Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0012244

Physical Location & Seq

Genomic Coordinates Forward (+)

52370330 .. 52375411

Gene Structure 5082 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG369400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGGAAGCAGAGGATGAGTACAGAAGGAAGGCCCGCGTGGCATTGGTGGTCATTGTGGTCCTCGCTTCCCTCGCCGTCGCTTCATTACTCGTCGCCTTTAGCTACTACTGCTACATCCGCAACAAGGTAGCCAAGCACCTCAACAACAACAAGAACAACAACAACAAGGGGGCTGACTTGGAGGGCAAAGGTGGTTTTCCAAATCCGAAAACAGCTGCGAGTGACGGAGTTCAGGTCTTCACGTTTAAGCAACTACATTCGGCGACTGGGGGTTTCAGCAAATCGAATGTGGTTGGGAAAGGCGGATTCGGGTTGGTGTACCGTGGGGTGCTGCATAATGGGAGGAAAGTTGCAATTAAGTTTATGGACCAAGCAGGAAAGCAGGGAGAAGAAGAGTTTGAAATGGAGGTGGAGTTGCTAAGTCGGTTGCGTTCTCCATATTTGCTTTCGTTGCTTGGGTATTGCTCAGATAACAGTCGTAAGCTGTTGGTGTATGAGTTTATGGCAAATGGTGGATTGCAGGAACATTTGTATCCTGTCAGTGGTGGTCCTAATGCCCTCTCCACAAACTTAGACTGGGAAACCCGGTTGAGAATAGCTCTTGAAGCTGCGAAAGGTTTGGAGTATCTCCATGAACAAGTTAGTCCTCCAGTGATACATAGAGATTTTAAGAGCAGCAACATTCTCTTGGACAAAACATTCCATGCCAAAGTTTCTGATTTCGGATTGGCCAAACTTGGATCTGACAAAGCTGGAGGTTACGTTTCCACCAGAGTGTTGGGCACACAGGGATATGTTGCCCCTGAGTATGCATTAACAGGGCATCTGACAACTAAATCAGATGTGTACAGTTATGGGGTTGTGCTGTTGGAATTGCTAACAGGCAGAGTTCCAGTTGATATGAAGAGACCCCCTGGAGAAGGTGTTCTCGTTTCTTGGGCTTTGCCACATCTGACAGATAGGGAGCAGGTTGTACAGATCATGGATCCTGCATTGGAGGGTCAATACTCGATGAAGGAGGTCATTCAGGTGGCAGCAATTGCTGCTATGTGTGTGCAACCAGAGGCAGATTATAGGCCACTGATGGCAGATGTTGTACAGTCACTGGTTCCACTCGTGAAGATTCACAGATCAACCTCGAAGAAATATTGCAAGAGTGGAGAAAACATCGATTTTGGGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009987 GO:0010065 GO:0010068 GO:0010154 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0036211 GO:0038023 GO:0042335 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0048316 GO:0048507 GO:0048508 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0061458 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

394

Amino Acids

43.23

Weight (kDa)

8.63

Isoelectric Point (pI)

