Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0012244

Physical Location & Seq

Genomic Coordinates Forward (+)

47041001 .. 47044030

Gene Structure 3030 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019133

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGGAAGCAGAGGATGAGTACAGAAGGAAGGCCCGCGTGGCATTGGTGGTCATTGTGGTCCTCGCTTCCCTCGCCGTCGCTTCATTACTCGTCGCCTTCAGCTACTACTGCTACATCCGCAACAAGGTAGCCAAGCACCTCAACAACAACAAGAACAACAACAACAAGGGGGCTGACTTGGAGGGCAAAGGTGGTTTTCCAAATCCGAAAACAGCTGCCAGTGACGGAGTTCAGGTCTTCACGTTTAAGCAGCTACATTCGGCGACTGGTGGTTTCAGCAAATCGAATGTGGTTGGGAAAGGCGGATTCGGGTTGGTGTACCGTGGGGTGCTGCATAATGGGAGGAAAGTTGCAATTAAGTTTATGGACCAAGCAGGAAAGCAGGGAGAAGAAGAGTTTGAAATGGAGGTGGAGTTGCTAAGTCGGTTGCGTTCTCCATATTTGCTTTCGTTGCTTGGGTATTGTTCAGATAACAGTTGTAAGCTGTTGGTGTATGAGTTTATGGCAAATGGTGGATTGCAGGAACATTTGTATCCTGTCAGTGGGGTTTCTGATTTCGGATTGGCCAAACTTGGATCTGACAAAGCTGGAGGTTATGTTTCCACCAGAGTGTTGGGCACACAGGGATATGTAGCCCCTGAGTATGCATTAACAGGGCATCTGACAACTAAATCAGATGTGTACAGTTATGGGGTTGTGCTGTTGGAATTGCTAACAGGCAGAGTTCCAGTTGATATGAAGAGAACTCCTGGAGAAGGTGTTCTCGTTTCTTGGGCTTTGCCGCATCTGACAGATAGGGAGCAGGTTGTACGGATCATGGATCCTGCATTGGAGGGTCAATACTCGATGAAGGAGGTCATTCAGGTGGCAGCAATTGCTGCTATGTGTGTGCAACCAGAGGCAGATTATCGGCCACTGATGGCAGATGTTGTACAGTCACTGGTTCCGCTCGTGAAGATTCACAGATCAACCTCGAAGGTAGGCAGATGTTCTAGTTTGCATGCAACAAAGTCACCTGCACAGAATTCGGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009987 GO:0010065 GO:0010068 GO:0010154 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0036211 GO:0038023 GO:0042335 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0048316 GO:0048507 GO:0048508 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0061458 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

345

Amino Acids

37.31

Weight (kDa)

8.9

Isoelectric Point (pI)

