Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0012244

Physical Location & Seq

Genomic Coordinates Reverse (-)

43562948 .. 43565994

Gene Structure 3047 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G027620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

ATGGAAGCAGAGGATGAGTACAGAAGGAAGGCCCGCGTGGCATTGGTGGTCATTGTGGTCCTCGCTTCCCTCGCCGTCGCTTCATTACTCGTCGCCTTTAGCTACTACTGCTACATCCGCAACAAGGTAGCCAAGCACCTCAACAACAACAAGAACAACAACAACAAGGGGGCTGACTTGGAGGGCAAAGGTGGTTTTCCAAATCCGAAAACAGCTGCGAGTGACGGAGTTCAGGTCTTCACGTTTAAGCAACTACATTCGGCGACTGGGGGTTTCAGCAAATCGAATGTGGTTGGGAAAGGCGGATTCGGGTTGGTGTACCGTGGGGTGCTGCATAATGGGAGGAAAGTTGCAATTAAGTTTATGGACCAAGCAGGAAAGCAGGGAGACGAAGAGTTTGAAATGGAGGTGGAGTTGCTAAGTCGGTTGCGTTCTCCATATTTGCTTTCGTTGCTTGGGTATTGTTCAGATAACAGTCGTAAGCTGTTGGTGTATGAGTTTATGGCAAATGGTGGATTGCAGGAACATTTGTATCCTGTCAGTGGTCCTAATGCCCTCTCCACAAACTTAGACTGGGAAACCCGGTTGAGAATAGCTCTTGAAGCTGCGAAAGGTTTGGAGTATCTCCATGAACAAGTTAGTCCTCCAGTGATACATAGAGATTTTAAGAGCAGCAACATTCTCTTGGACAAAACATTCCATGCCAAAGTTTCTGATTTCGGATTGGCCAAACTTGGATCTGACAAAGCTGGAGGTTACGTTTCCACCAGAGTGTTGGGCACACAGGGATATGTTGCCCCTGAGTATGCATTAACAGGGCATCTGACAACTAAATCAGATGTGTACAGTTATGGGGTTGTGCTGTTGGAATTGCTAACAGGCAGAGTTCCAGTTGATATGAAGAGACCCCCTGGAGAAGGTGTTCTCGTTTCTTGGGCTTTGCCGCATCTGACAGATAGGGAGCAGGTTGTACAGATCATGGATCCTGCATTGGAGGGTCAATACTCGATGAAGGAGGTCATTCAGGTGGCAGCAATTGCTGCTATGTGTGTGCAACCAGAGGCAGATTATAGGCCACTGATGGCAGATGTTGTACAGTCACTGGTTCCACTCGTGAAGATTCACAGATCAACCTCGAAGGTAGGCAGATGTTCTAGTTTGCATGCAACAAAGTCACCTGCACAGAATTCGGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009987 GO:0010065 GO:0010068 GO:0010154 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0036211 GO:0038023 GO:0042335 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0048316 GO:0048507 GO:0048508 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0061458 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

398

Amino Acids

43.49

Weight (kDa)

8.91

Isoelectric Point (pI)