29.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	93 - 301	2.4e-42	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	95 - 369	8.1e-45	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012244)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58690
fragaria_vesca	FvH4_6g27620
malus_domestica	MD17G1265400.v1.1
prunus_persica	Prupe.3G115500_v2.0.a1 Prupe.3G115500_v2.0.a1
pyrus_communis	pycom17g26510
rosa_chinensis	RchiOBHm_Chr2g0130301
rosa_laevigata	RLG00000019133
rosa_multiflora	Rmu_sc0001167.1_g000081 Rmu_sc0001336.1_g000074 Rmu_sc0029344.1_g000001
rosa_roxburghii	Rroxscaffold_2G00114050
rosa_rugosa	Rorug01G0180700 Rorug01G0180800 Rorug02G0291400
rosa_samantha	Rh2CG330200 Rh2DG369400
rosa_wichuraiana	Rw2G027620 Rw5G020570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	958
AccII	CGCG	1 cut(s)	36
AciI	CCGC	3 cut(s)	34, 118, 303
AclWI	GGATC	3 cut(s)	748, 980, 993
AcoI	YGGCCR	1 cut(s)	729
AfaI	GTAC	5 cut(s)	20, 320, 848, 975, 1098
AfiI	CCNNNNNNNGG	3 cut(s)	124, 542, 920
AgsI	TTSAA	2 cut(s)	401, 605
AjnI	CCWGG	1 cut(s)	913
AleI	CACNNNNGTG	1 cut(s)	773
AloI	GAACNNNNNNTCC	2 cut(s)	909, 941
AluBI	AGCT	6 cut(s)	102, 215, 484, 599, 608, 752
AluI	AGCT	6 cut(s)	102, 215, 484, 599, 608, 752
Alw26I	GTCTC	1 cut(s)	901
AlwI	GGATC	3 cut(s)	748, 980, 993
AlwNI	CAGNNNCTG	1 cut(s)	1105
AoxI	GGCC	3 cut(s)	30, 729, 1076
ApeKI	GCWGC	6 cut(s)	215, 331, 608, 675, 1034, 1043
Asp700I	GAANNNNTTC	1 cut(s)	924
AspS9I	GGNCC	4 cut(s)	31, 58, 367, 548
AsuC2I	CCSGG	1 cut(s)	586
AvaII	GGWCC	3 cut(s)	58, 367, 548
BaeGI	GKGCMC	1 cut(s)	785
BaeI	ACNNNNGTAYC	2 cut(s)	515, 548
BalI	TGGCCA	1 cut(s)	731
BamHI	GGATCC	1 cut(s)	985
BauI	CACGAG	1 cut(s)	1115
BbsI	GAAGAC	1 cut(s)	229
BbvI	GCAGC	6 cut(s)	202, 318, 595, 687, 1030, 1046
BccI	CCATC	1 cut(s)	1078
BceAI	ACGGC	1 cut(s)	59
BciT130I	CCWGG	1 cut(s)	915
BciVI	GTATCC	1 cut(s)	543
BcnI	CCSGG	1 cut(s)	586
BcoDI	GTCTC	1 cut(s)	901
BfuAI	ACCTGC	1 cut(s)	958
BfuI	GTATCC	1 cut(s)	543
BglI	GCCNNNNNGGC	1 cut(s)	38
BisI	GCNGC	6 cut(s)	216, 332, 609, 676, 1035, 1044
BlsI	GCNGC	6 cut(s)	217, 333, 610, 677, 1036, 1045
Bme1390I	CCNGG	2 cut(s)	586, 915
Bme18I	GGWCC	3 cut(s)	58, 367, 548
BmgT120I	GGNCC	4 cut(s)	31, 58, 367, 548
BmiI	GGNNCC	2 cut(s)	987, 1110
BmrFI	CCNGG	2 cut(s)	586, 915
BmrI	ACTGGG	2 cut(s)	276, 586
BmsI	GCATC	1 cut(s)	832
BmuI	ACTGGG	2 cut(s)	276, 586
