Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0012244

Physical Location & Seq

Genomic Coordinates Reverse (-)

39904995 .. 39908356

Gene Structure 3362 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00114050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGGACCAAGCAGGAAAGCAGGGAGAAGAAGAGTTTGAAATGGAGGTGGAGTTGCTAAGTCGGTTGCGTTCTCCATATTTGCTTTCGTTGCTTGGGTATTGTTCAGATAACAGTCGTAAGCTGTTGGTGTATGAGTTTATGGCAAATGGTGGATTGCAGGAACATTTGTATCCTGTCAGTGGTGGTCCTAATGCCCTCTCCACAAACTTAGACTGGGAAACCCGGTTGAGAATAGCTCTTGAAGCTGCGAAAGGTTTGGAGTATCTCCATGAACAAGTTAGTCCTCCAGTGATACACAGAGATTTTAAGAGCAGCAACATTCTCTTGGACAAAACATTCCATGCCAAAGTTTCTGATTTCGGATTGGCCAAACTTGGATCTGACAAAGCTGGAGGTTATGTTTCTACCAGAGTGTTGGGCACACAGGGATATGTTGCCCCTGAGTATGCATTAACAGGGCATCTGACAACTAAATCAGATGTGTACAGTTATGGGGTTGTGCTGTTGGAATTGCTAACAGGCAGAGTTCCAGTTGATATGAAGAGACCCCCTGGAGAAGGTGTTCTCGTTTCTTGGGCTTTGCCGCATCTGACAGATAGGGAGCAGGTTGTACAGATCATGGATCCTGCATTGGAGGGTCAATACTCGATGAAGGAGGTCATTCAGGTGGCAGCAATTGCTGCTATGTGTGTGCAACCAGAGGCAGATTATAGGCCACTGATGGCAGATGTTGTACAGTCACTGGTTCCGCTCGTGAAGATTCACAGATCAACCTCGAAGGTAGGCAGATGTTCTAGTTTGCATGCAACAAAGTCACCTGCACAGAATTCGGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009987 GO:0010065 GO:0010068 GO:0010154 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0036211 GO:0038023 GO:0042335 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0048316 GO:0048507 GO:0048508 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0061458 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

278

Amino Acids

30.49

Weight (kDa)

5.92

Isoelectric Point (pI)

