Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008093.1

Orthogroup ID

OG0008738

Physical Location & Seq

Genomic Coordinates Reverse (-)

23103 .. 23775

Gene Structure 673 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008093.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

atgggagaattagggcttggcatccaaaacagaagacccggtcccgtccagaaaccgtcccgaaaatcgccggtatgggtcgatcccaatcccgtcaatgacgagcttgtctcggactacggcacgccgtttcccgagccctgtatagatcgcatcgcctacactgtcggaaagtacgaagctttggcttggctgactggagggctgagctgcttcgttgggctgggcttgttggccgtctggaacgacaaggtgtccaagattccgtttgcaccgaaagtgtacccatatgacaatctacaagtggagctcaccggagaaccgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0016020 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

108

Amino Acids

11.86

Weight (kDa)

4.99

Isoelectric Point (pI)

36.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008738)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47570
fragaria_vesca	FvH4_6g27850 FvH4_6g27850
malus_domestica	MD09G1234000.v1.1 MD17G1263200.v1.1
prunus_persica	Prupe.3G111600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0326801 RchiOBHm_Chr2g0109601 RchiOBHm_Chr2g0112371 RchiOBHm_Chr2g0131201
rosa_laevigata	RLG00000019174 RLG00000030055
rosa_multiflora	Rmu_co8496245.1_g000001 Rmu_sc0000332.1_g000053 Rmu_sc0008093.1_g000004 Rmu_sc0025896.1_g000002
rosa_roxburghii	Rroxscaffold_2G00113140
rosa_rugosa	Rorug02G0161100 Rorug02G0295400
rosa_samantha	Rh2AG348400 Rh2CG215500 Rh2CG334300
rosa_wichuraiana	Rw2G028290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	107
AclWI	GGATC	1 cut(s)	77
AcoI	YGGCCR	1 cut(s)	234
AfaI	GTAC	2 cut(s)	176, 284
AhdI	GACNNNNNGTC	1 cut(s)	253
AjuI	GAANNNNNNNTTGG	1 cut(s)	32
AluBI	AGCT	4 cut(s)	106, 182, 210, 310
AluI	AGCT	4 cut(s)	106, 182, 210, 310
Alw21I	GWGCWC	1 cut(s)	312
Alw26I	GTCTC	1 cut(s)	115
AlwI	GGATC	1 cut(s)	77
Ama87I	CYCGRG	1 cut(s)	134
AoxI	GGCC	1 cut(s)	234
ApeKI	GCWGC	1 cut(s)	210
AspS9I	GGNCC	1 cut(s)	41
AsuC2I	CCSGG	1 cut(s)	39
AsuHPI	GGTGA	1 cut(s)	304
AvaI	CYCGRG	1 cut(s)	134
AvaII	GGWCC	1 cut(s)	41
BanII	GRGCYC	2 cut(s)	141, 312
BbsI	GAAGAC	1 cut(s)	40
Bbv12I	GWGCWC	1 cut(s)	312
BbvI	GCAGC	1 cut(s)	197
BceAI	ACGGC	3 cut(s)	112, 136, 221
