Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0008738

Physical Location & Seq

Genomic Coordinates Forward (+)

21438157 .. 21440599

Gene Structure 2443 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g27850.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGCAGGACGACTGAGCAGCGCGGCGTCCAAGATCATGGGCGGAAACGGTGTCGTCCACCGTTCCGTGGCGTCCTCTCTCCGCCTCCGCGCCGGCATGGGCCTCCCCGTCGGCAAACACATCGTCCCCGACAGACCCCTCCCCGTCAACGACGAGCTCACCTGGGACAACGGCACGCCGTTTCCCGAGCCCTGTATCGATCGCATCGCCGACACCGTCGGCAAGTACGAAGCTTTGGCCTGGCTCACCGGAGGTCTCAGCTGCTTCGTTGGGCTGGGCTTGCTCGCCGTCTGGAACGACAAGGCGTCCAAGATTCCGTTTGCGCCCAAAGTGTACCCGTACGACAATTTGCGAGTGGAGCTCGGCGGAGAACCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0016020 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

126

Amino Acids

13.31

Weight (kDa)

7.79

Isoelectric Point (pI)

37.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008738)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47570
fragaria_vesca	FvH4_6g27850 FvH4_6g27850
malus_domestica	MD09G1234000.v1.1 MD17G1263200.v1.1
prunus_persica	Prupe.3G111600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0326801 RchiOBHm_Chr2g0109601 RchiOBHm_Chr2g0112371 RchiOBHm_Chr2g0131201
rosa_laevigata	RLG00000019174 RLG00000030055
rosa_multiflora	Rmu_co8496245.1_g000001 Rmu_sc0000332.1_g000053 Rmu_sc0008093.1_g000004 Rmu_sc0025896.1_g000002
rosa_roxburghii	Rroxscaffold_2G00113140
rosa_rugosa	Rorug02G0161100 Rorug02G0295400
rosa_samantha	Rh2AG348400 Rh2CG215500 Rh2CG334300
rosa_wichuraiana	Rw2G028290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	23, 90
AciI	CCGC	5 cut(s)	23, 42, 82, 88, 366
AcyI	GRCGYC	3 cut(s)	26, 71, 305
AfaI	GTAC	3 cut(s)	227, 335, 341
AfiI	CCNNNNNNNGG	1 cut(s)	67
AhdI	GACNNNNNGTC	1 cut(s)	304
AjnI	CCWGG	2 cut(s)	161, 239
AluBI	AGCT	4 cut(s)	157, 233, 261, 361
AluI	AGCT	4 cut(s)	157, 233, 261, 361
Alw21I	GWGCWC	2 cut(s)	159, 363
Alw26I	GTCTC	1 cut(s)	260
Ama87I	CYCGRG	1 cut(s)	185
AoxI	GGCC	2 cut(s)	100, 237
ApeKI	GCWGC	2 cut(s)	18, 261
ArsI	GACNNNNNNTTYG	2 cut(s)	108, 140
AspLEI	GCGC	3 cut(s)	23, 92, 325
