Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0008738

Physical Location & Seq

Genomic Coordinates Reverse (-)

29402104 .. 29402481

Gene Structure 378 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1234000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGCAGGGAGATTGAGCAGCGTAATTTCCAGAATCATGGGCGGAAGCGGCATCGTCTCACGTTCAGCCACTTCCTCTCTTTGTCTCCGCGCCGGCATGGGCCTTCCCGTCGGTAAGCATATCGTCCCCGACAGGCCCCTTCCCGTAAACGATGAGCTCGTCTGGGATGACGGCACGTCGTTTCCCGAACCCTGCATCGATCGAATCACCGACACCGTAGGAAAGTACGAAGCTTTGGCTTGGCTCTGTGGGAGTTTGAGCTGCTTTGCTAGTTTGGGTTTGTTGGCCGTGTGGAACGACAAGGCGTCCAAGATCCCATTTGCCCCAAAAGTATACCCCTACGACAACCTGCAAGTGGAGCTCGGCGGAGAACCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0016020 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

126

Amino Acids

13.32

Weight (kDa)

5.25

Isoelectric Point (pI)

43.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008738)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47570
fragaria_vesca	FvH4_6g27850 FvH4_6g27850
malus_domestica	MD09G1234000.v1.1 MD17G1263200.v1.1
prunus_persica	Prupe.3G111600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0326801 RchiOBHm_Chr2g0109601 RchiOBHm_Chr2g0112371 RchiOBHm_Chr2g0131201
rosa_laevigata	RLG00000019174 RLG00000030055
rosa_multiflora	Rmu_co8496245.1_g000001 Rmu_sc0000332.1_g000053 Rmu_sc0008093.1_g000004 Rmu_sc0025896.1_g000002
rosa_roxburghii	Rroxscaffold_2G00113140
rosa_rugosa	Rorug02G0161100 Rorug02G0295400
rosa_samantha	Rh2AG348400 Rh2CG215500 Rh2CG334300
rosa_wichuraiana	Rw2G028290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	357
AccI	GTMKAC	1 cut(s)	333
AccII	CGCG	1 cut(s)	90
AciI	CCGC	4 cut(s)	42, 48, 88, 366
AclWI	GGATC	1 cut(s)	307
AcoI	YGGCCR	1 cut(s)	285
AcyI	GRCGYC	1 cut(s)	305
AfaI	GTAC	1 cut(s)	227
AfiI	CCNNNNNNNGG	1 cut(s)	355
AhdI	GACNNNNNGTC	2 cut(s)	175, 304
AjiI	CACGTC	1 cut(s)	177
AluBI	AGCT	4 cut(s)	157, 233, 261, 361
AluI	AGCT	4 cut(s)	157, 233, 261, 361
Alw21I	GWGCWC	2 cut(s)	159, 363
Alw26I	GTCTC	2 cut(s)	61, 89
AlwI	GGATC	1 cut(s)	307
AoxI	GGCC	3 cut(s)	100, 134, 285
ApeKI	GCWGC	2 cut(s)	18, 261
AspLEI	GCGC	1 cut(s)	92
AspS9I	GGNCC	2 cut(s)	100, 135
AsuHPI	GGTGA	1 cut(s)	199
BanII	GRGCYC	2 cut(s)	159, 363
Bbv12I	GWGCWC	2 cut(s)	159, 363
BbvI	GCAGC	2 cut(s)	30, 248
BceAI	ACGGC	2 cut(s)	187, 272
BcoDI	GTCTC	2 cut(s)	61, 89
BfaI	CTAG	1 cut(s)	270
BfuAI	ACCTGC	1 cut(s)	357
BisI	GCNGC	3 cut(s)	19, 49, 262
BlsI	GCNGC	3 cut(s)	20, 50, 263
BmeRI	GACNNNNNGTC	2 cut(s)	175, 304
BmgBI	CACGTC	1 cut(s)	177
BmgT120I	GGNCC	2 cut(s)	100, 135
