Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0008738

Physical Location & Seq

Genomic Coordinates Reverse (-)

14405596 .. 14407934

Gene Structure 2339 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0161100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGGCACCAAGAAGAAAACTACCCTCTTTTTTCAAAATTGTTCCGGCTGATCAGTTCACTAACAAGTTGAAAATCCCAAGAGAATTTCTCCAGCATTTCCATGGAAACATACCTCACCAGTGCCGTCTTCAAACGGCAGCCCGAACTTGGGCTGTCGATTTGGAAGAGGTTAATAACAAGTTCTATTTCCAAAAGGGGTGGAATGAATTTGTGCAAGACAATGGCTTAAAGTATGGTGAACTTCTAGTCTTCCATTATGCTGGAAACTCAGACTTCCATGTGGATATCTTTGGAAAAAATACCTGTGGAAAGCTGTTTGTAATGCCTGAGATAGAAGAAGCTAATGAAGAAGATGATGATGTATCTCTTCAAATCTCAGACGACTCTCCAGTGTCAAGTCCTCCACCTCAAAAGAAATACAAAACAAGTTCGAGTGCTAAAGGACAGATGAAAAACAAAGAGGCACATTGGTCCAAATCAAAAATGAAAAAGAAAGATAGAGTAGGCACCTCTAGCACACAAAGATTCACAAGACAAAAACTTGAGCCACGGTGGAGAGCTCATGTGAGAGCTGAAGCATTCAAATTCAAAAACCCTTCTGCTTTCTTGGTTTCCATGAAGCCCTCCTACATCAAGTATAAATTTGTGTGGTTGCCATCAGAGTTCACCATGCTAGTGAAACCTCTTATTGAGAACTCTGGTTATGTTACCCTTCGGGTTTCAGATGGGAGAGTGAAAACTTGGCAGGCTAAATTGACTTGTAATGACGTTACTACCAACAGAAGCAAATTACATGGTAGTTGGTCTAAATTTATGCGAGACAATAATTTGAAAGAGGGTGATCTGTGTGCATTTATGTTGATTAAAGACACTACAATTTTAATCGAAGTTGTCATTTTCCGGACCAAAGAAGCAGCAACTTGCACCTTCTCCCCAGATATGTCTGATAATGAGGATCATGAGAAGGATGATGAAGATGATGATTATGATGAGGAGGGTGATGACGAAAATGAAGATGAAGAGGAGGAGGAGGAGGAGGAGGAGGATGATGATGATTCTCATGAAACCGTCGACTATGTTTCTAGTGATTCTAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0016020 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

365

Amino Acids

42.33

Weight (kDa)

5.1

Isoelectric Point (pI)