27.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	93 - 177	2.4e-11	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	95 - 177	3.7e-13	Protein tyrosine and serine/threonine kinase
PK_Tyr_Ser-Thr	PF07714	183 - 314	1.2e-11	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	183 - 247	3.1e-11	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012244)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58690
fragaria_vesca	FvH4_6g27620
malus_domestica	MD17G1265400.v1.1
prunus_persica	Prupe.3G115500_v2.0.a1 Prupe.3G115500_v2.0.a1
pyrus_communis	pycom17g26510
rosa_chinensis	RchiOBHm_Chr2g0130301
rosa_laevigata	RLG00000019133
rosa_multiflora	Rmu_sc0001167.1_g000081 Rmu_sc0001336.1_g000074 Rmu_sc0029344.1_g000001
rosa_roxburghii	Rroxscaffold_2G00114050
rosa_rugosa	Rorug01G0180700 Rorug01G0180800 Rorug02G0291400
rosa_samantha	Rh2CG330200 Rh2DG369400
rosa_wichuraiana	Rw2G027620 Rw5G020570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1024
Acc36I	ACCTGC	2 cut(s)	793, 1024
AccBSI	CCGCTC	1 cut(s)	949
AccII	CGCG	1 cut(s)	36
AciI	CCGC	5 cut(s)	34, 118, 303, 782, 947
AclWI	GGATC	4 cut(s)	583, 815, 821, 828
AcoI	YGGCCR	2 cut(s)	564, 911
AcsI	RAATTY	1 cut(s)	1024
AcuI	CTGAAG	1 cut(s)	82
AfaI	GTAC	5 cut(s)	20, 320, 683, 810, 933
AfiI	CCNNNNNNNGG	3 cut(s)	124, 542, 755
AgsI	TTSAA	1 cut(s)	401
AjnI	CCWGG	1 cut(s)	748
AleI	CACNNNNGTG	1 cut(s)	608
AloI	GAACNNNNNNTCC	2 cut(s)	744, 776
AluBI	AGCT	5 cut(s)	102, 215, 253, 484, 587
AluI	AGCT	5 cut(s)	102, 215, 253, 484, 587
AlwI	GGATC	4 cut(s)	583, 815, 821, 828
AlwNI	CAGNNNCTG	1 cut(s)	940
AoxI	GGCC	3 cut(s)	30, 564, 911
ApeKI	GCWGC	5 cut(s)	215, 250, 331, 869, 878
ApoI	RAATTY	1 cut(s)	1024
Asp700I	GAANNNNTTC	1 cut(s)	759
AspS9I	GGNCC	3 cut(s)	31, 58, 367
AsuHPI	GGTGA	1 cut(s)	1005
AvaII	GGWCC	2 cut(s)	58, 367
BaeGI	GKGCMC	1 cut(s)	620
BaeI	ACNNNNGTAYC	2 cut(s)	515, 548
BalI	TGGCCA	1 cut(s)	566
BamHI	GGATCC	1 cut(s)	820
BauI	CACGAG	1 cut(s)	950
BbsI	GAAGAC	1 cut(s)	229
BbvI	GCAGC	5 cut(s)	202, 262, 318, 865, 881
BccI	CCATC	1 cut(s)	913
BceAI	ACGGC	1 cut(s)	59
BcgI	CGANNNNNNTGC	1 cut(s)	1008
BciT130I	CCWGG	1 cut(s)	750
BciVI	GTATCC	1 cut(s)	543
BfaI	CTAG	1 cut(s)	993
BfuAI	ACCTGC	2 cut(s)	793, 1024
BfuI	GTATCC	1 cut(s)	543
BglI	GCCNNNNNGGC	1 cut(s)	38
BisI	GCNGC	6 cut(s)	216, 251, 332, 782, 870, 879