29.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	93 - 299	2.3e-42	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	95 - 368	1.1e-44	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012244)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58690
fragaria_vesca	FvH4_6g27620
malus_domestica	MD17G1265400.v1.1
prunus_persica	Prupe.3G115500_v2.0.a1 Prupe.3G115500_v2.0.a1
pyrus_communis	pycom17g26510
rosa_chinensis	RchiOBHm_Chr2g0130301
rosa_laevigata	RLG00000019133
rosa_multiflora	Rmu_sc0001167.1_g000081 Rmu_sc0001336.1_g000074 Rmu_sc0029344.1_g000001
rosa_roxburghii	Rroxscaffold_2G00114050
rosa_rugosa	Rorug01G0180700 Rorug01G0180800 Rorug02G0291400
rosa_samantha	Rh2CG330200 Rh2DG369400
rosa_wichuraiana	Rw2G027620 Rw5G020570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1186
Acc36I	ACCTGC	2 cut(s)	955, 1186
AccII	CGCG	1 cut(s)	36
AciI	CCGC	4 cut(s)	34, 118, 303, 944
AclWI	GGATC	3 cut(s)	745, 977, 990
AcoI	YGGCCR	1 cut(s)	726
AcsI	RAATTY	1 cut(s)	1186
AfaI	GTAC	5 cut(s)	20, 320, 845, 972, 1095
AfiI	CCNNNNNNNGG	3 cut(s)	124, 542, 917
AgsI	TTSAA	2 cut(s)	401, 602
AjnI	CCWGG	1 cut(s)	910
AleI	CACNNNNGTG	1 cut(s)	770
AloI	GAACNNNNNNTCC	2 cut(s)	906, 938
AluBI	AGCT	6 cut(s)	102, 215, 484, 596, 605, 749
AluI	AGCT	6 cut(s)	102, 215, 484, 596, 605, 749
Alw26I	GTCTC	2 cut(s)	381, 898
AlwI	GGATC	3 cut(s)	745, 977, 990
AlwNI	CAGNNNCTG	1 cut(s)	1102
AoxI	GGCC	3 cut(s)	30, 726, 1073
ApeKI	GCWGC	6 cut(s)	215, 331, 605, 672, 1031, 1040
ApoI	RAATTY	1 cut(s)	1186
ArsI	GACNNNNNNTTYG	2 cut(s)	380, 412
Asp700I	GAANNNNTTC	1 cut(s)	921
AspS9I	GGNCC	4 cut(s)	31, 58, 367, 545
AsuC2I	CCSGG	1 cut(s)	583
AsuHPI	GGTGA	1 cut(s)	1167
AvaII	GGWCC	3 cut(s)	58, 367, 545
BaeGI	GKGCMC	1 cut(s)	782
BaeI	ACNNNNGTAYC	2 cut(s)	515, 548
BalI	TGGCCA	1 cut(s)	728
BamHI	GGATCC	1 cut(s)	982
BauI	CACGAG	1 cut(s)	1112
BbsI	GAAGAC	1 cut(s)	229
BbvI	GCAGC	6 cut(s)	202, 318, 592, 684, 1027, 1043
BccI	CCATC	1 cut(s)	1075
BceAI	ACGGC	1 cut(s)	59
BcgI	CGANNNNNNTGC	1 cut(s)	1170
BciT130I	CCWGG	1 cut(s)	912
BciVI	GTATCC	1 cut(s)	543
BcnI	CCSGG	1 cut(s)	583
BcoDI	GTCTC	2 cut(s)	381, 898
BfaI	CTAG	1 cut(s)	1155
BfuAI	ACCTGC	2 cut(s)	955, 1186
BfuI	GTATCC	1 cut(s)	543
BglI	GCCNNNNNGGC	1 cut(s)	38
BisI	GCNGC	7 cut(s)	216, 332, 606, 673, 944, 1032, 1041
BlsI	GCNGC	7 cut(s)	217, 333, 607, 674, 945, 1033, 1042
Bme1390I	CCNGG	2 cut(s)	583, 912
Bme18I	GGWCC	3 cut(s)	58, 367, 545
BmgT120I	GGNCC	4 cut(s)	31, 58, 367, 545
BmiI	GGNNCC	2 cut(s)	984, 1107
BmrFI	CCNGG	2 cut(s)	583, 912