49.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	10 - 99	3.5e-16	B3 DNA binding domain
B3	PF02362	204 - 301	1e-11	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008738)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47570
fragaria_vesca	FvH4_6g27850 FvH4_6g27850
malus_domestica	MD09G1234000.v1.1 MD17G1263200.v1.1
prunus_persica	Prupe.3G111600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0326801 RchiOBHm_Chr2g0109601 RchiOBHm_Chr2g0112371 RchiOBHm_Chr2g0131201
rosa_laevigata	RLG00000019174 RLG00000030055
rosa_multiflora	Rmu_co8496245.1_g000001 Rmu_sc0000332.1_g000053 Rmu_sc0008093.1_g000004 Rmu_sc0025896.1_g000002
rosa_roxburghii	Rroxscaffold_2G00113140
rosa_rugosa	Rorug02G0161100 Rorug02G0295400
rosa_samantha	Rh2AG348400 Rh2CG215500 Rh2CG334300
rosa_wichuraiana	Rw2G028290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	4, 506
AccI	GTMKAC	1 cut(s)	1071
AccIII	TCCGGA	1 cut(s)	900
AclWI	GGATC	1 cut(s)	963
AcsI	RAATTY	5 cut(s)	83, 206, 584, 641, 809
AcuI	CTGAAG	1 cut(s)	594
AfiI	CCNNNNNNNGG	2 cut(s)	147, 148
AgsI	TTSAA	7 cut(s)	34, 70, 131, 371, 583, 589, 832
AluBI	AGCT	4 cut(s)	313, 341, 560, 572
AluI	AGCT	4 cut(s)	313, 341, 560, 572
Alw21I	GWGCWC	1 cut(s)	562
Alw26I	GTCTC	1 cut(s)	813
AlwI	GGATC	1 cut(s)	963
Aor13HI	TCCGGA	1 cut(s)	900
ApeKI	GCWGC	2 cut(s)	137, 914
ApoI	RAATTY	5 cut(s)	83, 206, 584, 641, 809
AspS9I	GGNCC	2 cut(s)	471, 903
AsuHPI	GGTGA	5 cut(s)	107, 248, 658, 851, 1010
AvaII	GGWCC	2 cut(s)	471, 903
BanI	GGYRCC	2 cut(s)	4, 506
BanII	GRGCYC	1 cut(s)	562
BarI	GAAGNNNNNNTAC	2 cut(s)	611, 643
BbsI	GAAGAC	2 cut(s)	119, 241
Bbv12I	GWGCWC	1 cut(s)	562
BbvI	GCAGC	2 cut(s)	149, 926
BccI	CCATC	2 cut(s)	664, 719
BceAI	ACGGC	2 cut(s)	108, 150
BclI	TGATCA	1 cut(s)	49
BcoDI	GTCTC	1 cut(s)	813
BfaI	CTAG	5 cut(s)	245, 513, 674, 1083, 1092
BisI	GCNGC	2 cut(s)	138, 915
BlsI	GCNGC	2 cut(s)	139, 916
Bme18I	GGWCC	2 cut(s)	471, 903
BmgT120I	GGNCC	2 cut(s)	471, 903
BmiI	GGNNCC	2 cut(s)	6, 508
BpiI	GAAGAC	2 cut(s)	119, 241
BplI	GAGNNNNNCTC	2 cut(s)	72, 104
BpmI	CTGGAG	2 cut(s)	74, 372
BpuEI	CTTGAG	1 cut(s)	563
BsaJI	CCNNGG	2 cut(s)	100, 548
BsaWI	WCCGGW	1 cut(s)	900
Bsc4I	CCNNNNNNNGG	2 cut(s)	147, 148
Bse1I	ACTGG	2 cut(s)	118, 389
BseAI	TCCGGA	1 cut(s)	900
BseDI	CCNNGG	2 cut(s)	100, 548
BseGI	GGATG	2 cut(s)	973, 1051
BseLI	CCNNNNNNNGG	2 cut(s)	147, 148
BseMII	CTCAG	3 cut(s)	282, 318, 390
BseNI	ACTGG	2 cut(s)	118, 389
BseRI	GAGGAG	8 cut(s)	1007, 1037, 1040, 1043, 1046, 1049, 1052, 1055
BseXI	GCAGC	2 cut(s)	149, 926