36.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	4 - 248	1.7e-37	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	5 - 180	2.8e-34	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012244)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58690
fragaria_vesca	FvH4_6g27620
malus_domestica	MD17G1265400.v1.1
prunus_persica	Prupe.3G115500_v2.0.a1 Prupe.3G115500_v2.0.a1
pyrus_communis	pycom17g26510
rosa_chinensis	RchiOBHm_Chr2g0130301
rosa_laevigata	RLG00000019133
rosa_multiflora	Rmu_sc0001167.1_g000081 Rmu_sc0001336.1_g000074 Rmu_sc0029344.1_g000001
rosa_roxburghii	Rroxscaffold_2G00114050
rosa_rugosa	Rorug01G0180700 Rorug01G0180800 Rorug02G0291400
rosa_samantha	Rh2CG330200 Rh2DG369400
rosa_wichuraiana	Rw2G027620 Rw5G020570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	826
Acc36I	ACCTGC	2 cut(s)	595, 826
AccBSI	CCGCTC	1 cut(s)	751
AciI	CCGC	2 cut(s)	584, 749
AclWI	GGATC	3 cut(s)	385, 617, 630
AcoI	YGGCCR	1 cut(s)	366
AcsI	RAATTY	1 cut(s)	826
AfaI	GTAC	3 cut(s)	485, 612, 735
AfiI	CCNNNNNNNGG	2 cut(s)	179, 557
AgsI	TTSAA	2 cut(s)	38, 242
AjnI	CCWGG	1 cut(s)	550
AloI	GAACNNNNNNTCC	2 cut(s)	546, 578
AluBI	AGCT	4 cut(s)	121, 236, 245, 389
AluI	AGCT	4 cut(s)	121, 236, 245, 389
Alw26I	GTCTC	1 cut(s)	538
AlwI	GGATC	3 cut(s)	385, 617, 630
AlwNI	CAGNNNCTG	1 cut(s)	742
AoxI	GGCC	2 cut(s)	366, 713
ApeKI	GCWGC	4 cut(s)	245, 312, 671, 680
ApoI	RAATTY	1 cut(s)	826
Asp700I	GAANNNNTTC	1 cut(s)	561
AspS9I	GGNCC	2 cut(s)	4, 185
AsuC2I	CCSGG	1 cut(s)	223
AsuHPI	GGTGA	1 cut(s)	807
AvaII	GGWCC	2 cut(s)	4, 185
BaeGI	GKGCMC	1 cut(s)	422
BaeI	ACNNNNGTAYC	2 cut(s)	152, 185
BalI	TGGCCA	1 cut(s)	368
BamHI	GGATCC	1 cut(s)	622
BauI	CACGAG	1 cut(s)	752
BbvI	GCAGC	4 cut(s)	232, 324, 667, 683
BccI	CCATC	1 cut(s)	715
BcgI	CGANNNNNNTGC	1 cut(s)	810
BciT130I	CCWGG	1 cut(s)	552
BciVI	GTATCC	1 cut(s)	180
BcnI	CCSGG	1 cut(s)	223
BcoDI	GTCTC	1 cut(s)	538
BfaI	CTAG	1 cut(s)	795
BfuAI	ACCTGC	2 cut(s)	595, 826
BfuI	GTATCC	1 cut(s)	180
BisI	GCNGC	5 cut(s)	246, 313, 584, 672, 681
BlsI	GCNGC	5 cut(s)	247, 314, 585, 673, 682
Bme1390I	CCNGG	2 cut(s)	223, 552
Bme18I	GGWCC	2 cut(s)	4, 185
BmgT120I	GGNCC	2 cut(s)	4, 185
BmiI	GGNNCC	2 cut(s)	624, 747
BmrFI	CCNGG	2 cut(s)	223, 552
BmrI	ACTGGG	1 cut(s)	223
BmsI	GCATC	2 cut(s)	469, 595
BmuI	ACTGGG	1 cut(s)	223
BplI	GAGNNNNNCTC	2 cut(s)	220, 252
BpmI	CTGGAG	3 cut(s)	270, 411, 573
BpuMI	CCSGG	1 cut(s)	223
BsaI	GGTCTC	1 cut(s)	538
BsaJI	CCNNGG	1 cut(s)	550
BsaXI	ACNNNNNCTCC	6 cut(s)	35, 65, 384, 414, 546, 576
Bsc4I	CCNNNNNNNGG	2 cut(s)	179, 557
Bse1I	ACTGG	4 cut(s)	218, 287, 530, 747
BseBI	CCWGG	1 cut(s)	552
BseDI	CCNNGG	1 cut(s)	550
BseLI	CCNNNNNNNGG	2 cut(s)	179, 557
BseMII	CTCAG	1 cut(s)	432
BseNI	ACTGG	4 cut(s)	218, 287, 530, 747
BseSI	GKGCMC	1 cut(s)	422
BseXI	GCAGC	4 cut(s)	232, 324, 667, 683
BsgI	GTGCAG	1 cut(s)	804
BshFI	GGCC	2 cut(s)	368, 715