BpiI	GAAGAC	1 cut(s)	229
BplI	GAGNNNNNCTC	2 cut(s)	583, 615
BpmI	CTGGAG	3 cut(s)	633, 774, 936
BpuMI	CCSGG	1 cut(s)	586
Bsa29I	ATCGAT	1 cut(s)	1170
BsaI	GGTCTC	1 cut(s)	901
BsaJI	CCNNGG	2 cut(s)	322, 913
BsaXI	ACNNNNNCTCC	8 cut(s)	219, 249, 398, 428, 747, 777, 909, 939
Bsc4I	CCNNNNNNNGG	3 cut(s)	124, 542, 920
Bse1I	ACTGG	5 cut(s)	271, 581, 650, 893, 1110
BseBI	CCWGG	1 cut(s)	915
BseCI	ATCGAT	1 cut(s)	1170
BseDI	CCNNGG	2 cut(s)	322, 913
BseGI	GGATG	2 cut(s)	19, 114
BseLI	CCNNNNNNNGG	3 cut(s)	124, 542, 920
BseMII	CTCAG	2 cut(s)	480, 795
BseNI	ACTGG	5 cut(s)	271, 581, 650, 893, 1110
BseSI	GKGCMC	1 cut(s)	785
BseXI	GCAGC	6 cut(s)	202, 318, 595, 687, 1030, 1046
Bsh1236I	CGCG	1 cut(s)	36
BshFI	GGCC	3 cut(s)	32, 731, 1078
BshVI	ATCGAT	1 cut(s)	1170
BsiSI	CCGG	1 cut(s)	586
BslI	CCNNNNNNNGG	3 cut(s)	124, 542, 920
BsmAI	GTCTC	1 cut(s)	901
BsnI	GGCC	3 cut(s)	32, 731, 1078
Bso31I	GGTCTC	1 cut(s)	901
Bsp1286I	GDGCHC	1 cut(s)	785
Bsp1407I	TGTACA	3 cut(s)	846, 973, 1096
Bsp143I	GATC	4 cut(s)	740, 978, 985, 1130
BspACI	CCGC	3 cut(s)	34, 118, 303
BspANI	GGCC	3 cut(s)	32, 731, 1078
BspCNI	CTCAG	2 cut(s)	479, 796
BspDI	ATCGAT	1 cut(s)	1170
BspFNI	CGCG	1 cut(s)	36
BspLI	GGNNCC	2 cut(s)	987, 1110
BspMI	ACCTGC	1 cut(s)	958
BspPI	GGATC	3 cut(s)	748, 980, 993
BspTNI	GGTCTC	1 cut(s)	901
BsrGI	TGTACA	3 cut(s)	846, 973, 1096
BsrI	ACTGG	5 cut(s)	271, 581, 650, 893, 1110
BssECI	CCNNGG	2 cut(s)	322, 913
BssMI	GATC	4 cut(s)	740, 978, 985, 1130
BssSI	CACGAG	1 cut(s)	1115
Bst2BI	CACGAG	1 cut(s)	1115
Bst2UI	CCWGG	1 cut(s)	915
Bst4CI	ACNGT	4 cut(s)	323, 476, 851, 1101
Bst6I	CTCTTC	2 cut(s)	387, 899
BstAPI	GCANNNNNTGC	2 cut(s)	1040, 1043
BstAUI	TGTACA	3 cut(s)	846, 973, 1096
BstC8I	GCNNGC	1 cut(s)	34
BstDEI	CTNAG	4 cut(s)	419, 466, 571, 804
BstDSI	CCRYGG	1 cut(s)	322
BstENI	CCTNNNNNAGG	1 cut(s)	918
BstF5I	GGATG	2 cut(s)	19, 114
BstFNI	CGCG	1 cut(s)	36
BstKTI	GATC	4 cut(s)	743, 981, 988, 1133
BstMAI	GTCTC	1 cut(s)	901
BstMBI	GATC	4 cut(s)	740, 978, 985, 1130
BstMWI	GCNNNNNNNGC	8 cut(s)	38, 71, 108, 117, 451, 605, 1040, 1043
BstNI	CCWGG	1 cut(s)	915
BstSCI	CCNGG	2 cut(s)	584, 913
BstSLI	GKGCMC	1 cut(s)	785
BstUI	CGCG	1 cut(s)	36
BstV1I	GCAGC	6 cut(s)	202, 318, 595, 687, 1030, 1046
BstV2I	GAAGAC	1 cut(s)	229
BstX2I	RGATCY	2 cut(s)	740, 985
BstXI	CCANNNNNNTGG	1 cut(s)	778
BstYI	RGATCY	2 cut(s)	740, 985
Bsu15I	ATCGAT	1 cut(s)	1170
