Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000332.1

Orthogroup ID

OG0008738

Physical Location & Seq

Genomic Coordinates Forward (+)

244105 .. 244386

Gene Structure 282 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000332.1_g000053.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

atgggcctccccatcggtaaacacatcgtccctgacaaactgctctgcgtcaaagacgagctcgtctgggacaacgacacaccttttcacgaaccttgtatcgatcacatcactgacaccgttgggaaatacgaagctttggcttggcttactggaagtctaagctgcttcattgggctgggcttgttagccgtgtggaacgacaaggcgtccaaaattctgtttaccccaaaaatgtacccatatgagaatctacgagtggagctcgggggagaaccatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0016020 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

93

Amino Acids

10.4

Weight (kDa)

4.95

Isoelectric Point (pI)

32.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008738)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47570
fragaria_vesca	FvH4_6g27850 FvH4_6g27850
malus_domestica	MD09G1234000.v1.1 MD17G1263200.v1.1
prunus_persica	Prupe.3G111600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0326801 RchiOBHm_Chr2g0109601 RchiOBHm_Chr2g0112371 RchiOBHm_Chr2g0131201
rosa_laevigata	RLG00000019174 RLG00000030055
rosa_multiflora	Rmu_co8496245.1_g000001 Rmu_sc0000332.1_g000053 Rmu_sc0008093.1_g000004 Rmu_sc0025896.1_g000002
rosa_roxburghii	Rroxscaffold_2G00113140
rosa_rugosa	Rorug02G0161100 Rorug02G0295400
rosa_samantha	Rh2AG348400 Rh2CG215500 Rh2CG334300
rosa_wichuraiana	Rw2G028290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	62
AcsI	RAATTY	1 cut(s)	216
AcyI	GRCGYC	1 cut(s)	209
AfaI	GTAC	1 cut(s)	239
AhdI	GACNNNNNGTC	1 cut(s)	208
AluBI	AGCT	4 cut(s)	61, 137, 165, 265
AluI	AGCT	4 cut(s)	61, 137, 165, 265
Alw21I	GWGCWC	2 cut(s)	63, 267
Ama87I	CYCGRG	1 cut(s)	266
AoxI	GGCC	1 cut(s)	4
ApeKI	GCWGC	1 cut(s)	165
ApoI	RAATTY	1 cut(s)	216
AspS9I	GGNCC	1 cut(s)	4
AvaI	CYCGRG	1 cut(s)	266
BanII	GRGCYC	2 cut(s)	63, 267
Bbv12I	GWGCWC	2 cut(s)	63, 267
BbvI	GCAGC	1 cut(s)	152
BccI	CCATC	1 cut(s)	20
BceAI	ACGGC	1 cut(s)	176
BisI	GCNGC	1 cut(s)	166
BlsI	GCNGC	1 cut(s)	167
BmeRI	GACNNNNNGTC	1 cut(s)	208
BmeT110I	CYCGRG	1 cut(s)	266
BmgT120I	GGNCC	1 cut(s)	4
BplI	GAGNNNNNCTC	2 cut(s)	249, 281
Bsa29I	ATCGAT	1 cut(s)	102
BsaHI	GRCGYC	1 cut(s)	209
Bse1I	ACTGG	1 cut(s)	157
BseCI	ATCGAT	1 cut(s)	102
BseNI	ACTGG	1 cut(s)	157
BseXI	GCAGC	1 cut(s)	152
BseYI	CCCAGC	1 cut(s)	178
BshFI	GGCC	1 cut(s)	6
BshVI	ATCGAT	1 cut(s)	102
BsiHKAI	GWGCWC	2 cut(s)	63, 267
BsiHKCI	CYCGRG	1 cut(s)	266
BslFI	GGGAC	2 cut(s)	14, 83