BlsI	GCNGC	6 cut(s)	217, 252, 333, 783, 871, 880
Bme1390I	CCNGG	1 cut(s)	750
Bme18I	GGWCC	2 cut(s)	58, 367
BmgT120I	GGNCC	3 cut(s)	31, 58, 367
BmiI	GGNNCC	2 cut(s)	822, 945
BmrFI	CCNGG	1 cut(s)	750
BmsI	GCATC	2 cut(s)	667, 793
BpiI	GAAGAC	1 cut(s)	229
BpmI	CTGGAG	2 cut(s)	609, 771
BsaJI	CCNNGG	1 cut(s)	322
BsaXI	ACNNNNNCTCC	8 cut(s)	219, 249, 398, 428, 582, 612, 744, 774
Bsc4I	CCNNNNNNNGG	3 cut(s)	124, 542, 755
Bse1I	ACTGG	4 cut(s)	219, 271, 728, 945
BseBI	CCWGG	1 cut(s)	750
BseDI	CCNNGG	1 cut(s)	322
BseGI	GGATG	2 cut(s)	19, 114
BseLI	CCNNNNNNNGG	3 cut(s)	124, 542, 755
BseMII	CTCAG	1 cut(s)	630
BseNI	ACTGG	4 cut(s)	219, 271, 728, 945
BseSI	GKGCMC	1 cut(s)	620
BseXI	GCAGC	5 cut(s)	202, 262, 318, 865, 881
BsgI	GTGCAG	1 cut(s)	1002
Bsh1236I	CGCG	1 cut(s)	36
BshFI	GGCC	3 cut(s)	32, 566, 913
BslI	CCNNNNNNNGG	3 cut(s)	124, 542, 755
BsnI	GGCC	3 cut(s)	32, 566, 913
Bsp1286I	GDGCHC	1 cut(s)	620
Bsp1407I	TGTACA	2 cut(s)	681, 931
Bsp143I	GATC	4 cut(s)	575, 813, 820, 965
BspACI	CCGC	5 cut(s)	34, 118, 303, 782, 947
BspANI	GGCC	3 cut(s)	32, 566, 913
BspCNI	CTCAG	1 cut(s)	631
BspFNI	CGCG	1 cut(s)	36
BspLI	GGNNCC	2 cut(s)	822, 945
BspMI	ACCTGC	2 cut(s)	793, 1024
BspPI	GGATC	4 cut(s)	583, 815, 821, 828
BsrBI	CCGCTC	1 cut(s)	949
BsrGI	TGTACA	2 cut(s)	681, 931
BsrI	ACTGG	4 cut(s)	219, 271, 728, 945
BssECI	CCNNGG	1 cut(s)	322
BssMI	GATC	4 cut(s)	575, 813, 820, 965
BssSI	CACGAG	1 cut(s)	950
Bst2BI	CACGAG	1 cut(s)	950
Bst2UI	CCWGG	1 cut(s)	750
Bst4CI	ACNGT	4 cut(s)	323, 476, 686, 936
Bst6I	CTCTTC	2 cut(s)	387, 734
BstAPI	GCANNNNNTGC	2 cut(s)	875, 878
BstAUI	TGTACA	2 cut(s)	681, 931
BstC8I	GCNNGC	2 cut(s)	34, 1002
BstDEI	CTNAG	2 cut(s)	419, 639
BstDSI	CCRYGG	1 cut(s)	322
BstENI	CCTNNNNNAGG	1 cut(s)	753
BstF5I	GGATG	2 cut(s)	19, 114
BstFNI	CGCG	1 cut(s)	36
BstKTI	GATC	4 cut(s)	578, 816, 823, 968
BstMBI	GATC	4 cut(s)	575, 813, 820, 965
BstMWI	GCNNNNNNNGC	7 cut(s)	38, 71, 108, 117, 451, 875, 878
BstNI	CCWGG	1 cut(s)	750
BstNSI	RCATGY	1 cut(s)	1004
BstSCI	CCNGG	1 cut(s)	748
BstSLI	GKGCMC	1 cut(s)	620
BstUI	CGCG	1 cut(s)	36
BstV1I	GCAGC	5 cut(s)	202, 262, 318, 865, 881
BstV2I	GAAGAC	1 cut(s)	229
BstX2I	RGATCY	2 cut(s)	575, 820
BstXI	CCANNNNNNTGG	1 cut(s)	613
BstYI	RGATCY	2 cut(s)	575, 820
BsuI	GTATCC	1 cut(s)	543
BsuRI	GGCC	3 cut(s)	32, 566, 913
BtgI	CCRYGG	1 cut(s)	322
BtsCI	GGATG	2 cut(s)	19, 114
