Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0008738

Physical Location & Seq

Genomic Coordinates Reverse (-)

32436092 .. 32436469

Gene Structure 378 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1263200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGCTGGGAGATTGAGCAGTGTGGCTTCCAAGATCATGGGCGGAAACGGTGTCGTCTCACGTTCCGTCGCTTCCTCTCTCCGTGTCCGCGCCGGCATGGGCCTTCCGGTCGGCAAGCACATCGTCCCCGACAAGCCCCTTCCCGTAAACGACGAGCTCGTCTGGGACAACGGCACGCCGTTTCCCGAACCATGCACCGATCGAATCGCCGACACCGTCGGAAAGTACGAAGCTTTGGCTTGGCTCTGTGGGGGCTTGAGCTGCTTTGCTGGACTGGGTTTGTTGGCCGTGTGGAACGACAAGGCGTCCAAGATCCCATTTGCCCCAAAAGTGTACCCCTACGACAACCTGCGAGTGGAGCTCGGCGGAGAACCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0016020 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

126

Amino Acids

13.21

Weight (kDa)

7.7

Isoelectric Point (pI)

40.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008738)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47570
fragaria_vesca	FvH4_6g27850 FvH4_6g27850
malus_domestica	MD09G1234000.v1.1 MD17G1263200.v1.1
prunus_persica	Prupe.3G111600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0326801 RchiOBHm_Chr2g0109601 RchiOBHm_Chr2g0112371 RchiOBHm_Chr2g0131201
rosa_laevigata	RLG00000019174 RLG00000030055
rosa_multiflora	Rmu_co8496245.1_g000001 Rmu_sc0000332.1_g000053 Rmu_sc0008093.1_g000004 Rmu_sc0025896.1_g000002
rosa_roxburghii	Rroxscaffold_2G00113140
rosa_rugosa	Rorug02G0161100 Rorug02G0295400
rosa_samantha	Rh2AG348400 Rh2CG215500 Rh2CG334300
rosa_wichuraiana	Rw2G028290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	158
Acc36I	ACCTGC	1 cut(s)	357
AccII	CGCG	1 cut(s)	90
AciI	CCGC	3 cut(s)	42, 88, 366
AclWI	GGATC	1 cut(s)	307
AcoI	YGGCCR	1 cut(s)	285
AcyI	GRCGYC	1 cut(s)	305
AfaI	GTAC	2 cut(s)	227, 335
AfiI	CCNNNNNNNGG	1 cut(s)	355
AhdI	GACNNNNNGTC	1 cut(s)	304
AluBI	AGCT	4 cut(s)	157, 233, 261, 361
AluI	AGCT	4 cut(s)	157, 233, 261, 361
Alw21I	GWGCWC	2 cut(s)	159, 363
Alw26I	GTCTC	1 cut(s)	61
AlwI	GGATC	1 cut(s)	307
AoxI	GGCC	2 cut(s)	100, 285
ApeKI	GCWGC	1 cut(s)	261
AspLEI	GCGC	1 cut(s)	92
AspS9I	GGNCC	1 cut(s)	100
BanII	GRGCYC	2 cut(s)	159, 363
Bbv12I	GWGCWC	2 cut(s)	159, 363
BbvI	GCAGC	1 cut(s)	248
BceAI	ACGGC	3 cut(s)	163, 187, 272
BcgI	CGANNNNNNTGC	2 cut(s)	103, 137
BcoDI	GTCTC	1 cut(s)	61
