Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0008738

Physical Location & Seq

Genomic Coordinates Reverse (-)

9295173 .. 9297418

Gene Structure 2246 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G111600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGCAGGGAGATTGAGCAGTGTGGCTTCCAAGATCATGGGCGGAAACGGAGTCGTCTCCCGTTCCGTCGCTTCGTCTCTTCGTCTCCGCGCCGGCATGGGCCTTCCTGTCGGCAAACACATCGTCCCCAACAGACCCCTTCACGTAAACGACGAGCTCGTCTGGGACAACGGCACGCCGTTTCCCGAACCCTGTATTGATCGCATCGCCGACACCGTAGGTAAGTACGAAGCTTTGGCTTGGCTCTGTGGGGGTTTGAGCTTCTTTGCTTCTTTGGGTTTGTTGGCCGTGTGGAACGACAAGGCGTCTAAGATCCCATTTGCTCCAAAAGTGTACCCATACGACAATCTTCGAGTGGAGCTCGGTGGAGAACCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0016020 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

126

Amino Acids

13.38

Weight (kDa)

8.66

Isoelectric Point (pI)

36.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008738)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47570
fragaria_vesca	FvH4_6g27850 FvH4_6g27850
malus_domestica	MD09G1234000.v1.1 MD17G1263200.v1.1
prunus_persica	Prupe.3G111600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0326801 RchiOBHm_Chr2g0109601 RchiOBHm_Chr2g0112371 RchiOBHm_Chr2g0131201
rosa_laevigata	RLG00000019174 RLG00000030055
rosa_multiflora	Rmu_co8496245.1_g000001 Rmu_sc0000332.1_g000053 Rmu_sc0008093.1_g000004 Rmu_sc0025896.1_g000002
rosa_roxburghii	Rroxscaffold_2G00113140
rosa_rugosa	Rorug02G0161100 Rorug02G0295400
rosa_samantha	Rh2AG348400 Rh2CG215500 Rh2CG334300
rosa_wichuraiana	Rw2G028290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	158
AccII	CGCG	1 cut(s)	90
AciI	CCGC	2 cut(s)	42, 88
AclWI	GGATC	1 cut(s)	307
AcoI	YGGCCR	1 cut(s)	285
AcyI	GRCGYC	1 cut(s)	305
AfaI	GTAC	2 cut(s)	227, 335
AhdI	GACNNNNNGTC	1 cut(s)	304
AluBI	AGCT	4 cut(s)	157, 233, 261, 361
AluI	AGCT	4 cut(s)	157, 233, 261, 361
Alw21I	GWGCWC	2 cut(s)	159, 363
Alw26I	GTCTC	3 cut(s)	61, 81, 89
AlwI	GGATC	1 cut(s)	307
AoxI	GGCC	2 cut(s)	100, 285
ArsI	GACNNNNNNTTYG	2 cut(s)	108, 140
AspLEI	GCGC	1 cut(s)	92
AspS9I	GGNCC	1 cut(s)	100
BanII	GRGCYC	2 cut(s)	159, 363
Bbv12I	GWGCWC	2 cut(s)	159, 363
BceAI	ACGGC	3 cut(s)	163, 187, 272