BmiI	GGNNCC	1 cut(s)	137
BmsI	GCATC	2 cut(s)	60, 204
Bsa29I	ATCGAT	1 cut(s)	198
BsaHI	GRCGYC	1 cut(s)	305
Bsc4I	CCNNNNNNNGG	1 cut(s)	355
Bse118I	RCCGGY	1 cut(s)	92
BseCI	ATCGAT	1 cut(s)	198
BseGI	GGATG	1 cut(s)	172
BseLI	CCNNNNNNNGG	1 cut(s)	355
BseXI	GCAGC	2 cut(s)	30, 248
Bsh1236I	CGCG	1 cut(s)	90
Bsh1285I	CGRYCG	1 cut(s)	202
BshFI	GGCC	3 cut(s)	102, 136, 287
BshVI	ATCGAT	1 cut(s)	198
BsiEI	CGRYCG	1 cut(s)	202
BsiHKAI	GWGCWC	2 cut(s)	159, 363
BsiSI	CCGG	1 cut(s)	93
BslFI	GGGAC	1 cut(s)	110
BslI	CCNNNNNNNGG	1 cut(s)	355
BsmAI	GTCTC	2 cut(s)	61, 89
BsmBI	CGTCTC	1 cut(s)	61
BsmFI	GGGAC	1 cut(s)	110
BsnI	GGCC	3 cut(s)	102, 136, 287
Bsp1286I	GDGCHC	2 cut(s)	159, 363
Bsp143I	GATC	2 cut(s)	199, 312
BspACI	CCGC	4 cut(s)	42, 48, 88, 366
BspANI	GGCC	3 cut(s)	102, 136, 287
BspDI	ATCGAT	1 cut(s)	198
BspFNI	CGCG	1 cut(s)	90
BspLI	GGNNCC	1 cut(s)	137
BspMI	ACCTGC	1 cut(s)	357
BspPI	GGATC	1 cut(s)	307
BsrFI	RCCGGY	1 cut(s)	92
BssAI	RCCGGY	1 cut(s)	92
BssMI	GATC	2 cut(s)	199, 312
BssNAI	GTATAC	1 cut(s)	334
BssNI	GRCGYC	1 cut(s)	305
Bst1107I	GTATAC	1 cut(s)	334
Bst4CI	ACNGT	2 cut(s)	217, 375
BstACI	GRCGYC	1 cut(s)	305
BstC8I	GCNNGC	1 cut(s)	94
BstF5I	GGATG	1 cut(s)	172
BstFNI	CGCG	1 cut(s)	90
BstHHI	GCGC	1 cut(s)	92
BstKTI	GATC	2 cut(s)	202, 315
BstMAI	GTCTC	2 cut(s)	61, 89
BstMBI	GATC	2 cut(s)	199, 312
BstMCI	CGRYCG	1 cut(s)	202
BstMWI	GCNNNNNNNGC	2 cut(s)	48, 358
BstUI	CGCG	1 cut(s)	90
BstV1I	GCAGC	2 cut(s)	30, 248
BstX2I	RGATCY	1 cut(s)	312
BstXI	CCANNNNNNTGG	1 cut(s)	37
BstYI	RGATCY	1 cut(s)	312
BstZ17I	GTATAC	1 cut(s)	334
Bsu15I	ATCGAT	1 cut(s)	198
BsuRI	GGCC	3 cut(s)	102, 136, 287
BsuTUI	ATCGAT	1 cut(s)	198
BtrI	CACGTC	1 cut(s)	177
BtsCI	GGATG	1 cut(s)	172
BveI	ACCTGC	1 cut(s)	357
Cac8I	GCNNGC	1 cut(s)	94
CfoI	GCGC	1 cut(s)	92
Cfr10I	RCCGGY	1 cut(s)	92
Cfr13I	GGNCC	2 cut(s)	100, 135
ClaI	ATCGAT	1 cut(s)	198
CseI	GACGC	1 cut(s)	294
Csp6I	GTAC	1 cut(s)	226
CviAII	CATG	2 cut(s)	37, 97
CviQI	GTAC	1 cut(s)	226
DpnI	GATC	2 cut(s)	201, 314
DpnII	GATC	2 cut(s)	199, 312
DriI	GACNNNNNGTC	2 cut(s)	175, 304
EaeI	YGGCCR	1 cut(s)	285
Eam1105I	GACNNNNNGTC	2 cut(s)	175, 304
EciI	GGCGGA	1 cut(s)	57
Ecl136II	GAGCTC	2 cut(s)	157, 361
Eco24I	GRGCYC	2 cut(s)	159, 363
Eco53kI	GAGCTC	2 cut(s)	157, 361
EcoICRI	GAGCTC	2 cut(s)	157, 361
EcoO109I	RGGNCCY	1 cut(s)	135
EcoT38I	GRGCYC	2 cut(s)	159, 363
Esp3I	CGTCTC	1 cut(s)	61
FaeI	CATG	2 cut(s)	40, 100
FaiI	YATR	4 cut(s)	38, 98, 120, 334
FaqI	GGGAC	1 cut(s)	110
FatI	CATG	2 cut(s)	36, 96
FblI	GTMKAC	1 cut(s)	333
Fnu4HI	GCNGC	3 cut(s)	19, 49, 262
FokI	GGATG	1 cut(s)	179