BfuAI	ACCTGC	1 cut(s)	357
BisI	GCNGC	1 cut(s)	262
BlsI	GCNGC	1 cut(s)	263
BmeRI	GACNNNNNGTC	1 cut(s)	304
BmgT120I	GGNCC	1 cut(s)	100
BmrI	ACTGGG	1 cut(s)	284
BmuI	ACTGGG	1 cut(s)	284
BplI	GAGNNNNNCTC	2 cut(s)	345, 377
BpuEI	CTTGAG	1 cut(s)	277
BsaHI	GRCGYC	1 cut(s)	305
BsaWI	WCCGGW	1 cut(s)	106
Bsc4I	CCNNNNNNNGG	1 cut(s)	355
Bse118I	RCCGGY	1 cut(s)	92
Bse1I	ACTGG	1 cut(s)	279
BseLI	CCNNNNNNNGG	1 cut(s)	355
BseNI	ACTGG	1 cut(s)	279
BseXI	GCAGC	1 cut(s)	248
BseYI	CCCAGC	1 cut(s)	5
Bsh1236I	CGCG	1 cut(s)	90
Bsh1285I	CGRYCG	2 cut(s)	111, 202
BshFI	GGCC	2 cut(s)	102, 287
BsiEI	CGRYCG	2 cut(s)	111, 202
BsiHKAI	GWGCWC	2 cut(s)	159, 363
BsiSI	CCGG	2 cut(s)	93, 107
BslFI	GGGAC	2 cut(s)	110, 179
BslI	CCNNNNNNNGG	1 cut(s)	355
BsmAI	GTCTC	1 cut(s)	61
BsmBI	CGTCTC	1 cut(s)	61
BsmFI	GGGAC	2 cut(s)	110, 179
BsnI	GGCC	2 cut(s)	102, 287
Bsp1286I	GDGCHC	2 cut(s)	159, 363
Bsp143I	GATC	3 cut(s)	33, 199, 312
BspACI	CCGC	3 cut(s)	42, 88, 366
BspANI	GGCC	2 cut(s)	102, 287
BspFNI	CGCG	1 cut(s)	90
BspMI	ACCTGC	1 cut(s)	357
BspPI	GGATC	1 cut(s)	307
BsrFI	RCCGGY	1 cut(s)	92
BsrI	ACTGG	1 cut(s)	279
BssAI	RCCGGY	1 cut(s)	92
BssMI	GATC	3 cut(s)	33, 199, 312
BssNI	GRCGYC	1 cut(s)	305
Bst4CI	ACNGT	3 cut(s)	50, 217, 375
BstACI	GRCGYC	1 cut(s)	305
BstC8I	GCNNGC	3 cut(s)	94, 116, 176
BstFNI	CGCG	1 cut(s)	90
BstHHI	GCGC	1 cut(s)	92
BstKTI	GATC	3 cut(s)	36, 202, 315
BstMAI	GTCTC	1 cut(s)	61
BstMBI	GATC	3 cut(s)	33, 199, 312
BstMCI	CGRYCG	2 cut(s)	111, 202
BstMWI	GCNNNNNNNGC	2 cut(s)	261, 358
BstUI	CGCG	1 cut(s)	90
BstV1I	GCAGC	1 cut(s)	248
BstX2I	RGATCY	1 cut(s)	312
BstXI	CCANNNNNNTGG	1 cut(s)	37
BstYI	RGATCY	1 cut(s)	312
BsuRI	GGCC	2 cut(s)	102, 287
BtsI	GCAGTG	1 cut(s)	25
BtsIMutI	CAGTG	1 cut(s)	25
BveI	ACCTGC	1 cut(s)	357
Cac8I	GCNNGC	3 cut(s)	94, 116, 176
CfoI	GCGC	1 cut(s)	92
Cfr10I	RCCGGY	1 cut(s)	92
Cfr13I	GGNCC	1 cut(s)	100
CseI	GACGC	1 cut(s)	294
Csp6I	GTAC	2 cut(s)	226, 334
CviAII	CATG	3 cut(s)	37, 97, 192
CviQI	GTAC	2 cut(s)	226, 334
DpnI	GATC	3 cut(s)	35, 201, 314
DpnII	GATC	3 cut(s)	33, 199, 312
DrdI	GACNNNNNNGTC	1 cut(s)	158
DriI	GACNNNNNGTC	1 cut(s)	304
DseDI	GACNNNNNNGTC	1 cut(s)	158
EaeI	YGGCCR	1 cut(s)	285
Eam1105I	GACNNNNNGTC	1 cut(s)	304
EciI	GGCGGA	1 cut(s)	57
Ecl136II	GAGCTC	2 cut(s)	157, 361
Eco24I	GRGCYC	2 cut(s)	159, 363
