Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0008738

Physical Location & Seq

Genomic Coordinates Reverse (-)

32664543 .. 32674521

Gene Structure 9979 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0295400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGGCTGCTGAGCTTGTCAATTCTGCAACAAGTGAGAAACTGAGTGAAATGGATTGGACCAAGAATATTCAAATCTGTGAATTAGTTGCTCATGATAATAGACAAGCTAGAGATGTCATTAAAGCTATCAAGAAACGTCTGGGGAGTAAAAATGCAAATTCTCAACTTTATGCAGTTATGTTGCTGGAGATGTTGATGAACAACATTGGAGAACATATTCATAAGCAAGTGATCGAAGTTGGGATTCTTCCTAGTCTAGTGAAGATAGTCAAGAAAAAGTCGGACTTACCAGTGAGGGAGCGCATTTTTCTACTGCTAGATGCGACACAGACATCCCTTGGCGGTGCTTCTGGAAAGTTCCCTCAGTATTATACTGCTTATTACGACTTGGTGAGTGCTGGAATACAGTTCCCTCAAAGGCCTCCTCCGGTCCCTTCAAATTGCCAAGTACCAGAACCAGCTAAGAATAATTTACCTAACAGGGATAACGGGATTGCTCCACGAGTGGAGCCACATGATGTTCCTGAATCTAGTATTATTCAGAAGGCTGGTAATGCACTGGAGGTTTTGAAAGAGGTCCTTGATGCAGTTGATAGTCAGCATCCAGAGGGGGCAAAAGACGAATTCACACTTGATCTTGTGGAGCAATGTTCTTTCCAAAAGCAAAAAGTTATGCATCTTGTAATGACTTCTCGGGATGAGAAGGTAGTTTCTCAAGCTATCGAATTAAATGAGAAGCTCCAGAAGGTTCTTACAAGACATGATGCCCTGCTTTCTTGCAATTCTACATTGACTGTGAACCGTCTTATTGAAGAACAGGGAGAGGAGGAAGAAGAAGAGCCAGAACAGCTTGTTCGAAGGTTGCGGAAAGGAAAAGCTTGTGTGAGGCCTGAGGATGAAGAGCAGTCAGCTGAGCATTCCCACTTGGGTTTGCTTGGATCATCCAGGCCTGGGGAAAGGCTCAACCGTCCACTTATACGACCACTTTGCTTGGAGCCATCACCTGAATCAAATGGACATCCTCCACCTGTTGCTATTCCACCCCCACCTGCAAAGCACATTGAGAGGGAAAGATACTTCCAGGAAACCAAAGTGGATAGCTCTACTTTGGCTGGCCACGTCAGAGGTCTCTCATTACATAGTCGCAATGCAAGTAGCTCTCTCAGTGGAAGCATGGATTTTAGTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0016020 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

396

Amino Acids

44.07

Weight (kDa)

5.96

Isoelectric Point (pI)