BtsIMutI	CAGTG	4 cut(s)	226, 547, 914, 938
BveI	ACCTGC	2 cut(s)	793, 1024
Cac8I	GCNNGC	2 cut(s)	34, 1002
CaiI	CAGNNNCTG	1 cut(s)	940
Cfr13I	GGNCC	3 cut(s)	31, 58, 367
Csp6I	GTAC	5 cut(s)	19, 319, 682, 809, 932
CviAII	CATG	2 cut(s)	817, 1001
CviQI	GTAC	5 cut(s)	19, 319, 682, 809, 932
DdeI	CTNAG	2 cut(s)	419, 639
DpnI	GATC	4 cut(s)	577, 815, 822, 967
DpnII	GATC	4 cut(s)	575, 813, 820, 965
EaeI	YGGCCR	2 cut(s)	564, 911
Eam1104I	CTCTTC	2 cut(s)	387, 734
EarI	CTCTTC	2 cut(s)	387, 734
EciI	GGCGGA	1 cut(s)	318
Eco47I	GGWCC	2 cut(s)	58, 367
Eco57I	CTGAAG	1 cut(s)	82
EcoNI	CCTNNNNNAGG	1 cut(s)	753
EcoRI	GAATTC	1 cut(s)	1024
EcoRII	CCWGG	1 cut(s)	748
EcoT22I	ATGCAT	1 cut(s)	649
FaeI	CATG	2 cut(s)	820, 1004
FatI	CATG	2 cut(s)	816, 1000
FauI	CCCGC	1 cut(s)	41
Fnu4HI	GCNGC	6 cut(s)	216, 251, 332, 782, 870, 879
FokI	GGATG	2 cut(s)	26, 101
Fsp4HI	GCNGC	6 cut(s)	216, 251, 332, 782, 870, 879
FspBI	CTAG	1 cut(s)	993
GluI	GCNGC	6 cut(s)	216, 251, 332, 782, 870, 879
GsuI	CTGGAG	2 cut(s)	609, 771
HaeIII	GGCC	3 cut(s)	32, 566, 913
Hin1II	CATG	2 cut(s)	820, 1004
HinfI	GANTC	2 cut(s)	306, 958
HphI	GGTGA	1 cut(s)	1005
Hpy166II	GTNNAC	2 cut(s)	319, 682
Hpy188I	TCNGA	8 cut(s)	207, 469, 553, 560, 580, 663, 676, 789
Hpy188III	TCNNGA	1 cut(s)	952
Hpy8I	GTNNAC	2 cut(s)	319, 682
Hpy99I	CGWCG	2 cut(s)	80, 95
HpyAV	CCTTC	6 cut(s)	18, 22, 106, 749, 844, 970
HpyCH4III	ACNGT	4 cut(s)	323, 476, 686, 936
HpyCH4IV	ACGT	1 cut(s)	242
HpyCH4V	TGCA	9 cut(s)	334, 353, 520, 647, 827, 892, 1000, 1004, 1019
HpyF10VI	GCNNNNNNNGC	7 cut(s)	38, 71, 108, 117, 451, 875, 878
HpyF3I	CTNAG	2 cut(s)	419, 639
HpySE526I	ACGT	1 cut(s)	242
Hsp92II	CATG	2 cut(s)	820, 1004
Kzo9I	GATC	4 cut(s)	575, 813, 820, 965
LmnI	GCTCC	1 cut(s)	799
Lsp1109I	GCAGC	5 cut(s)	202, 262, 318, 865, 881
LweI	GCATC	2 cut(s)	667, 793
MaeI	CTAG	1 cut(s)	993
MaeII	ACGT	1 cut(s)	242
MaeIII	GTNAC	3 cut(s)	221, 936, 1011
MalI	GATC	4 cut(s)	577, 815, 822, 967
MbiI	CCGCTC	1 cut(s)	949
MboI	GATC	4 cut(s)	575, 813, 820, 965
MboII	GAAGA	5 cut(s)	229, 401, 404, 751, 967
MfeI	CAATTG	1 cut(s)	873
MflI	RGATCY	2 cut(s)	575, 820
MhlI	GDGCHC	1 cut(s)	620
MlsI	TGGCCA	1 cut(s)	566
MluCI	AATT	4 cut(s)	354, 707, 873, 1024
MluNI	TGGCCA	1 cut(s)	566
MmeI	TCCRAC	1 cut(s)	684
Mox20I	TGGCCA	1 cut(s)	566
Mph1103I	ATGCAT	1 cut(s)	649
MroXI	GAANNNNTTC	1 cut(s)	759
MscI	TGGCCA	1 cut(s)	566