AspS9I	GGNCC	1 cut(s)	100
AsuHPI	GGTGA	2 cut(s)	151, 238
AvaI	CYCGRG	1 cut(s)	185
BanII	GRGCYC	3 cut(s)	159, 192, 363
Bbv12I	GWGCWC	2 cut(s)	159, 363
BbvI	GCAGC	2 cut(s)	30, 248
BceAI	ACGGC	3 cut(s)	163, 187, 272
BcgI	CGANNNNNNTGC	2 cut(s)	103, 137
BciT130I	CCWGG	2 cut(s)	163, 241
BcoDI	GTCTC	1 cut(s)	260
BisI	GCNGC	3 cut(s)	19, 24, 262
BlsI	GCNGC	3 cut(s)	20, 25, 263
Bme1390I	CCNGG	2 cut(s)	163, 241
BmeRI	GACNNNNNGTC	1 cut(s)	304
BmeT110I	CYCGRG	1 cut(s)	185
BmgT120I	GGNCC	1 cut(s)	100
BmrFI	CCNGG	2 cut(s)	163, 241
BmsI	GCATC	1 cut(s)	213
BplI	GAGNNNNNCTC	2 cut(s)	345, 377
Bsa29I	ATCGAT	1 cut(s)	198
BsaHI	GRCGYC	3 cut(s)	26, 71, 305
BsaI	GGTCTC	1 cut(s)	260
BsaJI	CCNNGG	2 cut(s)	66, 162
BsaWI	WCCGGW	1 cut(s)	248
Bsc4I	CCNNNNNNNGG	1 cut(s)	67
Bse118I	RCCGGY	1 cut(s)	92
BseBI	CCWGG	2 cut(s)	163, 241
BseCI	ATCGAT	1 cut(s)	198
BseDI	CCNNGG	2 cut(s)	66, 162
BseLI	CCNNNNNNNGG	1 cut(s)	67
BseMII	CTCAG	2 cut(s)	5, 271
BseXI	GCAGC	2 cut(s)	30, 248
BseYI	CCCAGC	1 cut(s)	274
Bsh1236I	CGCG	2 cut(s)	23, 90
Bsh1285I	CGRYCG	1 cut(s)	202
BshFI	GGCC	2 cut(s)	102, 239
BshVI	ATCGAT	1 cut(s)	198
BsiEI	CGRYCG	1 cut(s)	202
BsiHKAI	GWGCWC	2 cut(s)	159, 363
BsiHKCI	CYCGRG	1 cut(s)	185
BsiSI	CCGG	2 cut(s)	93, 249
BsiWI	CGTACG	1 cut(s)	339
BslFI	GGGAC	2 cut(s)	110, 179
BslI	CCNNNNNNNGG	1 cut(s)	67
BsmAI	GTCTC	1 cut(s)	260
BsmFI	GGGAC	2 cut(s)	110, 179
BsnI	GGCC	2 cut(s)	102, 239
Bso31I	GGTCTC	1 cut(s)	260
BsoBI	CYCGRG	1 cut(s)	185
Bsp1286I	GDGCHC	3 cut(s)	159, 192, 363
Bsp143I	GATC	2 cut(s)	33, 199
BspACI	CCGC	5 cut(s)	23, 42, 82, 88, 366
BspANI	GGCC	2 cut(s)	102, 239
BspCNI	CTCAG	2 cut(s)	6, 270
BspDI	ATCGAT	1 cut(s)	198
BspFNI	CGCG	2 cut(s)	23, 90
BspTNI	GGTCTC	1 cut(s)	260
BsrFI	RCCGGY	1 cut(s)	92
BssAI	RCCGGY	1 cut(s)	92
BssECI	CCNNGG	2 cut(s)	66, 162
BssMI	GATC	2 cut(s)	33, 199
BssNI	GRCGYC	3 cut(s)	26, 71, 305
Bst2UI	CCWGG	2 cut(s)	163, 241
Bst4CI	ACNGT	4 cut(s)	50, 62, 217, 375
BstACI	GRCGYC	3 cut(s)	26, 71, 305
BstC8I	GCNNGC	4 cut(s)	94, 176, 281, 285
BstDEI	CTNAG	2 cut(s)	14, 257
BstDSI	CCRYGG	1 cut(s)	66
BstFNI	CGCG	2 cut(s)	23, 90