60.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VHS	PF00790	4 - 110	2.5e-21	VHS domain
GAT	PF03127	187 - 258	3.4e-11	GAT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008738)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47570
fragaria_vesca	FvH4_6g27850 FvH4_6g27850
malus_domestica	MD09G1234000.v1.1 MD17G1263200.v1.1
prunus_persica	Prupe.3G111600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0326801 RchiOBHm_Chr2g0109601 RchiOBHm_Chr2g0112371 RchiOBHm_Chr2g0131201
rosa_laevigata	RLG00000019174 RLG00000030055
rosa_multiflora	Rmu_co8496245.1_g000001 Rmu_sc0000332.1_g000053 Rmu_sc0008093.1_g000004 Rmu_sc0025896.1_g000002
rosa_roxburghii	Rroxscaffold_2G00113140
rosa_rugosa	Rorug02G0161100 Rorug02G0295400
rosa_samantha	Rh2AG348400 Rh2CG215500 Rh2CG334300
rosa_wichuraiana	Rw2G028290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1057
Acc36I	ACCTGC	1 cut(s)	1057
AciI	CCGC	2 cut(s)	342, 865
AclWI	GGATC	1 cut(s)	946
AcoI	YGGCCR	1 cut(s)	1114
AcsI	RAATTY	2 cut(s)	157, 623
AfaI	GTAC	1 cut(s)	450
AfiI	CCNNNNNNNGG	1 cut(s)	951
AgsI	TTSAA	4 cut(s)	71, 438, 571, 812
AjiI	CACGTC	1 cut(s)	1120
AjnI	CCWGG	3 cut(s)	944, 949, 1080
Alw26I	GTCTC	1 cut(s)	1133
AlwI	GGATC	1 cut(s)	946
Ama87I	CYCGRG	1 cut(s)	693
AoxI	GGCC	4 cut(s)	419, 887, 947, 1114
ApeKI	GCWGC	1 cut(s)	5
ApoI	RAATTY	2 cut(s)	157, 623
Asp700I	GAANNNNTTC	1 cut(s)	216
AspLEI	GCGC	1 cut(s)	303
AspS9I	GGNCC	3 cut(s)	57, 430, 577
AsuHPI	GGTGA	2 cut(s)	403, 993
AsuII	TTCGAA	1 cut(s)	856
AvaI	CYCGRG	1 cut(s)	693
AvaII	GGWCC	3 cut(s)	57, 430, 577
AxyI	CCTNAGG	1 cut(s)	891
BalI	TGGCCA	1 cut(s)	1116
BauI	CACGAG	1 cut(s)	501
BccI	CCATC	1 cut(s)	1006
BcgI	CGANNNNNNTGC	2 cut(s)	969, 1003
BciT130I	CCWGG	3 cut(s)	946, 951, 1082
BcoDI	GTCTC	1 cut(s)	1133
BfaI	CTAG	5 cut(s)	108, 252, 257, 317, 531
BfuAI	ACCTGC	1 cut(s)	1057
BisI	GCNGC	1 cut(s)	6
BlpI	GCTNAGC	2 cut(s)	9, 912
BlsI	GCNGC	1 cut(s)	7
Bme1390I	CCNGG	3 cut(s)	946, 951, 1082
Bme18I	GGWCC	3 cut(s)	57, 430, 577
BmeT110I	CYCGRG	1 cut(s)	693
BmgBI	CACGTC	1 cut(s)	1120
BmgT120I	GGNCC	3 cut(s)	57, 430, 577
BmiI	GGNNCC	3 cut(s)	432, 510, 996
BmrFI	CCNGG	3 cut(s)	946, 951, 1082
BmsI	GCATC	5 cut(s)	310, 574, 610, 685, 754
BpmI	CTGGAG	3 cut(s)	206, 581, 725
Bpu1102I	GCTNAGC	2 cut(s)	9, 912
Bpu14I	TTCGAA	1 cut(s)	856
BpuEI	CTTGAG	1 cut(s)	699
BsaI	GGTCTC	1 cut(s)	1133
BsaJI	CCNNGG	2 cut(s)	337, 950
