Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0008738

Physical Location & Seq

Genomic Coordinates Forward (+)

21227547 .. 21228418

Gene Structure 872 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG215500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 207 bp

ATGCCTTTTCACGAACCTTGTATCGATCGCATTGCCGACACAGTTGGAAAGTACGAAGCTTTGGCTTGGCTTACTGGAAGTCTGAGCTGCTTCGTTGGGCTGGGCTTGTTAGCCTTGTGGAACGAGAAGGCGTCCAAAATTCCGTTTACCCCAAAAGTGTACCCATATGAGATTCTACGAATGTTTAGGGTTTTGATGATTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0016020 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

68

Amino Acids

7.79

Weight (kDa)

6.55

Isoelectric Point (pI)

36.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008738)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47570
fragaria_vesca	FvH4_6g27850 FvH4_6g27850
malus_domestica	MD09G1234000.v1.1 MD17G1263200.v1.1
prunus_persica	Prupe.3G111600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0326801 RchiOBHm_Chr2g0109601 RchiOBHm_Chr2g0112371 RchiOBHm_Chr2g0131201
rosa_laevigata	RLG00000019174 RLG00000030055
rosa_multiflora	Rmu_co8496245.1_g000001 Rmu_sc0000332.1_g000053 Rmu_sc0008093.1_g000004 Rmu_sc0025896.1_g000002
rosa_roxburghii	Rroxscaffold_2G00113140
rosa_rugosa	Rorug02G0161100 Rorug02G0295400
rosa_samantha	Rh2AG348400 Rh2CG215500 Rh2CG334300
rosa_wichuraiana	Rw2G028290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	138
AcyI	GRCGYC	1 cut(s)	131
AfaI	GTAC	2 cut(s)	53, 161
AgsI	TTSAA	1 cut(s)	203
AluBI	AGCT	2 cut(s)	59, 87
AluI	AGCT	2 cut(s)	59, 87
ApeKI	GCWGC	1 cut(s)	87
ApoI	RAATTY	1 cut(s)	138
BbvI	GCAGC	1 cut(s)	74
BcgI	CGANNNNNNTGC	2 cut(s)	14, 48
BisI	GCNGC	1 cut(s)	88
BlsI	GCNGC	1 cut(s)	89
Bsa29I	ATCGAT	1 cut(s)	24
BsaHI	GRCGYC	1 cut(s)	131
Bse1I	ACTGG	1 cut(s)	79
Bse3DI	GCAATG	1 cut(s)	30
BseCI	ATCGAT	1 cut(s)	24
BseMI	GCAATG	1 cut(s)	30
BseMII	CTCAG	1 cut(s)	74
BseNI	ACTGG	1 cut(s)	79
BseXI	GCAGC	1 cut(s)	74
BseYI	CCCAGC	1 cut(s)	100
Bsh1285I	CGRYCG	1 cut(s)	28
BshVI	ATCGAT	1 cut(s)	24
BsiEI	CGRYCG	1 cut(s)	28
Bsp143I	GATC	1 cut(s)	25
BspCNI	CTCAG	1 cut(s)	75
BspDI	ATCGAT	1 cut(s)	24
BsrDI	GCAATG	1 cut(s)	30
BsrI	ACTGG	1 cut(s)	79
BssMI	GATC	1 cut(s)	25
BssNI	GRCGYC	1 cut(s)	131
Bst4CI	ACNGT	1 cut(s)	43
BstACI	GRCGYC	1 cut(s)	131
BstDEI	CTNAG	1 cut(s)	83
BstKTI	GATC	1 cut(s)	28
BstMBI	GATC	1 cut(s)	25
BstMCI	CGRYCG	1 cut(s)	28
BstV1I	GCAGC	1 cut(s)	74
Bsu15I	ATCGAT	1 cut(s)	24
BsuTUI	ATCGAT	1 cut(s)	24
ClaI	ATCGAT	1 cut(s)	24
CseI	GACGC	1 cut(s)	120
Csp6I	GTAC	2 cut(s)	52, 160
CviJI	RGCY	7 cut(s)	59, 65, 70, 87, 100, 105, 113
CviKI_1	RGCY	7 cut(s)	59, 65, 70, 87, 100, 105, 113
CviQI	GTAC	2 cut(s)	52, 160
DdeI	CTNAG	1 cut(s)	83
DpnI	GATC	1 cut(s)	27
DpnII	GATC	1 cut(s)	25
FaiI	YATR	2 cut(s)	166, 168
FauNDI	CATATG	1 cut(s)	166
Fnu4HI	GCNGC	1 cut(s)	88
Fsp4HI	GCNGC	1 cut(s)	88
GluI	GCNGC	1 cut(s)	88
GsaI	CCCAGC	1 cut(s)	104
HgaI	GACGC	1 cut(s)	120
Hin1I	GRCGYC	1 cut(s)	131
HindIII	AAGCTT	1 cut(s)	57
HinfI	GANTC	1 cut(s)	172
Hpy166II	GTNNAC	2 cut(s)	147, 160
Hpy188I	TCNGA	1 cut(s)	84
Hpy188III	TCNNGA	1 cut(s)	11
Hpy8I	GTNNAC	2 cut(s)	147, 160
HpyAV	CCTTC	1 cut(s)	121
HpyCH4III	ACNGT	1 cut(s)	43
HpyF3I	CTNAG	1 cut(s)	83
Hsp92I	GRCGYC	1 cut(s)	131
Kzo9I	GATC	1 cut(s)	25
LpnPI	CCDG	2 cut(s)	60, 86
Lsp1109I	GCAGC	1 cut(s)	74
MalI	GATC	1 cut(s)	27
MboI	GATC	1 cut(s)	25
MluCI	AATT	1 cut(s)	138
MmeI	TCCRAC	1 cut(s)	25
NdeI	CATATG	1 cut(s)	166
NdeII	GATC	1 cut(s)	25
PfeI	GAWTC	1 cut(s)	172
PkrI	GCNGC	1 cut(s)	89
Ple19I	CGATCG	1 cut(s)	28
PspFI	CCCAGC	1 cut(s)	100
PvuI	CGATCG	1 cut(s)	28
RsaI	GTAC	2 cut(s)	53, 161
RsaNI	GTAC	2 cut(s)	52, 160
SatI	GCNGC	1 cut(s)	88
Sau3AI	GATC	1 cut(s)	25
SetI	ASST	3 cut(s)	19, 61, 89
SgeI	CNNG	8 cut(s)	23, 30, 78, 87, 113, 118, 127, 136
Sse9I	AATT	1 cut(s)	138
TaaI	ACNGT	1 cut(s)	43
TaqI	TCGA	1 cut(s)	24
TasI	AATT	1 cut(s)	138
TfiI	GAWTC	1 cut(s)	172
TseI	GCWGC	1 cut(s)	87
TspGWI	ACGGA	1 cut(s)	132
XapI	RAATTY	1 cut(s)	138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.