAC	2 cut(s)	798, 1116
HindII	GTYRAC	2 cut(s)	798, 1116
HindIII	AAGCTT	1 cut(s)	716
HinfI	GANTC	2 cut(s)	637, 1105
HpaI	GTTAAC	1 cut(s)	798
HphI	GGTGA	3 cut(s)	58, 217, 1152
Hpy166II	GTNNAC	5 cut(s)	304, 767, 798, 829, 1116
Hpy188I	TCNGA	8 cut(s)	454, 525, 700, 707, 727, 810, 823, 960
Hpy188III	TCNNGA	3 cut(s)	142, 584, 897
Hpy8I	GTNNAC	5 cut(s)	304, 767, 798, 829, 1116
Hpy99I	CGWCG	1 cut(s)	95
HpyAV	CCTTC	8 cut(s)	18, 22, 106, 238, 589, 896, 903, 991
HpyCH4III	ACNGT	1 cut(s)	833
HpyCH4V	TGCA	5 cut(s)	338, 505, 974, 1081, 1151
HpyF10VI	GCNNNNNNNGC	8 cut(s)	71, 108, 117, 409, 587, 1022, 1025, 1140
HpyF3I	CTNAG	3 cut(s)	404, 451, 930
Hsp92II	CATG	8 cut(s)	323, 490, 550, 617, 689, 967, 1151, 1188
HspAI	GCGC	2 cut(s)	34, 136
Ksp22I	TGATCA	1 cut(s)	48
KspAI	GTTAAC	1 cut(s)	798
Kzo9I	GATC	4 cut(s)	48, 722, 960, 967
LguI	GCTCTTC	1 cut(s)	1141
LmnI	GCTCC	4 cut(s)	31, 371, 544, 946
Lsp1109I	GCAGC	4 cut(s)	577, 1012, 1028, 1143
LweI	GCATC	1 cut(s)	814
MaeI	CTAG	1 cut(s)	1140
MaeIII	GTNAC	2 cut(s)	659, 1158
MalI	GATC	4 cut(s)	50, 724, 962, 969
MboI	GATC	4 cut(s)	48, 722, 960, 967
MboII	GAAGA	5 cut(s)	20, 214, 898, 1114, 1128
MfeI	CAATTG	1 cut(s)	1020
MflI	RGATCY	2 cut(s)	722, 967
MlsI	TGGCCA	1 cut(s)	713
MluCI	AATT	4 cut(s)	339, 380, 467, 1020
MluNI	TGGCCA	1 cut(s)	713
Mox20I	TGGCCA	1 cut(s)	713
MroXI	GAANNNNTTC	1 cut(s)	906
MscI	TGGCCA	1 cut(s)	713
MseI	TTAA	4 cut(s)	342, 384, 651, 797
MslI	CAYNNNNRTG	3 cut(s)	56, 1010, 1189
Msp20I	TGGCCA	1 cut(s)	713
MspA1I	CMGCKG	1 cut(s)	934
MunI	CAATTG	1 cut(s)	1020
MwoI	GCNNNNNNNGC	8 cut(s)	71, 108, 117, 409, 587, 1022, 1025, 1140
NdeII	GATC	4 cut(s)	48, 722, 960, 967
NlaIII	CATG	8 cut(s)	323, 490, 550, 617, 689, 967, 1151, 1188
NlaIV	GGNNCC	2 cut(s)	969, 1092
NmuCI	GTSAC	1 cut(s)	1158
NspI	RCATGY	1 cut(s)	1188
PciSI	GCTCTTC	1 cut(s)	1141
PdmI	GAANNNNTTC	1 cut(s)	906
PfeI	GAWTC	2 cut(s)	637, 1105
PkrI	GCNGC	4 cut(s)	592, 1018, 1027, 1133
PspN4I	GGNNCC	2 cut(s)	969, 1092
PspPI	GGNCC	3 cut(s)	433, 530, 1090
PsuI	RGATCY	2 cut(s)	722, 967
PvuII	CAGCTG	1 cut(s)	934
RsaI	GTAC	4 cut(s)	305, 766, 830, 989
RsaNI	GTAC	4 cut(s)	304, 765, 829, 988
RseI	CAYNNNNRTG	3 cut(s)	56, 1010, 1189
SapI	GCTCTTC	1 cut(s)	1141
SaqAI	TTAA	4 cut(s)	342, 384, 651, 797
SatI	GCNGC	4 cut(s)	591, 1017, 1026, 1132
Sau3AI	GATC	4 cut(s)	48, 722, 960, 967
Sau96I	GGNCC	3 cut(s)	433, 530, 1090
ScaI	AGTACT	1 cut(s)	989
SfaNI	GCATC	1 cut(s)	814
SinI	GGWCC	2 cut(s)	530, 1090
SmiMI	CAYNNNNRTG	3 cut(s)	56, 1010, 1189
Sse9I	AATT	4 cut(s)	339, 380, 467, 1020
SsiI	CCGC	1 cut(s)	1169
SspI	AATATT	1 cut(s)	680
SspMI	CTAG	1 cut(s)	1140
TaaI	ACNGT	1 cut(s)	833
TaqI	TCGA	1 cut(s)	141
TasI	AATT	4 cut(s)	339, 380, 467, 1020
TatI	WGTACW	2 cut(s)	828, 987
TfiI	GAWTC	2 cut(s)	637, 1105
Tru1I	TTAA	4 cut(s)	342, 384, 651, 797
Tru9I	TTAA	4 cut(s)	342, 384, 651, 797
TscAI	CASTG	3 cut(s)	75, 1068, 1092
TseFI	GTSAC	1 cut(s)	1158
TseI	GCWGC	4 cut(s)	590, 1016, 1025, 1131
Tsp45I	GTSAC	1 cut(s)	1158
TspDTI	ATGAA	6 cut(s)	475, 563, 630, 674, 899, 1136
TspRI	CASTG	3 cut(s)	75, 1068, 1092
VpaK11BI	GGWCC	2 cut(s)	530, 1090
XapI	RAATTY	1 cut(s)	380
XceI	RCATGY	1 cut(s)	1188
XcmI	CCANNNNNNNNNTGG	2 cut(s)	155, 757
XmnI	GAANNNNTTC	1 cut(s)	906
XspI	CTAG	1 cut(s)	1140
ZrmI	AGTACT	1 cut(s)	989

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.