MseI	TTAA	4 cut(s)	246, 357, 650, 1033
MslI	CAYNNNNRTG	2 cut(s)	608, 863
Msp20I	TGGCCA	1 cut(s)	566
MspA1I	CMGCKG	1 cut(s)	215
MspR9I	CCNGG	1 cut(s)	750
MunI	CAATTG	1 cut(s)	873
MvaI	CCWGG	1 cut(s)	750
MvnI	CGCG	1 cut(s)	36
MwoI	GCNNNNNNNGC	7 cut(s)	38, 71, 108, 117, 451, 875, 878
NdeII	GATC	4 cut(s)	575, 813, 820, 965
NlaIII	CATG	2 cut(s)	820, 1004
NlaIV	GGNNCC	2 cut(s)	822, 945
NmuCI	GTSAC	3 cut(s)	221, 936, 1011
NsiI	ATGCAT	1 cut(s)	649
NspI	RCATGY	1 cut(s)	1004
OliI	CACNNNNGTG	1 cut(s)	608
PaeI	GCATGC	1 cut(s)	1004
PaqCI	CACCTGC	1 cut(s)	1024
PdmI	GAANNNNTTC	1 cut(s)	759
PfeI	GAWTC	2 cut(s)	306, 958
PfoI	TCCNGGA	1 cut(s)	748
PkrI	GCNGC	6 cut(s)	217, 252, 333, 783, 871, 880
Psp6I	CCWGG	1 cut(s)	748
PspGI	CCWGG	1 cut(s)	748
PspN4I	GGNNCC	2 cut(s)	822, 945
PspPI	GGNCC	3 cut(s)	31, 58, 367
PstNI	CAGNNNCTG	1 cut(s)	940
PsuI	RGATCY	2 cut(s)	575, 820
PvuII	CAGCTG	1 cut(s)	215
RsaI	GTAC	5 cut(s)	20, 320, 683, 810, 933
RsaNI	GTAC	5 cut(s)	19, 319, 682, 809, 932
RseI	CAYNNNNRTG	2 cut(s)	608, 863
SaqAI	TTAA	4 cut(s)	246, 357, 650, 1033
SatI	GCNGC	6 cut(s)	216, 251, 332, 782, 870, 879
Sau3AI	GATC	4 cut(s)	575, 813, 820, 965
Sau96I	GGNCC	3 cut(s)	31, 58, 367
ScrFI	CCNGG	1 cut(s)	750
SduI	GDGCHC	1 cut(s)	620
SfaNI	GCATC	2 cut(s)	667, 793
SinI	GGWCC	2 cut(s)	58, 367
SmiMI	CAYNNNNRTG	2 cut(s)	608, 863
SphI	GCATGC	1 cut(s)	1004
Sse9I	AATT	4 cut(s)	354, 707, 873, 1024
SsiI	CCGC	5 cut(s)	34, 118, 303, 782, 947
SspMI	CTAG	1 cut(s)	993
StyD4I	CCNGG	1 cut(s)	748
TaaI	ACNGT	4 cut(s)	323, 476, 686, 936
TaiI	ACGT	1 cut(s)	245
TaqI	TCGA	3 cut(s)	284, 845, 974
TasI	AATT	4 cut(s)	354, 707, 873, 1024
TatI	WGTACW	3 cut(s)	18, 681, 931
TauI	GCSGC	1 cut(s)	784
TfiI	GAWTC	2 cut(s)	306, 958
Tru1I	TTAA	4 cut(s)	246, 357, 650, 1033
Tru9I	TTAA	4 cut(s)	246, 357, 650, 1033
TscAI	CASTG	4 cut(s)	226, 547, 921, 945
TseFI	GTSAC	3 cut(s)	221, 936, 1011
TseI	GCWGC	5 cut(s)	215, 250, 331, 869, 878
Tsp45I	GTSAC	3 cut(s)	221, 936, 1011
TspDTI	ATGAA	3 cut(s)	72, 752, 863
TspGWI	ACGGA	2 cut(s)	240, 826
TspRI	CASTG	4 cut(s)	226, 547, 921, 945
VpaK11BI	GGWCC	2 cut(s)	58, 367
XagI	CCTNNNNNAGG	1 cut(s)	753
XapI	RAATTY	1 cut(s)	1024
XceI	RCATGY	1 cut(s)	1004
XcmI	CCANNNNNNNNNTGG	1 cut(s)	610
XmnI	GAANNNNTTC	1 cut(s)	759
XspI	CTAG	1 cut(s)	993
Zsp2I	ATGCAT	1 cut(s)	649

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.