BsiSI	CCGG	1 cut(s)	223
BslI	CCNNNNNNNGG	2 cut(s)	179, 557
BsmAI	GTCTC	1 cut(s)	538
BsnI	GGCC	2 cut(s)	368, 715
Bso31I	GGTCTC	1 cut(s)	538
Bsp1286I	GDGCHC	1 cut(s)	422
Bsp1407I	TGTACA	3 cut(s)	483, 610, 733
Bsp143I	GATC	4 cut(s)	377, 615, 622, 767
BspACI	CCGC	2 cut(s)	584, 749
BspANI	GGCC	2 cut(s)	368, 715
BspCNI	CTCAG	1 cut(s)	433
BspLI	GGNNCC	2 cut(s)	624, 747
BspMI	ACCTGC	2 cut(s)	595, 826
BspPI	GGATC	3 cut(s)	385, 617, 630
BspTNI	GGTCTC	1 cut(s)	538
BsrBI	CCGCTC	1 cut(s)	751
BsrGI	TGTACA	3 cut(s)	483, 610, 733
BsrI	ACTGG	4 cut(s)	218, 287, 530, 747
BssECI	CCNNGG	1 cut(s)	550
BssMI	GATC	4 cut(s)	377, 615, 622, 767
BssSI	CACGAG	1 cut(s)	752
Bst2BI	CACGAG	1 cut(s)	752
Bst2UI	CCWGG	1 cut(s)	552
Bst4CI	ACNGT	3 cut(s)	113, 488, 738
Bst6I	CTCTTC	2 cut(s)	24, 536
BstAPI	GCANNNNNTGC	2 cut(s)	677, 680
BstAUI	TGTACA	3 cut(s)	483, 610, 733
BstC8I	GCNNGC	1 cut(s)	804
BstDEI	CTNAG	3 cut(s)	56, 208, 441
BstENI	CCTNNNNNAGG	1 cut(s)	555
BstKTI	GATC	4 cut(s)	380, 618, 625, 770
BstMAI	GTCTC	1 cut(s)	538
BstMBI	GATC	4 cut(s)	377, 615, 622, 767
BstMWI	GCNNNNNNNGC	4 cut(s)	88, 242, 677, 680
BstNI	CCWGG	1 cut(s)	552
BstNSI	RCATGY	1 cut(s)	806
BstSCI	CCNGG	2 cut(s)	221, 550
BstSLI	GKGCMC	1 cut(s)	422
BstV1I	GCAGC	4 cut(s)	232, 324, 667, 683
BstX2I	RGATCY	2 cut(s)	377, 622
BstXI	CCANNNNNNTGG	1 cut(s)	415
BstYI	RGATCY	2 cut(s)	377, 622
BsuI	GTATCC	1 cut(s)	180
BsuRI	GGCC	2 cut(s)	368, 715
BtsIMutI	CAGTG	4 cut(s)	184, 294, 716, 740
BveI	ACCTGC	2 cut(s)	595, 826
Cac8I	GCNNGC	1 cut(s)	804
CaiI	CAGNNNCTG	1 cut(s)	742
Cfr13I	GGNCC	2 cut(s)	4, 185
Csp6I	GTAC	3 cut(s)	484, 611, 734
CviAII	CATG	4 cut(s)	269, 341, 619, 803
CviJI	RGCY	7 cut(s)	121, 236, 245, 368, 389, 578, 715
CviKI_1	RGCY	7 cut(s)	121, 236, 245, 368, 389, 578, 715
CviQI	GTAC	3 cut(s)	484, 611, 734
DdeI	CTNAG	3 cut(s)	56, 208, 441
DpnI	GATC	4 cut(s)	379, 617, 624, 769
DpnII	GATC	4 cut(s)	377, 615, 622, 767
EaeI	YGGCCR	1 cut(s)	366
Eam1104I	CTCTTC	2 cut(s)	24, 536
EarI	CTCTTC	2 cut(s)	24, 536
Eco31I	GGTCTC	1 cut(s)	538
Eco47I	GGWCC	2 cut(s)	4, 185
EcoNI	CCTNNNNNAGG	1 cut(s)	555
EcoRI	GAATTC	1 cut(s)	826
EcoRII	CCWGG	1 cut(s)	550
EcoT22I	ATGCAT	1 cut(s)	451
FaeI	CATG	4 cut(s)	272, 344, 622, 806
FatI	CATG	4 cut(s)	268, 340, 618, 802
Fnu4HI	GCNGC	5 cut(s)	246, 313, 584, 672, 681
Fsp4HI	GCNGC	5 cut(s)	246, 313, 584, 672, 681
FspBI	CTAG	1 cut(s)	795
GluI	GCNGC	5 cut(s)	246, 313, 584, 672, 681
GsuI	CTGGAG	3 cut(s)	270, 411, 573
HaeIII	GGCC	2 cut(s)	368, 715
HapII	CCGG	1 cut(s)	223
Hin1II	CATG	4 cut(s)	272, 344, 622, 806
HinfI	GANTC	1 cut(s)	760
HpaII	CCGG	1 cut(s)	223
HphI	GGTGA	1 cut(s)	807
Hpy166II	GTNNAC	1 cut(s)	484
Hpy188I	TCNGA	7 cut(s)	106, 355, 362, 382, 465, 478, 591
Hpy188III	TCNNGA	2 cut(s)	239, 754
Hpy8I	GTNNAC	1 cut(s)	484
HpyAV	CCTTC	3 cut(s)	551, 646, 772
HpyCH4III	ACNGT	3 cut(s)	113, 488, 738
HpyCH4V	TGCA	7 cut(s)	157, 449, 629, 694, 802, 806, 821