BmrI	ACTGGG	2 cut(s)	276, 583
BmsI	GCATC	2 cut(s)	829, 955
BmuI	ACTGGG	2 cut(s)	276, 583
BpiI	GAAGAC	1 cut(s)	229
BplI	GAGNNNNNCTC	2 cut(s)	580, 612
BpmI	CTGGAG	3 cut(s)	630, 771, 933
BpuMI	CCSGG	1 cut(s)	583
BsaI	GGTCTC	1 cut(s)	898
BsaJI	CCNNGG	2 cut(s)	322, 910
BsaXI	ACNNNNNCTCC	8 cut(s)	219, 249, 398, 428, 744, 774, 906, 936
Bsc4I	CCNNNNNNNGG	3 cut(s)	124, 542, 917
Bse1I	ACTGG	5 cut(s)	271, 578, 647, 890, 1107
BseBI	CCWGG	1 cut(s)	912
BseDI	CCNNGG	2 cut(s)	322, 910
BseGI	GGATG	2 cut(s)	19, 114
BseLI	CCNNNNNNNGG	3 cut(s)	124, 542, 917
BseMII	CTCAG	1 cut(s)	792
BseNI	ACTGG	5 cut(s)	271, 578, 647, 890, 1107
BseSI	GKGCMC	1 cut(s)	782
BseXI	GCAGC	6 cut(s)	202, 318, 592, 684, 1027, 1043
BsgI	GTGCAG	1 cut(s)	1164
Bsh1236I	CGCG	1 cut(s)	36
BshFI	GGCC	3 cut(s)	32, 728, 1075
BsiSI	CCGG	1 cut(s)	583
BslI	CCNNNNNNNGG	3 cut(s)	124, 542, 917
BsmAI	GTCTC	2 cut(s)	381, 898
BsmBI	CGTCTC	1 cut(s)	381
BsnI	GGCC	3 cut(s)	32, 728, 1075
Bso31I	GGTCTC	1 cut(s)	898
Bsp1286I	GDGCHC	1 cut(s)	782
Bsp1407I	TGTACA	3 cut(s)	843, 970, 1093
Bsp143I	GATC	4 cut(s)	737, 975, 982, 1127
BspACI	CCGC	4 cut(s)	34, 118, 303, 944
BspANI	GGCC	3 cut(s)	32, 728, 1075
BspCNI	CTCAG	1 cut(s)	793
BspFNI	CGCG	1 cut(s)	36
BspLI	GGNNCC	2 cut(s)	984, 1107
BspMI	ACCTGC	2 cut(s)	955, 1186
BspPI	GGATC	3 cut(s)	745, 977, 990
BspTNI	GGTCTC	1 cut(s)	898
BsrGI	TGTACA	3 cut(s)	843, 970, 1093
BsrI	ACTGG	5 cut(s)	271, 578, 647, 890, 1107
BssECI	CCNNGG	2 cut(s)	322, 910
BssMI	GATC	4 cut(s)	737, 975, 982, 1127
BssSI	CACGAG	1 cut(s)	1112
Bst2BI	CACGAG	1 cut(s)	1112
Bst2UI	CCWGG	1 cut(s)	912
Bst4CI	ACNGT	4 cut(s)	323, 476, 848, 1098
Bst6I	CTCTTC	2 cut(s)	387, 896
BstAPI	GCANNNNNTGC	2 cut(s)	1037, 1040
BstAUI	TGTACA	3 cut(s)	843, 970, 1093
BstC8I	GCNNGC	2 cut(s)	34, 1164
BstDEI	CTNAG	3 cut(s)	419, 568, 801
BstDSI	CCRYGG	1 cut(s)	322
BstENI	CCTNNNNNAGG	1 cut(s)	915
BstF5I	GGATG	2 cut(s)	19, 114
BstFNI	CGCG	1 cut(s)	36
BstKTI	GATC	4 cut(s)	740, 978, 985, 1130
BstMAI	GTCTC	2 cut(s)	381, 898
BstMBI	GATC	4 cut(s)	737, 975, 982, 1127
BstMWI	GCNNNNNNNGC	8 cut(s)	38, 71, 108, 117, 451, 602, 1037, 1040
BstNI	CCWGG	1 cut(s)	912
BstNSI	RCATGY	1 cut(s)	1166
BstSCI	CCNGG	2 cut(s)	581, 910
BstSLI	GKGCMC	1 cut(s)	782
BstUI	CGCG	1 cut(s)	36
BstV1I	GCAGC	6 cut(s)	202, 318, 592, 684, 1027, 1043
BstV2I	GAAGAC	1 cut(s)	229
BstX2I	RGATCY	2 cut(s)	737, 982
BstXI	CCANNNNNNTGG	1 cut(s)	775
BstYI	RGATCY	2 cut(s)	737, 982
BsuI	GTATCC	1 cut(s)	543
BsuRI	GGCC	3 cut(s)	32, 728, 1075
BtgI	CCRYGG	1 cut(s)	322
BtsCI	GGATG	2 cut(s)	19, 114