FriOI	GRGCYC	2 cut(s)	159, 363
Fsp4HI	GCNGC	3 cut(s)	19, 49, 262
FspBI	CTAG	1 cut(s)	270
GlaI	GCGC	1 cut(s)	91
GluI	GCNGC	3 cut(s)	19, 49, 262
HaeIII	GGCC	3 cut(s)	102, 136, 287
HapII	CCGG	1 cut(s)	93
HgaI	GACGC	1 cut(s)	294
HhaI	GCGC	1 cut(s)	92
Hin1I	GRCGYC	1 cut(s)	305
Hin1II	CATG	2 cut(s)	40, 100
Hin6I	GCGC	1 cut(s)	90
HinP1I	GCGC	1 cut(s)	90
HindIII	AAGCTT	1 cut(s)	231
HinfI	GANTC	2 cut(s)	33, 204
HpaII	CCGG	1 cut(s)	93
HphI	GGTGA	1 cut(s)	199
Hpy166II	GTNNAC	2 cut(s)	148, 334
Hpy188III	TCNNGA	2 cut(s)	30, 185
Hpy8I	GTNNAC	2 cut(s)	148, 334
Hpy99I	CGWCG	2 cut(s)	113, 181
HpyAV	CCTTC	2 cut(s)	113, 149
HpyCH4III	ACNGT	2 cut(s)	217, 375
HpyCH4IV	ACGT	2 cut(s)	61, 176
HpyCH4V	TGCA	2 cut(s)	195, 352
HpyF10VI	GCNNNNNNNGC	2 cut(s)	48, 358
HpySE526I	ACGT	2 cut(s)	61, 176
Hsp92I	GRCGYC	1 cut(s)	305
Hsp92II	CATG	2 cut(s)	40, 100
HspAI	GCGC	1 cut(s)	90
KroI	GCCGGC	1 cut(s)	92
KroNI	GCCGGC	1 cut(s)	94
Kzo9I	GATC	2 cut(s)	199, 312
LmnI	GCTCC	1 cut(s)	358
LpnPI	CCDG	6 cut(s)	43, 106, 118, 148, 205, 362
Lsp1109I	GCAGC	2 cut(s)	30, 248
LweI	GCATC	2 cut(s)	60, 204
MaeI	CTAG	1 cut(s)	270
MaeII	ACGT	2 cut(s)	61, 176
MalI	GATC	2 cut(s)	201, 314
MboI	GATC	2 cut(s)	199, 312
MflI	RGATCY	1 cut(s)	312
MhlI	GDGCHC	2 cut(s)	159, 363
MluCI	AATT	1 cut(s)	24
MnlI	CCTC	1 cut(s)	85
MroNI	GCCGGC	1 cut(s)	92
MspI	CCGG	1 cut(s)	93
MvnI	CGCG	1 cut(s)	90
MwoI	GCNNNNNNNGC	2 cut(s)	48, 358
NaeI	GCCGGC	1 cut(s)	94
NdeII	GATC	2 cut(s)	199, 312
NgoMIV	GCCGGC	1 cut(s)	92
NlaIII	CATG	2 cut(s)	40, 100
NlaIV	GGNNCC	1 cut(s)	137
NmeAIII	GCCGAG	1 cut(s)	342
PcsI	WCGNNNNNNNCGW	1 cut(s)	156
PdiI	GCCGGC	1 cut(s)	94
PfeI	GAWTC	2 cut(s)	33, 204
PkrI	GCNGC	3 cut(s)	20, 50, 263
Ple19I	CGATCG	1 cut(s)	202
Psp124BI	GAGCTC	2 cut(s)	159, 363
PspN4I	GGNNCC	1 cut(s)	137
PspPI	GGNCC	2 cut(s)	100, 135
PsuI	RGATCY	1 cut(s)	312
PvuI	CGATCG	1 cut(s)	202
RsaI	GTAC	1 cut(s)	227
RsaNI	GTAC	1 cut(s)	226
SacI	GAGCTC	2 cut(s)	159, 363
SatI	GCNGC	3 cut(s)	19, 49, 262
Sau3AI	GATC	2 cut(s)	199, 312
Sau96I	GGNCC	2 cut(s)	100, 135
SduI	GDGCHC	2 cut(s)	159, 363
SetI	ASST	7 cut(s)	64, 159, 179, 235, 263, 351, 363
SfaNI	GCATC	2 cut(s)	60, 204
Sse9I	AATT	1 cut(s)	24
SsiI	CCGC	4 cut(s)	42, 48, 88, 366
SspMI	CTAG	1 cut(s)	270
SstI	GAGCTC	2 cut(s)	159, 363
TaaI	ACNGT	2 cut(s)	217, 375
TaiI	ACGT	2 cut(s)	64, 179
TaqI	TCGA	2 cut(s)	198, 202
TasI	AATT	1 cut(s)	24
TauI	GCSGC	1 cut(s)	51
TfiI	GAWTC	2 cut(s)	33, 204
TseI	GCWGC	2 cut(s)	18, 261
XmiI	GTMKAC	1 cut(s)	333
XspI	CTAG	1 cut(s)	270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.