BshNI	GGYRCC	2 cut(s)	4, 506
BsiHKAI	GWGCWC	1 cut(s)	562
BsiSI	CCGG	2 cut(s)	44, 901
BslI	CCNNNNNNNGG	2 cut(s)	147, 148
BsmAI	GTCTC	1 cut(s)	813
BsmI	GAATGC	1 cut(s)	578
Bsp1286I	GDGCHC	1 cut(s)	562
Bsp13I	TCCGGA	1 cut(s)	900
Bsp143I	GATC	3 cut(s)	49, 841, 955
Bsp19I	CCATGG	1 cut(s)	100
BspCNI	CTCAG	3 cut(s)	281, 319, 389
BspEI	TCCGGA	1 cut(s)	900
BspHI	TCATGA	2 cut(s)	958, 1060
BspLI	GGNNCC	2 cut(s)	6, 508
BspPI	GGATC	1 cut(s)	963
BspT107I	GGYRCC	2 cut(s)	4, 506
BsrI	ACTGG	2 cut(s)	118, 389
BssECI	CCNNGG	2 cut(s)	100, 548
BssMI	GATC	3 cut(s)	49, 841, 955
BssT1I	CCWWGG	1 cut(s)	100
Bst4CI	ACNGT	2 cut(s)	552, 1069
Bst6I	CTCTTC	3 cut(s)	159, 372, 1014
BstC8I	GCNNGC	1 cut(s)	747
BstDEI	CTNAG	3 cut(s)	268, 327, 376
BstDSI	CCRYGG	2 cut(s)	100, 548
BstF5I	GGATG	2 cut(s)	973, 1051
BstKTI	GATC	3 cut(s)	52, 844, 958
BstMAI	GTCTC	1 cut(s)	813
BstMBI	GATC	3 cut(s)	49, 841, 955
BstMWI	GCNNNNNNNGC	1 cut(s)	513
BstV1I	GCAGC	2 cut(s)	149, 926
BstV2I	GAAGAC	2 cut(s)	119, 241
BstXI	CCANNNNNNTGG	1 cut(s)	260
BtgI	CCRYGG	2 cut(s)	100, 548
BtsCI	GGATG	2 cut(s)	973, 1051
BtsIMutI	CAGTG	2 cut(s)	125, 396
Cac8I	GCNNGC	1 cut(s)	747
CciI	TCATGA	2 cut(s)	958, 1060
Cfr13I	GGNCC	2 cut(s)	471, 903
CspCI	CAANNNNNGTGG	2 cut(s)	179, 214
CviAII	CATG	8 cut(s)	101, 278, 563, 616, 670, 794, 959, 1061
DdeI	CTNAG	3 cut(s)	268, 327, 376
DpnI	GATC	3 cut(s)	51, 843, 957
DpnII	GATC	3 cut(s)	49, 841, 955
Eam1104I	CTCTTC	3 cut(s)	159, 372, 1014
EarI	CTCTTC	3 cut(s)	159, 372, 1014
Ecl136II	GAGCTC	1 cut(s)	560
Eco130I	CCWWGG	1 cut(s)	100
Eco24I	GRGCYC	1 cut(s)	562
Eco32I	GATATC	1 cut(s)	286
Eco47I	GGWCC	2 cut(s)	471, 903
Eco53kI	GAGCTC	1 cut(s)	560
Eco57I	CTGAAG	1 cut(s)	594
EcoICRI	GAGCTC	1 cut(s)	560
EcoRV	GATATC	1 cut(s)	286
EcoT14I	CCWWGG	1 cut(s)	100
EcoT38I	GRGCYC	1 cut(s)	562
ErhI	CCWWGG	1 cut(s)	100
FaeI	CATG	8 cut(s)	104, 281, 566, 619, 673, 797, 962, 1064
FatI	CATG	8 cut(s)	100, 277, 562, 615, 669, 793, 958, 1060
FbaI	TGATCA	1 cut(s)	49
FblI	GTMKAC	1 cut(s)	1071
Fnu4HI	GCNGC	2 cut(s)	138, 915
FokI	GGATG	2 cut(s)	980, 1058
FriOI	GRGCYC	1 cut(s)	562
Fsp4HI	GCNGC	2 cut(s)	138, 915
FspBI	CTAG	5 cut(s)	245, 513, 674, 1083, 1092
GluI	GCNGC	2 cut(s)	138, 915
GsuI	CTGGAG	2 cut(s)	74, 372
HapII	CCGG	2 cut(s)	44, 901
Hin1II	CATG	8 cut(s)	104, 281, 566, 619, 673, 797, 962, 1064
HincII	GTYRAC	1 cut(s)	1072
HindII	GTYRAC	1 cut(s)	1072
HinfI	GANTC	4 cut(s)	383, 525, 1055, 1088
HpaII	CCGG	2 cut(s)	44, 901
HphI	GGTGA	5 cut(s)	107, 248, 658, 851, 1010