BtsIMutI	CAGTG	4 cut(s)	547, 654, 1076, 1100
BveI	ACCTGC	2 cut(s)	955, 1186
Cac8I	GCNNGC	2 cut(s)	34, 1164
CaiI	CAGNNNCTG	1 cut(s)	1102
Cfr13I	GGNCC	4 cut(s)	31, 58, 367, 545
Csp6I	GTAC	5 cut(s)	19, 319, 844, 971, 1094
CviAII	CATG	4 cut(s)	629, 701, 979, 1163
CviQI	GTAC	5 cut(s)	19, 319, 844, 971, 1094
DdeI	CTNAG	3 cut(s)	419, 568, 801
DpnI	GATC	4 cut(s)	739, 977, 984, 1129
DpnII	GATC	4 cut(s)	737, 975, 982, 1127
EaeI	YGGCCR	1 cut(s)	726
Eam1104I	CTCTTC	2 cut(s)	387, 896
EarI	CTCTTC	2 cut(s)	387, 896
EciI	GGCGGA	1 cut(s)	318
Eco31I	GGTCTC	1 cut(s)	898
Eco47I	GGWCC	3 cut(s)	58, 367, 545
EcoNI	CCTNNNNNAGG	1 cut(s)	915
EcoRI	GAATTC	1 cut(s)	1186
EcoRII	CCWGG	1 cut(s)	910
EcoT22I	ATGCAT	1 cut(s)	811
Esp3I	CGTCTC	1 cut(s)	381
FaeI	CATG	4 cut(s)	632, 704, 982, 1166
FatI	CATG	4 cut(s)	628, 700, 978, 1162
FauI	CCCGC	1 cut(s)	41
Fnu4HI	GCNGC	7 cut(s)	216, 332, 606, 673, 944, 1032, 1041
FokI	GGATG	2 cut(s)	26, 101
Fsp4HI	GCNGC	7 cut(s)	216, 332, 606, 673, 944, 1032, 1041
FspBI	CTAG	1 cut(s)	1155
GluI	GCNGC	7 cut(s)	216, 332, 606, 673, 944, 1032, 1041
GsuI	CTGGAG	3 cut(s)	630, 771, 933
HaeIII	GGCC	3 cut(s)	32, 728, 1075
HapII	CCGG	1 cut(s)	583
Hin1II	CATG	4 cut(s)	632, 704, 982, 1166
HinfI	GANTC	2 cut(s)	306, 1120
HpaII	CCGG	1 cut(s)	583
HphI	GGTGA	1 cut(s)	1167
Hpy166II	GTNNAC	2 cut(s)	319, 844
Hpy188I	TCNGA	8 cut(s)	207, 469, 715, 722, 742, 825, 838, 951
Hpy188III	TCNNGA	2 cut(s)	599, 1114
Hpy8I	GTNNAC	2 cut(s)	319, 844
Hpy99I	CGWCG	2 cut(s)	80, 95
HpyAV	CCTTC	5 cut(s)	18, 22, 911, 1006, 1132
HpyCH4III	ACNGT	4 cut(s)	323, 476, 848, 1098
HpyCH4IV	ACGT	2 cut(s)	242, 759
HpyCH4V	TGCA	9 cut(s)	334, 353, 520, 809, 989, 1054, 1162, 1166, 1181
HpyF10VI	GCNNNNNNNGC	8 cut(s)	38, 71, 108, 117, 451, 602, 1037, 1040
HpyF3I	CTNAG	3 cut(s)	419, 568, 801
HpySE526I	ACGT	2 cut(s)	242, 759
Hsp92II	CATG	4 cut(s)	632, 704, 982, 1166
Kzo9I	GATC	4 cut(s)	737, 975, 982, 1127
LmnI	GCTCC	1 cut(s)	961
Lsp1109I	GCAGC	6 cut(s)	202, 318, 592, 684, 1027, 1043
LweI	GCATC	2 cut(s)	829, 955
MaeI	CTAG	1 cut(s)	1155
MaeII	ACGT	2 cut(s)	242, 759
MaeIII	GTNAC	4 cut(s)	221, 755, 1098, 1173
MalI	GATC	4 cut(s)	739, 977, 984, 1129
MboI	GATC	4 cut(s)	737, 975, 982, 1127
MboII	GAAGA	4 cut(s)	229, 404, 913, 1129
MfeI	CAATTG	1 cut(s)	1035
MflI	RGATCY	2 cut(s)	737, 982
MhlI	GDGCHC	1 cut(s)	782
MlsI	TGGCCA	1 cut(s)	728
MluCI	AATT	4 cut(s)	354, 869, 1035, 1186
MluNI	TGGCCA	1 cut(s)	728
MmeI	TCCRAC	1 cut(s)	846
Mox20I	TGGCCA	1 cut(s)	728
Mph1103I	ATGCAT	1 cut(s)	811
MroXI	GAANNNNTTC	1 cut(s)	921
