Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0012244

Physical Location & Seq

Genomic Coordinates Reverse (-)

24788799 .. 24789140

Gene Structure 342 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0180800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGGAGAGTTTCACATACCTTCATGTCCTGACCCTTCTCTTGTTCATCAACTTTTTACAGCCTACCACCGTTGTAAGTTCATTTGGCAATGAAACCGATCGCTTGGCTTTGCTAAAATTCAAAGATTGCATAGCTTCTGATCCACATGGGCTGTTGAACTCATGGAATGACTCCGTTCAATACTGCAAATGGCCTGGAATTACTTGTGGCAAACGACATCAAAGAGTAACAGCCTTGTACCTACCACACGCTGTTTTGCACGGAACCATATATATCACCATACATTGGCAACCTCTCCTTTCTCAGGGACTTCAGCCTTTACAACAACAGCTTCTCTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009987 GO:0010065 GO:0010068 GO:0010154 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0036211 GO:0038023 GO:0042335 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0048316 GO:0048507 GO:0048508 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0061458 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

113

Amino Acids

12.99

Weight (kDa)

7.8

Isoelectric Point (pI)

33.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	31 - 69	3.6e-12	Leucine rich repeat N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012244)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58690
fragaria_vesca	FvH4_6g27620
malus_domestica	MD17G1265400.v1.1
prunus_persica	Prupe.3G115500_v2.0.a1 Prupe.3G115500_v2.0.a1
pyrus_communis	pycom17g26510
rosa_chinensis	RchiOBHm_Chr2g0130301
rosa_laevigata	RLG00000019133
rosa_multiflora	Rmu_sc0001167.1_g000081 Rmu_sc0001336.1_g000074 Rmu_sc0029344.1_g000001
rosa_roxburghii	Rroxscaffold_2G00114050
rosa_rugosa	Rorug01G0180700 Rorug01G0180800 Rorug02G0291400
rosa_samantha	Rh2CG330200 Rh2DG369400
rosa_wichuraiana	Rw2G027620 Rw5G020570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	285
AclWI	GGATC	1 cut(s)	134
AcsI	RAATTY	1 cut(s)	116
AcuI	CTGAAG	1 cut(s)	296
AfaI	GTAC	1 cut(s)	239
AfiI	CCNNNNNNNGG	2 cut(s)	285, 304
AgsI	TTSAA	3 cut(s)	121, 157, 179
AjnI	CCWGG	1 cut(s)	193
AluBI	AGCT	2 cut(s)	134, 331
AluI	AGCT	2 cut(s)	134, 331
AlwI	GGATC	1 cut(s)	134
AoxI	GGCC	1 cut(s)	191
ApoI	RAATTY	1 cut(s)	116
AsuHPI	GGTGA	1 cut(s)	268
BciT130I	CCWGG	1 cut(s)	195
Bme1390I	CCNGG	1 cut(s)	195
BmiI	GGNNCC	1 cut(s)	265
BmrFI	CCNGG	1 cut(s)	195
Bsc4I	CCNNNNNNNGG	2 cut(s)	285, 304
Bse3DI	GCAATG	1 cut(s)	94
BseBI	CCWGG	1 cut(s)	195
BseLI	CCNNNNNNNGG	2 cut(s)	285, 304
BseMI	GCAATG	1 cut(s)	94
BseMII	CTCAG	1 cut(s)	317
Bsh1285I	CGRYCG	1 cut(s)	100