BcnI	CCSGG	1 cut(s)	39
BcoDI	GTCTC	1 cut(s)	115
BisI	GCNGC	1 cut(s)	211
BlpI	GCTNAGC	1 cut(s)	206
BlsI	GCNGC	1 cut(s)	212
Bme1390I	CCNGG	1 cut(s)	39
Bme18I	GGWCC	1 cut(s)	41
BmeRI	GACNNNNNGTC	1 cut(s)	253
BmeT110I	CYCGRG	1 cut(s)	134
BmgT120I	GGNCC	1 cut(s)	41
BmiI	GGNNCC	1 cut(s)	43
BmrFI	CCNGG	1 cut(s)	39
BmsI	GCATC	2 cut(s)	30, 162
BpiI	GAAGAC	1 cut(s)	40
BplI	GAGNNNNNCTC	2 cut(s)	95, 127
BpmI	CTGGAG	1 cut(s)	219
Bpu1102I	GCTNAGC	1 cut(s)	206
BpuMI	CCSGG	1 cut(s)	39
BsaBI	GATNNNNATC	1 cut(s)	87
BsaWI	WCCGGW	1 cut(s)	314
Bse118I	RCCGGY	1 cut(s)	70
Bse1I	ACTGG	1 cut(s)	202
Bse8I	GATNNNNATC	1 cut(s)	87
BseGI	GGATG	1 cut(s)	21
BseJI	GATNNNNATC	1 cut(s)	87
BseMII	CTCAG	1 cut(s)	197
BseNI	ACTGG	1 cut(s)	202
BseXI	GCAGC	1 cut(s)	197
BseYI	CCCAGC	1 cut(s)	223
BshFI	GGCC	1 cut(s)	236
BsiHKAI	GWGCWC	1 cut(s)	312
BsiHKCI	CYCGRG	1 cut(s)	134
BsiSI	CCGG	3 cut(s)	39, 71, 315
BslFI	GGGAC	2 cut(s)	27, 43
BsmAI	GTCTC	1 cut(s)	115
BsmFI	GGGAC	2 cut(s)	27, 43
BsnI	GGCC	1 cut(s)	236
BsoBI	CYCGRG	1 cut(s)	134
Bsp1286I	GDGCHC	2 cut(s)	141, 312
Bsp143I	GATC	2 cut(s)	82, 148
Bsp1720I	GCTNAGC	1 cut(s)	206
BspANI	GGCC	1 cut(s)	236
BspCNI	CTCAG	1 cut(s)	198
BspLI	GGNNCC	1 cut(s)	43
BspPI	GGATC	1 cut(s)	77
BsrFI	RCCGGY	1 cut(s)	70
BsrI	ACTGG	1 cut(s)	202
BssAI	RCCGGY	1 cut(s)	70
BssMI	GATC	2 cut(s)	82, 148
Bst4CI	ACNGT	3 cut(s)	57, 166, 324
BstC8I	GCNNGC	1 cut(s)	125
BstDEI	CTNAG	1 cut(s)	206
BstF5I	GGATG	1 cut(s)	21
BstKTI	GATC	2 cut(s)	85, 151
BstMAI	GTCTC	1 cut(s)	115
BstMBI	GATC	2 cut(s)	82, 148
BstSCI	CCNGG	1 cut(s)	37
BstV1I	GCAGC	1 cut(s)	197
BstV2I	GAAGAC	1 cut(s)	40
BsuRI	GGCC	1 cut(s)	236
BtgZI	GCGATG	1 cut(s)	139
BtsCI	GGATG	1 cut(s)	21
BtsIMutI	CAGTG	1 cut(s)	162
Cac8I	GCNNGC	1 cut(s)	125
Cfr10I	RCCGGY	1 cut(s)	70
Cfr13I	GGNCC	1 cut(s)	41
Csp6I	GTAC	2 cut(s)	175, 283
CviQI	GTAC	2 cut(s)	175, 283
DdeI	CTNAG	1 cut(s)	206
DpnI	GATC	2 cut(s)	84, 150
DpnII	GATC	2 cut(s)	82, 148
DrdI	GACNNNNNNGTC	1 cut(s)	107
DriI	GACNNNNNGTC	1 cut(s)	253
DseDI	GACNNNNNNGTC	1 cut(s)	107
EaeI	YGGCCR	1 cut(s)	234
Eam1105I	GACNNNNNGTC	1 cut(s)	253
Ecl136II	GAGCTC	1 cut(s)	310
Eco24I	GRGCYC	2 cut(s)	141, 312
Eco47I	GGWCC	1 cut(s)	41
Eco53kI	GAGCTC	1 cut(s)	310