MscI	TGGCCA	1 cut(s)	728
MseI	TTAA	5 cut(s)	246, 357, 666, 812, 1195
MslI	CAYNNNNRTG	2 cut(s)	770, 1025
Msp20I	TGGCCA	1 cut(s)	728
MspA1I	CMGCKG	1 cut(s)	215
MspI	CCGG	1 cut(s)	583
MspR9I	CCNGG	2 cut(s)	583, 912
MunI	CAATTG	1 cut(s)	1035
MvaI	CCWGG	1 cut(s)	912
MvnI	CGCG	1 cut(s)	36
MwoI	GCNNNNNNNGC	8 cut(s)	38, 71, 108, 117, 451, 602, 1037, 1040
NciI	CCSGG	1 cut(s)	583
NdeII	GATC	4 cut(s)	737, 975, 982, 1127
NlaIII	CATG	4 cut(s)	632, 704, 982, 1166
NlaIV	GGNNCC	2 cut(s)	984, 1107
NmuCI	GTSAC	3 cut(s)	221, 1098, 1173
NsiI	ATGCAT	1 cut(s)	811
NspI	RCATGY	1 cut(s)	1166
OliI	CACNNNNGTG	1 cut(s)	770
PaeI	GCATGC	1 cut(s)	1166
PaqCI	CACCTGC	1 cut(s)	1186
PdmI	GAANNNNTTC	1 cut(s)	921
PfeI	GAWTC	2 cut(s)	306, 1120
PkrI	GCNGC	7 cut(s)	217, 333, 607, 674, 945, 1033, 1042
Psp6I	CCWGG	1 cut(s)	910
PspGI	CCWGG	1 cut(s)	910
PspN4I	GGNNCC	2 cut(s)	984, 1107
PspPI	GGNCC	4 cut(s)	31, 58, 367, 545
PstNI	CAGNNNCTG	1 cut(s)	1102
PsuI	RGATCY	2 cut(s)	737, 982
PvuII	CAGCTG	1 cut(s)	215
RsaI	GTAC	5 cut(s)	20, 320, 845, 972, 1095
RsaNI	GTAC	5 cut(s)	19, 319, 844, 971, 1094
RseI	CAYNNNNRTG	2 cut(s)	770, 1025
SaqAI	TTAA	5 cut(s)	246, 357, 666, 812, 1195
SatI	GCNGC	7 cut(s)	216, 332, 606, 673, 944, 1032, 1041
Sau3AI	GATC	4 cut(s)	737, 975, 982, 1127
Sau96I	GGNCC	4 cut(s)	31, 58, 367, 545
ScrFI	CCNGG	2 cut(s)	583, 912
SduI	GDGCHC	1 cut(s)	782
SfaNI	GCATC	2 cut(s)	829, 955
SinI	GGWCC	3 cut(s)	58, 367, 545
SmiMI	CAYNNNNRTG	2 cut(s)	770, 1025
SphI	GCATGC	1 cut(s)	1166
Sse9I	AATT	4 cut(s)	354, 869, 1035, 1186
SsiI	CCGC	4 cut(s)	34, 118, 303, 944
SspMI	CTAG	1 cut(s)	1155
StyD4I	CCNGG	2 cut(s)	581, 910
TaaI	ACNGT	4 cut(s)	323, 476, 848, 1098
TaiI	ACGT	2 cut(s)	245, 762
TaqI	TCGA	3 cut(s)	284, 1007, 1136
TasI	AATT	4 cut(s)	354, 869, 1035, 1186
TatI	WGTACW	4 cut(s)	18, 843, 970, 1093
TauI	GCSGC	1 cut(s)	946
TfiI	GAWTC	2 cut(s)	306, 1120
Tru1I	TTAA	5 cut(s)	246, 357, 666, 812, 1195
Tru9I	TTAA	5 cut(s)	246, 357, 666, 812, 1195
TscAI	CASTG	4 cut(s)	547, 654, 1083, 1107
TseFI	GTSAC	3 cut(s)	221, 1098, 1173
TseI	GCWGC	6 cut(s)	215, 331, 605, 672, 1031, 1040
Tsp45I	GTSAC	3 cut(s)	221, 1098, 1173
TspDTI	ATGAA	4 cut(s)	72, 645, 914, 1025
TspGWI	ACGGA	1 cut(s)	240
TspRI	CASTG	4 cut(s)	547, 654, 1083, 1107
VpaK11BI	GGWCC	3 cut(s)	58, 367, 545
XagI	CCTNNNNNAGG	1 cut(s)	915
XapI	RAATTY	1 cut(s)	1186
XceI	RCATGY	1 cut(s)	1166
XcmI	CCANNNNNNNNNTGG	1 cut(s)	772
XmnI	GAANNNNTTC	1 cut(s)	921
XspI	CTAG	1 cut(s)	1155
Zsp2I	ATGCAT	1 cut(s)	811

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.