BcgI	CGANNNNNNTGC	2 cut(s)	103, 137
BcoDI	GTCTC	3 cut(s)	61, 81, 89
BmeRI	GACNNNNNGTC	1 cut(s)	304
BmgT120I	GGNCC	1 cut(s)	100
BmsI	GCATC	1 cut(s)	213
BplI	GAGNNNNNCTC	2 cut(s)	345, 377
BsaAI	YACGTR	1 cut(s)	145
BsaHI	GRCGYC	1 cut(s)	305
Bse118I	RCCGGY	1 cut(s)	92
Bsh1236I	CGCG	1 cut(s)	90
BshFI	GGCC	2 cut(s)	102, 287
BsiHKAI	GWGCWC	2 cut(s)	159, 363
BsiSI	CCGG	1 cut(s)	93
BslFI	GGGAC	2 cut(s)	110, 179
BsmAI	GTCTC	3 cut(s)	61, 81, 89
BsmBI	CGTCTC	3 cut(s)	61, 81, 89
BsmFI	GGGAC	2 cut(s)	110, 179
BsnI	GGCC	2 cut(s)	102, 287
Bsp1286I	GDGCHC	2 cut(s)	159, 363
Bsp143I	GATC	3 cut(s)	33, 199, 312
BspACI	CCGC	2 cut(s)	42, 88
BspANI	GGCC	2 cut(s)	102, 287
BspFNI	CGCG	1 cut(s)	90
BspPI	GGATC	1 cut(s)	307
BsrFI	RCCGGY	1 cut(s)	92
BssAI	RCCGGY	1 cut(s)	92
BssMI	GATC	3 cut(s)	33, 199, 312
BssNI	GRCGYC	1 cut(s)	305
Bst4CI	ACNGT	2 cut(s)	217, 375
Bst6I	CTCTTC	1 cut(s)	84
BstACI	GRCGYC	1 cut(s)	305
BstBAI	YACGTR	1 cut(s)	145
BstC8I	GCNNGC	2 cut(s)	94, 176
BstDEI	CTNAG	1 cut(s)	309
BstFNI	CGCG	1 cut(s)	90
BstHHI	GCGC	1 cut(s)	92
BstKTI	GATC	3 cut(s)	36, 202, 315
BstMAI	GTCTC	3 cut(s)	61, 81, 89
BstMBI	GATC	3 cut(s)	33, 199, 312
BstUI	CGCG	1 cut(s)	90
BstX2I	RGATCY	1 cut(s)	312
BstXI	CCANNNNNNTGG	1 cut(s)	37
BstYI	RGATCY	1 cut(s)	312
BsuRI	GGCC	2 cut(s)	102, 287
BtgZI	GCGATG	1 cut(s)	190
BtsI	GCAGTG	1 cut(s)	25
BtsIMutI	CAGTG	1 cut(s)	25
Cac8I	GCNNGC	2 cut(s)	94, 176
CfoI	GCGC	1 cut(s)	92
Cfr10I	RCCGGY	1 cut(s)	92
Cfr13I	GGNCC	1 cut(s)	100
CseI	GACGC	1 cut(s)	294
Csp6I	GTAC	2 cut(s)	226, 334
CviAII	CATG	2 cut(s)	37, 97
CviJI	RGCY	9 cut(s)	26, 102, 157, 233, 239, 244, 261, 287, 361
CviKI_1	RGCY	9 cut(s)	26, 102, 157, 233, 239, 244, 261, 287, 361
CviQI	GTAC	2 cut(s)	226, 334
DdeI	CTNAG	1 cut(s)	309
DpnI	GATC	3 cut(s)	35, 201, 314
DpnII	GATC	3 cut(s)	33, 199, 312
DrdI	GACNNNNNNGTC	1 cut(s)	158
DriI	GACNNNNNGTC	1 cut(s)	304
DseDI	GACNNNNNNGTC	1 cut(s)	158
EaeI	YGGCCR	1 cut(s)	285
Eam1104I	CTCTTC	1 cut(s)	84
Eam1105I	GACNNNNNGTC	1 cut(s)	304
EarI	CTCTTC	1 cut(s)	84
EciI	GGCGGA	1 cut(s)	57
Ecl136II	GAGCTC	2 cut(s)	157, 361
Eco24I	GRGCYC	2 cut(s)	159, 363
Eco53kI	GAGCTC	2 cut(s)	157, 361
EcoICRI	GAGCTC	2 cut(s)	157, 361
EcoT38I	GRGCYC	2 cut(s)	159, 363