Eco88I	CYCGRG	1 cut(s)	134
EcoICRI	GAGCTC	1 cut(s)	310
EcoT38I	GRGCYC	2 cut(s)	141, 312
FaiI	YATR	4 cut(s)	76, 146, 289, 291
FaqI	GGGAC	2 cut(s)	27, 43
FauNDI	CATATG	1 cut(s)	289
Fnu4HI	GCNGC	1 cut(s)	211
FokI	GGATG	1 cut(s)	8
FriOI	GRGCYC	2 cut(s)	141, 312
Fsp4HI	GCNGC	1 cut(s)	211
GluI	GCNGC	1 cut(s)	211
GsaI	CCCAGC	1 cut(s)	227
GsuI	CTGGAG	1 cut(s)	219
HaeIII	GGCC	1 cut(s)	236
HapII	CCGG	3 cut(s)	39, 71, 315
HindIII	AAGCTT	1 cut(s)	180
HinfI	GANTC	1 cut(s)	262
HpaII	CCGG	3 cut(s)	39, 71, 315
HphI	GGTGA	1 cut(s)	304
Hpy166II	GTNNAC	1 cut(s)	283
Hpy188I	TCNGA	2 cut(s)	115, 170
Hpy188III	TCNNGA	4 cut(s)	49, 60, 134, 241
Hpy8I	GTNNAC	1 cut(s)	283
HpyCH4III	ACNGT	3 cut(s)	57, 166, 324
HpyCH4V	TGCA	1 cut(s)	272
HpyF3I	CTNAG	1 cut(s)	206
Kzo9I	GATC	2 cut(s)	82, 148
LmnI	GCTCC	1 cut(s)	307
LpnPI	CCDG	7 cut(s)	52, 62, 84, 154, 183, 209, 226
Lsp1109I	GCAGC	1 cut(s)	197
LweI	GCATC	2 cut(s)	30, 162
MalI	GATC	2 cut(s)	84, 150
MboI	GATC	2 cut(s)	82, 148
MboII	GAAGA	1 cut(s)	45
MhlI	GDGCHC	2 cut(s)	141, 312
MluCI	AATT	1 cut(s)	8
MmeI	TCCRAC	1 cut(s)	148
MnlI	CCTC	1 cut(s)	194
MspI	CCGG	3 cut(s)	39, 71, 315
MspR9I	CCNGG	1 cut(s)	39
NciI	CCSGG	1 cut(s)	39
NdeI	CATATG	1 cut(s)	289
NdeII	GATC	2 cut(s)	82, 148
NlaIV	GGNNCC	1 cut(s)	43
PcsI	WCGNNNNNNNCGW	1 cut(s)	174
PfeI	GAWTC	1 cut(s)	262
PflFI	GACNNNGTC	1 cut(s)	39
PkrI	GCNGC	1 cut(s)	212
Psp124BI	GAGCTC	1 cut(s)	312
PspFI	CCCAGC	1 cut(s)	223
PspN4I	GGNNCC	1 cut(s)	43
PspPI	GGNCC	1 cut(s)	41
PsyI	GACNNNGTC	1 cut(s)	39
RsaI	GTAC	2 cut(s)	176, 284
RsaNI	GTAC	2 cut(s)	175, 283
SacI	GAGCTC	1 cut(s)	312
SatI	GCNGC	1 cut(s)	211
Sau3AI	GATC	2 cut(s)	82, 148
Sau96I	GGNCC	1 cut(s)	41
ScrFI	CCNGG	1 cut(s)	39
SduI	GDGCHC	2 cut(s)	141, 312
SetI	ASST	5 cut(s)	108, 184, 212, 255, 312
SfaNI	GCATC	2 cut(s)	30, 162
SinI	GGWCC	1 cut(s)	41
Sse9I	AATT	1 cut(s)	8
SstI	GAGCTC	1 cut(s)	312
StyD4I	CCNGG	1 cut(s)	37
TaaI	ACNGT	3 cut(s)	57, 166, 324
TaqI	TCGA	1 cut(s)	81
TasI	AATT	1 cut(s)	8
TfiI	GAWTC	1 cut(s)	262
TscAI	CASTG	1 cut(s)	169
TseI	GCWGC	1 cut(s)	210
TspGWI	ACGGA	1 cut(s)	255
TspRI	CASTG	1 cut(s)	169
Tth111I	GACNNNGTC	1 cut(s)	39
VpaK11BI	GGWCC	1 cut(s)	41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.