BsaWI	WCCGGW	1 cut(s)	427
Bsc4I	CCNNNNNNNGG	1 cut(s)	951
Bse1I	ACTGG	2 cut(s)	290, 564
Bse21I	CCTNAGG	1 cut(s)	891
Bse3DI	GCAATG	2 cut(s)	653, 1153
BseBI	CCWGG	3 cut(s)	946, 951, 1082
BseDI	CCNNGG	2 cut(s)	337, 950
BseGI	GGATG	6 cut(s)	332, 601, 703, 901, 941, 1018
BseLI	CCNNNNNNNGG	1 cut(s)	951
BseMI	GCAATG	2 cut(s)	653, 1153
BseMII	CTCAG	5 cut(s)	32, 377, 882, 903, 1177
BseNI	ACTGG	2 cut(s)	290, 564
BseRI	GAGGAG	2 cut(s)	414, 839
BshFI	GGCC	4 cut(s)	421, 889, 949, 1116
BsiHKCI	CYCGRG	1 cut(s)	693
BsiSI	CCGG	1 cut(s)	428
BslFI	GGGAC	1 cut(s)	416
BslI	CCNNNNNNNGG	1 cut(s)	951
BsmAI	GTCTC	1 cut(s)	1133
BsmFI	GGGAC	1 cut(s)	416
BsmI	GAATGC	1 cut(s)	916
BsnI	GGCC	4 cut(s)	421, 889, 949, 1116
Bso31I	GGTCTC	1 cut(s)	1133
BsoBI	CYCGRG	1 cut(s)	693
Bsp119I	TTCGAA	1 cut(s)	856
Bsp143I	GATC	3 cut(s)	231, 634, 938
Bsp1720I	GCTNAGC	2 cut(s)	9, 912
BspACI	CCGC	2 cut(s)	342, 865
BspANI	GGCC	4 cut(s)	421, 889, 949, 1116
BspCNI	CTCAG	5 cut(s)	33, 376, 883, 904, 1176
BspHI	TCATGA	1 cut(s)	91
BspLI	GGNNCC	3 cut(s)	432, 510, 996
BspMI	ACCTGC	1 cut(s)	1057
BspPI	GGATC	1 cut(s)	946
BspQI	GCTCTTC	2 cut(s)	831, 894
BspT104I	TTCGAA	1 cut(s)	856
BspTNI	GGTCTC	1 cut(s)	1133
BsrDI	GCAATG	2 cut(s)	653, 1153
BsrI	ACTGG	2 cut(s)	290, 564
BssECI	CCNNGG	2 cut(s)	337, 950
BssMI	GATC	3 cut(s)	231, 634, 938
BssSI	CACGAG	1 cut(s)	501
BssT1I	CCWWGG	1 cut(s)	337
Bst2BI	CACGAG	1 cut(s)	501
Bst2UI	CCWGG	3 cut(s)	946, 951, 1082
Bst4CI	ACNGT	4 cut(s)	408, 796, 803, 968
Bst6I	CTCTTC	2 cut(s)	831, 894
BstBI	TTCGAA	1 cut(s)	856
BstC8I	GCNNGC	1 cut(s)	1114
BstDEI	CTNAG	7 cut(s)	9, 41, 363, 462, 891, 912, 1163
BstF5I	GGATG	6 cut(s)	332, 601, 703, 901, 941, 1018
BstHHI	GCGC	1 cut(s)	303
BstKTI	GATC	3 cut(s)	234, 637, 941
BstMAI	GTCTC	1 cut(s)	1133
BstMBI	GATC	3 cut(s)	231, 634, 938
BstMWI	GCNNNNNNNGC	2 cut(s)	554, 847
BstNI	CCWGG	3 cut(s)	946, 951, 1082
BstSCI	CCNGG	3 cut(s)	944, 949, 1080
Bsu36I	CCTNAGG	1 cut(s)	891
BsuRI	GGCC	4 cut(s)	421, 889, 949, 1116
BtrI	CACGTC	1 cut(s)	1120
BtsCI	GGATG	6 cut(s)	332, 601, 703, 901, 941, 1018
BtsIMutI	CAGTG	3 cut(s)	297, 557, 1171
BveI	ACCTGC	1 cut(s)	1057
Cac8I	GCNNGC	1 cut(s)	1114
CciI	TCATGA	1 cut(s)	91
CfoI	GCGC	1 cut(s)	303
Cfr13I	GGNCC	3 cut(s)	57, 430, 577
Csp6I	GTAC	1 cut(s)	449
CspCI	CAANNNNNGTGG	2 cut(s)	972, 1007
CviAII	CATG	4 cut(s)	92, 515, 761, 1174
CviQI	GTAC	1 cut(s)	449