HpyF10VI	GCNNNNNNNGC	4 cut(s)	88, 242, 677, 680
HpyF3I	CTNAG	3 cut(s)	56, 208, 441
Hsp92II	CATG	4 cut(s)	272, 344, 622, 806
Kzo9I	GATC	4 cut(s)	377, 615, 622, 767
LmnI	GCTCC	1 cut(s)	601
Lsp1109I	GCAGC	4 cut(s)	232, 324, 667, 683
LweI	GCATC	2 cut(s)	469, 595
MaeI	CTAG	1 cut(s)	795
MaeIII	GTNAC	2 cut(s)	738, 813
MalI	GATC	4 cut(s)	379, 617, 624, 769
MbiI	CCGCTC	1 cut(s)	751
MboI	GATC	4 cut(s)	377, 615, 622, 767
MboII	GAAGA	4 cut(s)	38, 41, 553, 769
MfeI	CAATTG	1 cut(s)	675
MflI	RGATCY	2 cut(s)	377, 622
MhlI	GDGCHC	1 cut(s)	422
MlsI	TGGCCA	1 cut(s)	368
MluCI	AATT	3 cut(s)	509, 675, 826
MluNI	TGGCCA	1 cut(s)	368
MmeI	TCCRAC	1 cut(s)	486
MnlI	CCTC	8 cut(s)	37, 206, 294, 386, 628, 649, 694, 784
Mox20I	TGGCCA	1 cut(s)	368
Mph1103I	ATGCAT	1 cut(s)	451
MroXI	GAANNNNTTC	1 cut(s)	561
MscI	TGGCCA	1 cut(s)	368
MseI	TTAA	3 cut(s)	306, 452, 835
MslI	CAYNNNNRTG	1 cut(s)	665
Msp20I	TGGCCA	1 cut(s)	368
MspI	CCGG	1 cut(s)	223
MspR9I	CCNGG	2 cut(s)	223, 552
MunI	CAATTG	1 cut(s)	675
MvaI	CCWGG	1 cut(s)	552
MwoI	GCNNNNNNNGC	4 cut(s)	88, 242, 677, 680
NciI	CCSGG	1 cut(s)	223
NdeII	GATC	4 cut(s)	377, 615, 622, 767
NlaIII	CATG	4 cut(s)	272, 344, 622, 806
NlaIV	GGNNCC	2 cut(s)	624, 747
NmuCI	GTSAC	2 cut(s)	738, 813
NsiI	ATGCAT	1 cut(s)	451
NspI	RCATGY	1 cut(s)	806
PaeI	GCATGC	1 cut(s)	806
PaqCI	CACCTGC	1 cut(s)	826
PdmI	GAANNNNTTC	1 cut(s)	561
PfeI	GAWTC	1 cut(s)	760
PkrI	GCNGC	5 cut(s)	247, 314, 585, 673, 682
Psp6I	CCWGG	1 cut(s)	550
PspGI	CCWGG	1 cut(s)	550
PspN4I	GGNNCC	2 cut(s)	624, 747
PspPI	GGNCC	2 cut(s)	4, 185
PstNI	CAGNNNCTG	1 cut(s)	742
PsuI	RGATCY	2 cut(s)	377, 622
RsaI	GTAC	3 cut(s)	485, 612, 735
RsaNI	GTAC	3 cut(s)	484, 611, 734
RseI	CAYNNNNRTG	1 cut(s)	665
SaqAI	TTAA	3 cut(s)	306, 452, 835
SatI	GCNGC	5 cut(s)	246, 313, 584, 672, 681
Sau3AI	GATC	4 cut(s)	377, 615, 622, 767
Sau96I	GGNCC	2 cut(s)	4, 185
ScrFI	CCNGG	2 cut(s)	223, 552
SduI	GDGCHC	1 cut(s)	422
SfaNI	GCATC	2 cut(s)	469, 595
SinI	GGWCC	2 cut(s)	4, 185
SmiMI	CAYNNNNRTG	1 cut(s)	665
SphI	GCATGC	1 cut(s)	806
Sse9I	AATT	3 cut(s)	509, 675, 826
SsiI	CCGC	2 cut(s)	584, 749
SspMI	CTAG	1 cut(s)	795
StyD4I	CCNGG	2 cut(s)	221, 550
TaaI	ACNGT	3 cut(s)	113, 488, 738
TaqI	TCGA	2 cut(s)	647, 776
TasI	AATT	3 cut(s)	509, 675, 826
TatI	WGTACW	3 cut(s)	483, 610, 733
TauI	GCSGC	1 cut(s)	586
TfiI	GAWTC	1 cut(s)	760
Tru1I	TTAA	3 cut(s)	306, 452, 835
Tru9I	TTAA	3 cut(s)	306, 452, 835
TscAI	CASTG	4 cut(s)	184, 294, 723, 747
TseFI	GTSAC	2 cut(s)	738, 813
TseI	GCWGC	4 cut(s)	245, 312, 671, 680
Tsp45I	GTSAC	2 cut(s)	738, 813
TspDTI	ATGAA	3 cut(s)	285, 554, 665
TspRI	CASTG	4 cut(s)	184, 294, 723, 747
VpaK11BI	GGWCC	2 cut(s)	4, 185
XagI	CCTNNNNNAGG	1 cut(s)	555
XapI	RAATTY	1 cut(s)	826
XceI	RCATGY	1 cut(s)	806
XmnI	GAANNNNTTC	1 cut(s)	561
XspI	CTAG	1 cut(s)	795
Zsp2I	ATGCAT	1 cut(s)	451

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.