BsmFI	GGGAC	2 cut(s)	14, 83
BsnI	GGCC	1 cut(s)	6
BsoBI	CYCGRG	1 cut(s)	266
Bsp1286I	GDGCHC	2 cut(s)	63, 267
Bsp143I	GATC	1 cut(s)	103
BspANI	GGCC	1 cut(s)	6
BspDI	ATCGAT	1 cut(s)	102
BsrI	ACTGG	1 cut(s)	157
BssMI	GATC	1 cut(s)	103
BssNI	GRCGYC	1 cut(s)	209
Bst4CI	ACNGT	1 cut(s)	121
BstACI	GRCGYC	1 cut(s)	209
BstDEI	CTNAG	1 cut(s)	161
BstKTI	GATC	1 cut(s)	106
BstMBI	GATC	1 cut(s)	103
BstV1I	GCAGC	1 cut(s)	152
Bsu15I	ATCGAT	1 cut(s)	102
BsuRI	GGCC	1 cut(s)	6
BsuTUI	ATCGAT	1 cut(s)	102
BtsIMutI	CAGTG	1 cut(s)	111
Cfr13I	GGNCC	1 cut(s)	4
ClaI	ATCGAT	1 cut(s)	102
CseI	GACGC	2 cut(s)	37, 198
Csp6I	GTAC	1 cut(s)	238
CviQI	GTAC	1 cut(s)	238
DdeI	CTNAG	1 cut(s)	161
DpnI	GATC	1 cut(s)	105
DpnII	GATC	1 cut(s)	103
DrdI	GACNNNNNNGTC	1 cut(s)	62
DriI	GACNNNNNGTC	1 cut(s)	208
DseDI	GACNNNNNNGTC	1 cut(s)	62
Eam1105I	GACNNNNNGTC	1 cut(s)	208
Ecl136II	GAGCTC	2 cut(s)	61, 265
Eco24I	GRGCYC	2 cut(s)	63, 267
Eco53kI	GAGCTC	2 cut(s)	61, 265
Eco88I	CYCGRG	1 cut(s)	266
EcoICRI	GAGCTC	2 cut(s)	61, 265
EcoT38I	GRGCYC	2 cut(s)	63, 267
FaiI	YATR	3 cut(s)	244, 246, 280
FaqI	GGGAC	2 cut(s)	14, 83
FauNDI	CATATG	1 cut(s)	244
Fnu4HI	GCNGC	1 cut(s)	166
FriOI	GRGCYC	2 cut(s)	63, 267
Fsp4HI	GCNGC	1 cut(s)	166
GluI	GCNGC	1 cut(s)	166
GsaI	CCCAGC	1 cut(s)	182
HaeIII	GGCC	1 cut(s)	6
HgaI	GACGC	2 cut(s)	37, 198
Hin1I	GRCGYC	1 cut(s)	209
HindIII	AAGCTT	1 cut(s)	135
HinfI	GANTC	1 cut(s)	250
Hpy166II	GTNNAC	2 cut(s)	20, 225
Hpy188III	TCNNGA	1 cut(s)	89
Hpy8I	GTNNAC	2 cut(s)	20, 225
HpyCH4III	ACNGT	1 cut(s)	121
HpyF3I	CTNAG	1 cut(s)	161
Hsp92I	GRCGYC	1 cut(s)	209
Kzo9I	GATC	1 cut(s)	103
LmnI	GCTCC	1 cut(s)	262
LpnPI	CCDG	4 cut(s)	45, 52, 138, 164
Lsp1109I	GCAGC	1 cut(s)	152
MalI	GATC	1 cut(s)	105
MboI	GATC	1 cut(s)	103
MhlI	GDGCHC	2 cut(s)	63, 267
MluCI	AATT	1 cut(s)	216
MnlI	CCTC	1 cut(s)	17
NdeI	CATATG	1 cut(s)	244
NdeII	GATC	1 cut(s)	103
PfeI	GAWTC	1 cut(s)	250
PkrI	GCNGC	1 cut(s)	167
Psp124BI	GAGCTC	2 cut(s)	63, 267
PspFI	CCCAGC	1 cut(s)	178
PspPI	GGNCC	1 cut(s)	4
RsaI	GTAC	1 cut(s)	239
RsaNI	GTAC	1 cut(s)	238
SacI	GAGCTC	2 cut(s)	63, 267
SatI	GCNGC	1 cut(s)	166
Sau3AI	GATC	1 cut(s)	103
Sau96I	GGNCC	1 cut(s)	4
SduI	GDGCHC	2 cut(s)	63, 267
SetI	ASST	6 cut(s)	63, 85, 97, 139, 167, 267
Sse9I	AATT	1 cut(s)	216
SstI	GAGCTC	2 cut(s)	63, 267
TaaI	ACNGT	1 cut(s)	121
TaqI	TCGA	1 cut(s)	102
TasI	AATT	1 cut(s)	216
TfiI	GAWTC	1 cut(s)	250
TscAI	CASTG	1 cut(s)	118
TseI	GCWGC	1 cut(s)	165
TspDTI	ATGAA	1 cut(s)	160
TspRI	CASTG	1 cut(s)	118
XapI	RAATTY	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.