BsuI	GTATCC	1 cut(s)	543
BsuRI	GGCC	3 cut(s)	32, 731, 1078
BsuTUI	ATCGAT	1 cut(s)	1170
BtgI	CCRYGG	1 cut(s)	322
BtsCI	GGATG	2 cut(s)	19, 114
BtsIMutI	CAGTG	4 cut(s)	547, 657, 1079, 1103
BveI	ACCTGC	1 cut(s)	958
Cac8I	GCNNGC	1 cut(s)	34
CaiI	CAGNNNCTG	1 cut(s)	1105
Cfr13I	GGNCC	4 cut(s)	31, 58, 367, 548
ClaI	ATCGAT	1 cut(s)	1170
Csp6I	GTAC	5 cut(s)	19, 319, 847, 974, 1097
CviAII	CATG	3 cut(s)	632, 704, 982
CviQI	GTAC	5 cut(s)	19, 319, 847, 974, 1097
DdeI	CTNAG	4 cut(s)	419, 466, 571, 804
DpnI	GATC	4 cut(s)	742, 980, 987, 1132
DpnII	GATC	4 cut(s)	740, 978, 985, 1130
EaeI	YGGCCR	1 cut(s)	729
Eam1104I	CTCTTC	2 cut(s)	387, 899
EarI	CTCTTC	2 cut(s)	387, 899
EciI	GGCGGA	1 cut(s)	318
Eco31I	GGTCTC	1 cut(s)	901
Eco47I	GGWCC	3 cut(s)	58, 367, 548
EcoNI	CCTNNNNNAGG	1 cut(s)	918
EcoRII	CCWGG	1 cut(s)	913
EcoT22I	ATGCAT	1 cut(s)	814
FaeI	CATG	3 cut(s)	635, 707, 985
FatI	CATG	3 cut(s)	631, 703, 981
FauI	CCCGC	1 cut(s)	41
Fnu4HI	GCNGC	6 cut(s)	216, 332, 609, 676, 1035, 1044
FokI	GGATG	2 cut(s)	26, 101
Fsp4HI	GCNGC	6 cut(s)	216, 332, 609, 676, 1035, 1044
GluI	GCNGC	6 cut(s)	216, 332, 609, 676, 1035, 1044
GsuI	CTGGAG	3 cut(s)	633, 774, 936
HaeIII	GGCC	3 cut(s)	32, 731, 1078
HapII	CCGG	1 cut(s)	586
Hin1II	CATG	3 cut(s)	635, 707, 985
HinfI	GANTC	2 cut(s)	306, 1123
HpaII	CCGG	1 cut(s)	586
Hpy166II	GTNNAC	2 cut(s)	319, 847
Hpy188I	TCNGA	8 cut(s)	207, 469, 718, 725, 745, 828, 841, 954
Hpy188III	TCNNGA	2 cut(s)	602, 1117
Hpy8I	GTNNAC	2 cut(s)	319, 847
Hpy99I	CGWCG	2 cut(s)	80, 95
HpyAV	CCTTC	4 cut(s)	18, 22, 914, 1009
HpyCH4III	ACNGT	4 cut(s)	323, 476, 851, 1101
HpyCH4IV	ACGT	2 cut(s)	242, 762
HpyCH4V	TGCA	7 cut(s)	334, 353, 520, 812, 992, 1057, 1152
HpyF10VI	GCNNNNNNNGC	8 cut(s)	38, 71, 108, 117, 451, 605, 1040, 1043
HpyF3I	CTNAG	4 cut(s)	419, 466, 571, 804
HpySE526I	ACGT	2 cut(s)	242, 762
Hsp92II	CATG	3 cut(s)	635, 707, 985
Kzo9I	GATC	4 cut(s)	740, 978, 985, 1130
LmnI	GCTCC	1 cut(s)	964
Lsp1109I	GCAGC	6 cut(s)	202, 318, 595, 687, 1030, 1046
LweI	GCATC	1 cut(s)	832
MaeII	ACGT	2 cut(s)	242, 762
MaeIII	GTNAC	3 cut(s)	221, 758, 1101
MalI	GATC	4 cut(s)	742, 980, 987, 1132
MboI	GATC	4 cut(s)	740, 978, 985, 1130
MboII	GAAGA	6 cut(s)	229, 401, 404, 916, 1132, 1153
MfeI	CAATTG	1 cut(s)	1038
MflI	RGATCY	2 cut(s)	740, 985
MhlI	GDGCHC	1 cut(s)	785
MlsI	TGGCCA	1 cut(s)	731
MluCI	AATT	3 cut(s)	354, 872, 1038
MluNI	TGGCCA	1 cut(s)	731