Esp3I	CGTCTC	3 cut(s)	61, 81, 89
FaeI	CATG	2 cut(s)	40, 100
FaiI	YATR	3 cut(s)	38, 98, 340
FaqI	GGGAC	2 cut(s)	110, 179
FatI	CATG	2 cut(s)	36, 96
FriOI	GRGCYC	2 cut(s)	159, 363
GlaI	GCGC	1 cut(s)	91
HaeIII	GGCC	2 cut(s)	102, 287
HapII	CCGG	1 cut(s)	93
HgaI	GACGC	1 cut(s)	294
HhaI	GCGC	1 cut(s)	92
Hin1I	GRCGYC	1 cut(s)	305
Hin1II	CATG	2 cut(s)	40, 100
Hin6I	GCGC	1 cut(s)	90
HinP1I	GCGC	1 cut(s)	90
HindIII	AAGCTT	1 cut(s)	231
HinfI	GANTC	1 cut(s)	51
HpaII	CCGG	1 cut(s)	93
Hpy166II	GTNNAC	2 cut(s)	148, 334
Hpy188III	TCNNGA	1 cut(s)	185
Hpy8I	GTNNAC	2 cut(s)	148, 334
Hpy99I	CGWCG	2 cut(s)	71, 155
HpyAV	CCTTC	2 cut(s)	113, 149
HpyCH4III	ACNGT	2 cut(s)	217, 375
HpyCH4IV	ACGT	1 cut(s)	144
HpyF3I	CTNAG	1 cut(s)	309
HpySE526I	ACGT	1 cut(s)	144
Hsp92I	GRCGYC	1 cut(s)	305
Hsp92II	CATG	2 cut(s)	40, 100
HspAI	GCGC	1 cut(s)	90
KroI	GCCGGC	1 cut(s)	92
KroNI	GCCGGC	1 cut(s)	94
Kzo9I	GATC	3 cut(s)	33, 199, 312
LmnI	GCTCC	2 cut(s)	328, 358
LpnPI	CCDG	4 cut(s)	106, 120, 148, 205
LweI	GCATC	1 cut(s)	213
MaeII	ACGT	1 cut(s)	144
MalI	GATC	3 cut(s)	35, 201, 314
MboI	GATC	3 cut(s)	33, 199, 312
MboII	GAAGA	2 cut(s)	71, 341
MflI	RGATCY	1 cut(s)	312
MhlI	GDGCHC	2 cut(s)	159, 363
MlyI	GAGTC	1 cut(s)	60
MroNI	GCCGGC	1 cut(s)	92
MspI	CCGG	1 cut(s)	93
MvnI	CGCG	1 cut(s)	90
NaeI	GCCGGC	1 cut(s)	94
NdeII	GATC	3 cut(s)	33, 199, 312
NgoMIV	GCCGGC	1 cut(s)	92
NlaIII	CATG	2 cut(s)	40, 100
PcsI	WCGNNNNNNNCGW	3 cut(s)	150, 156, 213
PdiI	GCCGGC	1 cut(s)	94
PleI	GAGTC	1 cut(s)	59
PpsI	GAGTC	1 cut(s)	59
Ppu21I	YACGTR	1 cut(s)	145
Psp124BI	GAGCTC	2 cut(s)	159, 363
PspPI	GGNCC	1 cut(s)	100
PsuI	RGATCY	1 cut(s)	312
RsaI	GTAC	2 cut(s)	227, 335
RsaNI	GTAC	2 cut(s)	226, 334
SacI	GAGCTC	2 cut(s)	159, 363
Sau3AI	GATC	3 cut(s)	33, 199, 312
Sau96I	GGNCC	1 cut(s)	100
SchI	GAGTC	1 cut(s)	60
SduI	GDGCHC	2 cut(s)	159, 363
SetI	ASST	6 cut(s)	147, 159, 223, 235, 263, 363
SfaNI	GCATC	1 cut(s)	213
SsiI	CCGC	2 cut(s)	42, 88
SstI	GAGCTC	2 cut(s)	159, 363
TaaI	ACNGT	2 cut(s)	217, 375
TaiI	ACGT	1 cut(s)	147
TaqI	TCGA	1 cut(s)	352
TscAI	CASTG	1 cut(s)	25
TspGWI	ACGGA	2 cut(s)	55, 63
TspRI	CASTG	1 cut(s)	25

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.