DdeI	CTNAG	7 cut(s)	9, 41, 363, 462, 891, 912, 1163
DpnI	GATC	3 cut(s)	233, 636, 940
DpnII	GATC	3 cut(s)	231, 634, 938
EaeI	YGGCCR	1 cut(s)	1114
Eam1104I	CTCTTC	2 cut(s)	831, 894
EarI	CTCTTC	2 cut(s)	831, 894
Eco130I	CCWWGG	1 cut(s)	337
Eco147I	AGGCCT	3 cut(s)	421, 889, 949
Eco31I	GGTCTC	1 cut(s)	1133
Eco47I	GGWCC	3 cut(s)	57, 430, 577
Eco81I	CCTNAGG	1 cut(s)	891
Eco88I	CYCGRG	1 cut(s)	693
EcoO109I	RGGNCCY	1 cut(s)	577
EcoRI	GAATTC	1 cut(s)	623
EcoRII	CCWGG	3 cut(s)	944, 949, 1080
EcoT14I	CCWWGG	1 cut(s)	337
EcoT22I	ATGCAT	1 cut(s)	678
ErhI	CCWWGG	1 cut(s)	337
FaeI	CATG	4 cut(s)	95, 518, 764, 1177
FalI	AAGNNNNNCTT	4 cut(s)	269, 301, 564, 596
FaqI	GGGAC	1 cut(s)	416
FatI	CATG	4 cut(s)	91, 514, 760, 1173
Fnu4HI	GCNGC	1 cut(s)	6
FokI	GGATG	6 cut(s)	319, 588, 710, 908, 928, 1005
Fsp4HI	GCNGC	1 cut(s)	6
FspBI	CTAG	5 cut(s)	108, 252, 257, 317, 531
GlaI	GCGC	1 cut(s)	302
GluI	GCNGC	1 cut(s)	6
GsuI	CTGGAG	3 cut(s)	206, 581, 725
HaeIII	GGCC	4 cut(s)	421, 889, 949, 1116
HapII	CCGG	1 cut(s)	428
HhaI	GCGC	1 cut(s)	303
Hin1II	CATG	4 cut(s)	95, 518, 764, 1177
Hin6I	GCGC	1 cut(s)	301
HinP1I	GCGC	1 cut(s)	301
HindIII	AAGCTT	1 cut(s)	876
HinfI	GANTC	3 cut(s)	244, 527, 1007
HpaII	CCGG	1 cut(s)	428
HphI	GGTGA	2 cut(s)	403, 993
Hpy166II	GTNNAC	2 cut(s)	799, 971
Hpy188I	TCNGA	3 cut(s)	283, 543, 1124
Hpy188III	TCNNGA	8 cut(s)	92, 130, 271, 351, 524, 605, 695, 742
Hpy8I	GTNNAC	2 cut(s)	799, 971
HpyAV	CCTTC	5 cut(s)	444, 538, 697, 739, 852
HpyCH4III	ACNGT	4 cut(s)	408, 796, 803, 968
HpyCH4IV	ACGT	2 cut(s)	136, 1119
HpyCH4V	TGCA	9 cut(s)	26, 155, 173, 557, 587, 676, 780, 1052, 1151
HpyF10VI	GCNNNNNNNGC	2 cut(s)	554, 847
HpyF3I	CTNAG	7 cut(s)	9, 41, 363, 462, 891, 912, 1163
HpySE526I	ACGT	2 cut(s)	136, 1119
Hsp92II	CATG	4 cut(s)	95, 518, 764, 1177
HspAI	GCGC	1 cut(s)	301
Kzo9I	GATC	3 cut(s)	231, 634, 938
LguI	GCTCTTC	2 cut(s)	831, 894
LmnI	GCTCC	6 cut(s)	298, 502, 508, 643, 744, 994
LweI	GCATC	5 cut(s)	310, 574, 610, 685, 754
MaeI	CTAG	5 cut(s)	108, 252, 257, 317, 531
MaeII	ACGT	2 cut(s)	136, 1119
MaeIII	GTNAC	1 cut(s)	1184
MalI	GATC	3 cut(s)	233, 636, 940
MboI	GATC	3 cut(s)	231, 634, 938
MboII	GAAGA	7 cut(s)	239, 274, 824, 842, 845, 848, 911
MlsI	TGGCCA	1 cut(s)	1116
MluCI	AATT	8 cut(s)	19, 80, 157, 439, 469, 623, 725, 781
MluNI	TGGCCA	1 cut(s)	1116
MmeI	TCCRAC	1 cut(s)	261
Mox20I	TGGCCA	1 cut(s)	1116
Mph1103I	ATGCAT	1 cut(s)	678