BstHHI	GCGC	3 cut(s)	23, 92, 325
BstKTI	GATC	2 cut(s)	36, 202
BstMAI	GTCTC	1 cut(s)	260
BstMBI	GATC	2 cut(s)	33, 199
BstMCI	CGRYCG	1 cut(s)	202
BstMWI	GCNNNNNNNGC	2 cut(s)	280, 358
BstNI	CCWGG	2 cut(s)	163, 241
BstSCI	CCNGG	2 cut(s)	161, 239
BstUI	CGCG	2 cut(s)	23, 90
BstV1I	GCAGC	2 cut(s)	30, 248
BstXI	CCANNNNNNTGG	1 cut(s)	37
Bsu15I	ATCGAT	1 cut(s)	198
BsuRI	GGCC	2 cut(s)	102, 239
BsuTUI	ATCGAT	1 cut(s)	198
BtgI	CCRYGG	1 cut(s)	66
BtgZI	GCGATG	1 cut(s)	190
Cac8I	GCNNGC	4 cut(s)	94, 176, 281, 285
CfoI	GCGC	3 cut(s)	23, 92, 325
Cfr10I	RCCGGY	1 cut(s)	92
Cfr13I	GGNCC	1 cut(s)	100
ClaI	ATCGAT	1 cut(s)	198
CseI	GACGC	3 cut(s)	15, 60, 294
Csp6I	GTAC	3 cut(s)	226, 334, 340
CviAII	CATG	2 cut(s)	37, 97
CviQI	GTAC	3 cut(s)	226, 334, 340
DdeI	CTNAG	2 cut(s)	14, 257
DpnI	GATC	2 cut(s)	35, 201
DpnII	GATC	2 cut(s)	33, 199
DriI	GACNNNNNGTC	1 cut(s)	304
Eam1105I	GACNNNNNGTC	1 cut(s)	304
EciI	GGCGGA	2 cut(s)	57, 71
Ecl136II	GAGCTC	2 cut(s)	157, 361
Eco24I	GRGCYC	3 cut(s)	159, 192, 363
Eco31I	GGTCTC	1 cut(s)	260
Eco53kI	GAGCTC	2 cut(s)	157, 361
Eco88I	CYCGRG	1 cut(s)	185
EcoICRI	GAGCTC	2 cut(s)	157, 361
EcoRII	CCWGG	2 cut(s)	161, 239
EcoT38I	GRGCYC	3 cut(s)	159, 192, 363
FaeI	CATG	2 cut(s)	40, 100
FaiI	YATR	2 cut(s)	38, 98
FaqI	GGGAC	2 cut(s)	110, 179
FatI	CATG	2 cut(s)	36, 96
Fnu4HI	GCNGC	3 cut(s)	19, 24, 262
FriOI	GRGCYC	3 cut(s)	159, 192, 363
Fsp4HI	GCNGC	3 cut(s)	19, 24, 262
GlaI	GCGC	3 cut(s)	22, 91, 324
GluI	GCNGC	3 cut(s)	19, 24, 262
GsaI	CCCAGC	1 cut(s)	278
HaeIII	GGCC	2 cut(s)	102, 239
HapII	CCGG	2 cut(s)	93, 249
HgaI	GACGC	3 cut(s)	15, 60, 294
HhaI	GCGC	3 cut(s)	23, 92, 325
Hin1I	GRCGYC	3 cut(s)	26, 71, 305
Hin1II	CATG	2 cut(s)	40, 100
Hin6I	GCGC	3 cut(s)	21, 90, 323
HinP1I	GCGC	3 cut(s)	21, 90, 323
HincII	GTYRAC	1 cut(s)	148
HindII	GTYRAC	1 cut(s)	148
HindIII	AAGCTT	1 cut(s)	231
HinfI	GANTC	1 cut(s)	313
HpaII	CCGG	2 cut(s)	93, 249
HphI	GGTGA	2 cut(s)	151, 238
Hpy166II	GTNNAC	3 cut(s)	58, 148, 334
Hpy188III	TCNNGA	2 cut(s)	185, 292
Hpy8I	GTNNAC	3 cut(s)	58, 148, 334
Hpy99I	CGWCG	3 cut(s)	113, 155, 221
HpyCH4III	ACNGT	4 cut(s)	50, 62, 217, 375