MmeI	TCCRAC	1 cut(s)	849
Mox20I	TGGCCA	1 cut(s)	731
Mph1103I	ATGCAT	1 cut(s)	814
MroXI	GAANNNNTTC	1 cut(s)	924
MscI	TGGCCA	1 cut(s)	731
MseI	TTAA	4 cut(s)	246, 357, 669, 815
MslI	CAYNNNNRTG	2 cut(s)	773, 1028
Msp20I	TGGCCA	1 cut(s)	731
MspA1I	CMGCKG	1 cut(s)	215
MspI	CCGG	1 cut(s)	586
MspR9I	CCNGG	2 cut(s)	586, 915
MunI	CAATTG	1 cut(s)	1038
MvaI	CCWGG	1 cut(s)	915
MvnI	CGCG	1 cut(s)	36
MwoI	GCNNNNNNNGC	8 cut(s)	38, 71, 108, 117, 451, 605, 1040, 1043
NciI	CCSGG	1 cut(s)	586
NdeII	GATC	4 cut(s)	740, 978, 985, 1130
NlaIII	CATG	3 cut(s)	635, 707, 985
NlaIV	GGNNCC	2 cut(s)	987, 1110
NmuCI	GTSAC	2 cut(s)	221, 1101
NsiI	ATGCAT	1 cut(s)	814
OliI	CACNNNNGTG	1 cut(s)	773
PdmI	GAANNNNTTC	1 cut(s)	924
PfeI	GAWTC	2 cut(s)	306, 1123
PkrI	GCNGC	6 cut(s)	217, 333, 610, 677, 1036, 1045
Psp6I	CCWGG	1 cut(s)	913
PspGI	CCWGG	1 cut(s)	913
PspN4I	GGNNCC	2 cut(s)	987, 1110
PspPI	GGNCC	4 cut(s)	31, 58, 367, 548
PstNI	CAGNNNCTG	1 cut(s)	1105
PsuI	RGATCY	2 cut(s)	740, 985
PvuII	CAGCTG	1 cut(s)	215
RsaI	GTAC	5 cut(s)	20, 320, 848, 975, 1098
RsaNI	GTAC	5 cut(s)	19, 319, 847, 974, 1097
RseI	CAYNNNNRTG	2 cut(s)	773, 1028
SaqAI	TTAA	4 cut(s)	246, 357, 669, 815
SatI	GCNGC	6 cut(s)	216, 332, 609, 676, 1035, 1044
Sau3AI	GATC	4 cut(s)	740, 978, 985, 1130
Sau96I	GGNCC	4 cut(s)	31, 58, 367, 548
ScrFI	CCNGG	2 cut(s)	586, 915
SduI	GDGCHC	1 cut(s)	785
SfaNI	GCATC	1 cut(s)	832
SinI	GGWCC	3 cut(s)	58, 367, 548
SmiMI	CAYNNNNRTG	2 cut(s)	773, 1028
Sse9I	AATT	3 cut(s)	354, 872, 1038
SsiI	CCGC	3 cut(s)	34, 118, 303
SspI	AATATT	1 cut(s)	1148
StyD4I	CCNGG	2 cut(s)	584, 913
TaaI	ACNGT	4 cut(s)	323, 476, 851, 1101
TaiI	ACGT	2 cut(s)	245, 765
TaqI	TCGA	4 cut(s)	284, 1010, 1139, 1170
TasI	AATT	3 cut(s)	354, 872, 1038
TatI	WGTACW	4 cut(s)	18, 846, 973, 1096
TfiI	GAWTC	2 cut(s)	306, 1123
Tru1I	TTAA	4 cut(s)	246, 357, 669, 815
Tru9I	TTAA	4 cut(s)	246, 357, 669, 815
TscAI	CASTG	4 cut(s)	547, 657, 1086, 1110
TseFI	GTSAC	2 cut(s)	221, 1101
TseI	GCWGC	6 cut(s)	215, 331, 608, 675, 1034, 1043
Tsp45I	GTSAC	2 cut(s)	221, 1101
TspDTI	ATGAA	4 cut(s)	72, 648, 917, 1028
TspGWI	ACGGA	1 cut(s)	240
TspRI	CASTG	4 cut(s)	547, 657, 1086, 1110
VpaK11BI	GGWCC	3 cut(s)	58, 367, 548
XagI	CCTNNNNNAGG	1 cut(s)	918
XcmI	CCANNNNNNNNNTGG	1 cut(s)	775
XmnI	GAANNNNTTC	1 cut(s)	924
Zsp2I	ATGCAT	1 cut(s)	814

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.