MroXI	GAANNNNTTC	1 cut(s)	216
MscI	TGGCCA	1 cut(s)	1116
MseI	TTAA	2 cut(s)	120, 728
Msp20I	TGGCCA	1 cut(s)	1116
MspA1I	CMGCKG	1 cut(s)	911
MspI	CCGG	1 cut(s)	428
MspR9I	CCNGG	3 cut(s)	946, 951, 1082
Mva1269I	GAATGC	1 cut(s)	916
MvaI	CCWGG	3 cut(s)	946, 951, 1082
MwoI	GCNNNNNNNGC	2 cut(s)	554, 847
NdeII	GATC	3 cut(s)	231, 634, 938
NlaIII	CATG	4 cut(s)	95, 518, 764, 1177
NlaIV	GGNNCC	3 cut(s)	432, 510, 996
NmuCI	GTSAC	1 cut(s)	1184
NsiI	ATGCAT	1 cut(s)	678
NspV	TTCGAA	1 cut(s)	856
PagI	TCATGA	1 cut(s)	91
PaqCI	CACCTGC	1 cut(s)	1057
PceI	AGGCCT	3 cut(s)	421, 889, 949
PciSI	GCTCTTC	2 cut(s)	831, 894
PctI	GAATGC	1 cut(s)	916
PdmI	GAANNNNTTC	1 cut(s)	216
PfeI	GAWTC	3 cut(s)	244, 527, 1007
PfoI	TCCNGGA	1 cut(s)	1080
PkrI	GCNGC	1 cut(s)	7
PpuMI	RGGWCCY	1 cut(s)	577
Psp5II	RGGWCCY	1 cut(s)	577
Psp6I	CCWGG	3 cut(s)	944, 949, 1080
PspGI	CCWGG	3 cut(s)	944, 949, 1080
PspN4I	GGNNCC	3 cut(s)	432, 510, 996
PspPI	GGNCC	3 cut(s)	57, 430, 577
PspPPI	RGGWCCY	1 cut(s)	577
PvuII	CAGCTG	1 cut(s)	911
RsaI	GTAC	1 cut(s)	450
RsaNI	GTAC	1 cut(s)	449
SapI	GCTCTTC	2 cut(s)	831, 894
SaqAI	TTAA	2 cut(s)	120, 728
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	3 cut(s)	231, 634, 938
Sau96I	GGNCC	3 cut(s)	57, 430, 577
ScrFI	CCNGG	3 cut(s)	946, 951, 1082
SfaNI	GCATC	5 cut(s)	310, 574, 610, 685, 754
SfuI	TTCGAA	1 cut(s)	856
SinI	GGWCC	3 cut(s)	57, 430, 577
SmlI	CTYRAG	1 cut(s)	714
SmoI	CTYRAG	1 cut(s)	714
Sse9I	AATT	8 cut(s)	19, 80, 157, 439, 469, 623, 725, 781
SseBI	AGGCCT	3 cut(s)	421, 889, 949
SsiI	CCGC	2 cut(s)	342, 865
SspI	AATATT	1 cut(s)	67
SspMI	CTAG	5 cut(s)	108, 252, 257, 317, 531
StuI	AGGCCT	3 cut(s)	421, 889, 949
StyD4I	CCNGG	3 cut(s)	944, 949, 1080
StyI	CCWWGG	1 cut(s)	337
TaaI	ACNGT	4 cut(s)	408, 796, 803, 968
TaiI	ACGT	2 cut(s)	139, 1122
TaqI	TCGA	3 cut(s)	234, 723, 856
TasI	AATT	8 cut(s)	19, 80, 157, 439, 469, 623, 725, 781
TfiI	GAWTC	3 cut(s)	244, 527, 1007
Tru1I	TTAA	2 cut(s)	120, 728
Tru9I	TTAA	2 cut(s)	120, 728
TscAI	CASTG	3 cut(s)	297, 564, 1171
TseFI	GTSAC	1 cut(s)	1184
TseI	GCWGC	1 cut(s)	5
Tsp45I	GTSAC	1 cut(s)	1184
TspDTI	ATGAA	3 cut(s)	209, 212, 912
TspRI	CASTG	3 cut(s)	297, 564, 1171
VpaK11BI	GGWCC	3 cut(s)	57, 430, 577
XapI	RAATTY	2 cut(s)	157, 623
XmnI	GAANNNNTTC	1 cut(s)	216
XspI	CTAG	5 cut(s)	108, 252, 257, 317, 531
Zsp2I	ATGCAT	1 cut(s)	678

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.