Hpy166II	GTNNAC	4 cut(s)	57, 239, 666, 1072
Hpy188I	TCNGA	5 cut(s)	271, 379, 661, 724, 946
Hpy188III	TCNNGA	3 cut(s)	901, 959, 1061
Hpy8I	GTNNAC	4 cut(s)	57, 239, 666, 1072
Hpy99I	CGWCG	1 cut(s)	1073
HpyAV	CCTTC	4 cut(s)	606, 722, 937, 958
HpyCH4III	ACNGT	2 cut(s)	552, 1069
HpyCH4IV	ACGT	1 cut(s)	768
HpyCH4V	TGCA	3 cut(s)	214, 851, 924
HpyF10VI	GCNNNNNNNGC	1 cut(s)	513
HpyF3I	CTNAG	3 cut(s)	268, 327, 376
HpySE526I	ACGT	1 cut(s)	768
Hsp92II	CATG	8 cut(s)	104, 281, 566, 619, 673, 797, 962, 1064
Kpn2I	TCCGGA	1 cut(s)	900
Ksp22I	TGATCA	1 cut(s)	49
Kzo9I	GATC	3 cut(s)	49, 841, 955
Lsp1109I	GCAGC	2 cut(s)	149, 926
MaeI	CTAG	5 cut(s)	245, 513, 674, 1083, 1092
MaeII	ACGT	1 cut(s)	768
MaeIII	GTNAC	2 cut(s)	706, 769
MalI	GATC	3 cut(s)	51, 843, 957
MboI	GATC	3 cut(s)	49, 841, 955
MhlI	GDGCHC	1 cut(s)	562
MlyI	GAGTC	1 cut(s)	377
MroI	TCCGGA	1 cut(s)	900
MseI	TTAA	4 cut(s)	171, 227, 864, 881
MslI	CAYNNNNRTG	2 cut(s)	99, 674
MspI	CCGG	2 cut(s)	44, 901
Mva1269I	GAATGC	1 cut(s)	578
MwoI	GCNNNNNNNGC	1 cut(s)	513
NcoI	CCATGG	1 cut(s)	100
NdeII	GATC	3 cut(s)	49, 841, 955
NlaIII	CATG	8 cut(s)	104, 281, 566, 619, 673, 797, 962, 1064
NlaIV	GGNNCC	2 cut(s)	6, 508
PagI	TCATGA	2 cut(s)	958, 1060
PctI	GAATGC	1 cut(s)	578
PfeI	GAWTC	3 cut(s)	525, 1055, 1088
PkrI	GCNGC	2 cut(s)	139, 916
PleI	GAGTC	1 cut(s)	377
PpsI	GAGTC	1 cut(s)	377
Psp124BI	GAGCTC	1 cut(s)	562
PspN4I	GGNNCC	2 cut(s)	6, 508
PspPI	GGNCC	2 cut(s)	471, 903
RseI	CAYNNNNRTG	2 cut(s)	99, 674
SacI	GAGCTC	1 cut(s)	562
SalI	GTCGAC	1 cut(s)	1070
SaqAI	TTAA	4 cut(s)	171, 227, 864, 881
SatI	GCNGC	2 cut(s)	138, 915
Sau3AI	GATC	3 cut(s)	49, 841, 955
Sau96I	GGNCC	2 cut(s)	471, 903
SchI	GAGTC	1 cut(s)	377
SduI	GDGCHC	1 cut(s)	562
SinI	GGWCC	2 cut(s)	471, 903
SmiMI	CAYNNNNRTG	2 cut(s)	99, 674
SmlI	CTYRAG	1 cut(s)	542
SmoI	CTYRAG	1 cut(s)	542
SspMI	CTAG	5 cut(s)	245, 513, 674, 1083, 1092
SstI	GAGCTC	1 cut(s)	562
StyI	CCWWGG	1 cut(s)	100
TaaI	ACNGT	2 cut(s)	552, 1069
TaiI	ACGT	1 cut(s)	771
TaqI	TCGA	4 cut(s)	156, 431, 885, 1071
TfiI	GAWTC	3 cut(s)	525, 1055, 1088
Tru1I	TTAA	4 cut(s)	171, 227, 864, 881
Tru9I	TTAA	4 cut(s)	171, 227, 864, 881
TscAI	CASTG	2 cut(s)	125, 396
TseI	GCWGC	2 cut(s)	137, 914
TspDTI	ATGAA	9 cut(s)	219, 360, 464, 500, 632, 987, 1026, 1032, 1077
TspRI	CASTG	2 cut(s)	125, 396
VpaK11BI	GGWCC	2 cut(s)	471, 903
XapI	RAATTY	5 cut(s)	83, 206, 584, 641, 809
XcmI	CCANNNNNNNNNTGG	1 cut(s)	98
XmiI	GTMKAC	1 cut(s)	1071
XspI	CTAG	5 cut(s)	245, 513, 674, 1083, 1092

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.