HpyF10VI	GCNNNNNNNGC	2 cut(s)	280, 358
HpyF3I	CTNAG	2 cut(s)	14, 257
Hsp92I	GRCGYC	3 cut(s)	26, 71, 305
Hsp92II	CATG	2 cut(s)	40, 100
HspAI	GCGC	3 cut(s)	21, 90, 323
KroI	GCCGGC	1 cut(s)	92
KroNI	GCCGGC	1 cut(s)	94
Kzo9I	GATC	2 cut(s)	33, 199
LmnI	GCTCC	1 cut(s)	358
LpnPI	CCDG	9 cut(s)	106, 148, 175, 205, 226, 253, 260, 262, 277
Lsp1109I	GCAGC	2 cut(s)	30, 248
LweI	GCATC	1 cut(s)	213
MalI	GATC	2 cut(s)	35, 201
MboI	GATC	2 cut(s)	33, 199
MhlI	GDGCHC	3 cut(s)	159, 192, 363
MluCI	AATT	1 cut(s)	346
MnlI	CCTC	5 cut(s)	85, 95, 113, 149, 245
MroNI	GCCGGC	1 cut(s)	92
MspA1I	CMGCKG	1 cut(s)	261
MspI	CCGG	2 cut(s)	93, 249
MspR9I	CCNGG	2 cut(s)	163, 241
MvaI	CCWGG	2 cut(s)	163, 241
MvnI	CGCG	2 cut(s)	23, 90
MwoI	GCNNNNNNNGC	2 cut(s)	280, 358
NaeI	GCCGGC	1 cut(s)	94
NdeII	GATC	2 cut(s)	33, 199
NgoMIV	GCCGGC	1 cut(s)	92
NlaIII	CATG	2 cut(s)	40, 100
NmeAIII	GCCGAG	1 cut(s)	342
PcsI	WCGNNNNNNNCGW	2 cut(s)	213, 225
PdiI	GCCGGC	1 cut(s)	94
PfeI	GAWTC	1 cut(s)	313
Pfl23II	CGTACG	1 cut(s)	339
PflFI	GACNNNGTC	1 cut(s)	215
PkrI	GCNGC	3 cut(s)	20, 25, 263
Ple19I	CGATCG	1 cut(s)	202
Psp124BI	GAGCTC	2 cut(s)	159, 363
Psp6I	CCWGG	2 cut(s)	161, 239
PspFI	CCCAGC	1 cut(s)	274
PspGI	CCWGG	2 cut(s)	161, 239
PspLI	CGTACG	1 cut(s)	339
PspPI	GGNCC	1 cut(s)	100
PsyI	GACNNNGTC	1 cut(s)	215
PvuI	CGATCG	1 cut(s)	202
PvuII	CAGCTG	1 cut(s)	261
RsaI	GTAC	3 cut(s)	227, 335, 341
RsaNI	GTAC	3 cut(s)	226, 334, 340
SacI	GAGCTC	2 cut(s)	159, 363
SatI	GCNGC	3 cut(s)	19, 24, 262
Sau3AI	GATC	2 cut(s)	33, 199
Sau96I	GGNCC	1 cut(s)	100
ScrFI	CCNGG	2 cut(s)	163, 241
SduI	GDGCHC	3 cut(s)	159, 192, 363
SetI	ASST	6 cut(s)	159, 164, 235, 256, 263, 363
SfaNI	GCATC	1 cut(s)	213
Sse9I	AATT	1 cut(s)	346
SsiI	CCGC	5 cut(s)	23, 42, 82, 88, 366
SstI	GAGCTC	2 cut(s)	159, 363
StyD4I	CCNGG	2 cut(s)	161, 239
TaaI	ACNGT	4 cut(s)	50, 62, 217, 375
TaqI	TCGA	1 cut(s)	198
TasI	AATT	1 cut(s)	346
TauI	GCSGC	1 cut(s)	26
TfiI	GAWTC	1 cut(s)	313
TseI	GCWGC	2 cut(s)	18, 261
TspGWI	ACGGA	2 cut(s)	55, 306
Tth111I	GACNNNGTC	1 cut(s)	215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.