BshFI	GGCC	1 cut(s)	193
BsiEI	CGRYCG	1 cut(s)	100
BslFI	GGGAC	1 cut(s)	321
BslI	CCNNNNNNNGG	2 cut(s)	285, 304
BsmFI	GGGAC	1 cut(s)	321
BsnI	GGCC	1 cut(s)	193
Bsp143I	GATC	2 cut(s)	97, 139
BspANI	GGCC	1 cut(s)	193
BspCNI	CTCAG	1 cut(s)	316
BspLI	GGNNCC	1 cut(s)	265
BspPI	GGATC	1 cut(s)	134
BsrDI	GCAATG	1 cut(s)	94
BssMI	GATC	2 cut(s)	97, 139
Bst2UI	CCWGG	1 cut(s)	195
Bst4CI	ACNGT	1 cut(s)	70
BstDEI	CTNAG	1 cut(s)	303
BstENI	CCTNNNNNAGG	1 cut(s)	302
BstKTI	GATC	2 cut(s)	100, 142
BstMBI	GATC	2 cut(s)	97, 139
BstMCI	CGRYCG	1 cut(s)	100
BstNI	CCWGG	1 cut(s)	195
BstSCI	CCNGG	1 cut(s)	193
BsuRI	GGCC	1 cut(s)	193
Csp6I	GTAC	1 cut(s)	238
CviAII	CATG	3 cut(s)	23, 146, 162
CviJI	RGCY	8 cut(s)	61, 107, 134, 151, 193, 233, 316, 331
CviKI_1	RGCY	8 cut(s)	61, 107, 134, 151, 193, 233, 316, 331
CviQI	GTAC	1 cut(s)	238
DdeI	CTNAG	1 cut(s)	303
DpnI	GATC	2 cut(s)	99, 141
DpnII	GATC	2 cut(s)	97, 139
Eco57I	CTGAAG	1 cut(s)	296
EcoNI	CCTNNNNNAGG	1 cut(s)	302
EcoRII	CCWGG	1 cut(s)	193
FaeI	CATG	3 cut(s)	26, 149, 165
FaiI	YATR	9 cut(s)	16, 24, 131, 147, 163, 269, 271, 273, 281
FaqI	GGGAC	1 cut(s)	321
FatI	CATG	3 cut(s)	22, 145, 161
HaeIII	GGCC	1 cut(s)	193
Hin1II	CATG	3 cut(s)	26, 149, 165
HinfI	GANTC	1 cut(s)	170
HphI	GGTGA	1 cut(s)	268
Hpy188I	TCNGA	1 cut(s)	139
Hpy188III	TCNNGA	1 cut(s)	28
HpyAV	CCTTC	2 cut(s)	29, 44
HpyCH4III	ACNGT	1 cut(s)	70
HpyCH4V	TGCA	3 cut(s)	129, 186, 259
HpyF3I	CTNAG	1 cut(s)	303
Hsp92II	CATG	3 cut(s)	26, 149, 165
Kzo9I	GATC	2 cut(s)	97, 139
LpnPI	CCDG	5 cut(s)	41, 180, 207, 290, 322
MaeIII	GTNAC	1 cut(s)	226
MalI	GATC	2 cut(s)	99, 141
MboI	GATC	2 cut(s)	97, 139
MluCI	AATT	2 cut(s)	116, 198
MlyI	GAGTC	1 cut(s)	164
MnlI	CCTC	1 cut(s)	303
MspR9I	CCNGG	1 cut(s)	195
MvaI	CCWGG	1 cut(s)	195
NdeII	GATC	2 cut(s)	97, 139
NlaIII	CATG	3 cut(s)	26, 149, 165
NlaIV	GGNNCC	1 cut(s)	265
PflMI	CCANNNNNTGG	1 cut(s)	285
Ple19I	CGATCG	1 cut(s)	100
PleI	GAGTC	1 cut(s)	164
PpsI	GAGTC	1 cut(s)	164
Psp6I	CCWGG	1 cut(s)	193
PspGI	CCWGG	1 cut(s)	193
PspN4I	GGNNCC	1 cut(s)	265
PvuI	CGATCG	1 cut(s)	100
RsaI	GTAC	1 cut(s)	239
RsaNI	GTAC	1 cut(s)	238
Sau3AI	GATC	2 cut(s)	97, 139
SchI	GAGTC	1 cut(s)	164
ScrFI	CCNGG	1 cut(s)	195
SetI	ASST	5 cut(s)	21, 136, 243, 295, 333
Sse9I	AATT	2 cut(s)	116, 198
StyD4I	CCNGG	1 cut(s)	193
TaaI	ACNGT	1 cut(s)	70
TasI	AATT	2 cut(s)	116, 198
TspDTI	ATGAA	4 cut(s)	11, 34, 69, 105
TspGWI	ACGGA	2 cut(s)	163, 276
Van91I	CCANNNNNTGG	1 cut(s)	285
XagI	CCTNNNNNAGG	1 cut(s)	302
XapI	RAATTY	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.