Eco53kI	GAGCTC	2 cut(s)	157, 361
EcoICRI	GAGCTC	2 cut(s)	157, 361
EcoT38I	GRGCYC	2 cut(s)	159, 363
Esp3I	CGTCTC	1 cut(s)	61
FaeI	CATG	3 cut(s)	40, 100, 195
FaiI	YATR	3 cut(s)	38, 98, 193
FaqI	GGGAC	2 cut(s)	110, 179
FatI	CATG	3 cut(s)	36, 96, 191
Fnu4HI	GCNGC	1 cut(s)	262
FriOI	GRGCYC	2 cut(s)	159, 363
Fsp4HI	GCNGC	1 cut(s)	262
GlaI	GCGC	1 cut(s)	91
GluI	GCNGC	1 cut(s)	262
GsaI	CCCAGC	1 cut(s)	9
HaeIII	GGCC	2 cut(s)	102, 287
HapII	CCGG	2 cut(s)	93, 107
HgaI	GACGC	1 cut(s)	294
HhaI	GCGC	1 cut(s)	92
Hin1I	GRCGYC	1 cut(s)	305
Hin1II	CATG	3 cut(s)	40, 100, 195
Hin6I	GCGC	1 cut(s)	90
HinP1I	GCGC	1 cut(s)	90
HindIII	AAGCTT	1 cut(s)	231
HinfI	GANTC	1 cut(s)	204
HpaII	CCGG	2 cut(s)	93, 107
Hpy166II	GTNNAC	2 cut(s)	148, 334
Hpy188I	TCNGA	1 cut(s)	221
Hpy188III	TCNNGA	1 cut(s)	185
Hpy8I	GTNNAC	2 cut(s)	148, 334
Hpy99I	CGWCG	3 cut(s)	71, 155, 221
HpyAV	CCTTC	2 cut(s)	113, 149
HpyCH4III	ACNGT	3 cut(s)	50, 217, 375
HpyCH4IV	ACGT	1 cut(s)	61
HpyCH4V	TGCA	1 cut(s)	195
HpyF10VI	GCNNNNNNNGC	2 cut(s)	261, 358
HpySE526I	ACGT	1 cut(s)	61
Hsp92I	GRCGYC	1 cut(s)	305
Hsp92II	CATG	3 cut(s)	40, 100, 195
HspAI	GCGC	1 cut(s)	90
KroI	GCCGGC	1 cut(s)	92
KroNI	GCCGGC	1 cut(s)	94
Kzo9I	GATC	3 cut(s)	33, 199, 312
LmnI	GCTCC	1 cut(s)	358
LpnPI	CCDG	6 cut(s)	106, 120, 148, 255, 260, 362
Lsp1109I	GCAGC	1 cut(s)	248
MaeII	ACGT	1 cut(s)	61
MalI	GATC	3 cut(s)	35, 201, 314
MboI	GATC	3 cut(s)	33, 199, 312
MflI	RGATCY	1 cut(s)	312
MhlI	GDGCHC	2 cut(s)	159, 363
MmeI	TCCRAC	1 cut(s)	199
MnlI	CCTC	1 cut(s)	85
MroNI	GCCGGC	1 cut(s)	92
MspI	CCGG	2 cut(s)	93, 107
MvnI	CGCG	1 cut(s)	90
MwoI	GCNNNNNNNGC	2 cut(s)	261, 358
NaeI	GCCGGC	1 cut(s)	94
NdeII	GATC	3 cut(s)	33, 199, 312
NgoMIV	GCCGGC	1 cut(s)	92
NlaIII	CATG	3 cut(s)	40, 100, 195
NmeAIII	GCCGAG	1 cut(s)	342
PcsI	WCGNNNNNNNCGW	3 cut(s)	156, 213, 225
PdiI	GCCGGC	1 cut(s)	94
PfeI	GAWTC	1 cut(s)	204
PflFI	GACNNNGTC	1 cut(s)	215
PkrI	GCNGC	1 cut(s)	263
Ple19I	CGATCG	1 cut(s)	202
Psp124BI	GAGCTC	2 cut(s)	159, 363
PspFI	CCCAGC	1 cut(s)	5
PspPI	GGNCC	1 cut(s)	100
PsuI	RGATCY	1 cut(s)	312
PsyI	GACNNNGTC	1 cut(s)	215
PvuI	CGATCG	1 cut(s)	202
RsaI	GTAC	2 cut(s)	227, 335
RsaNI	GTAC	2 cut(s)	226, 334
SacI	GAGCTC	2 cut(s)	159, 363
SatI	GCNGC	1 cut(s)	262
Sau3AI	GATC	3 cut(s)	33, 199, 312
Sau96I	GGNCC	1 cut(s)	100
SduI	GDGCHC	2 cut(s)	159, 363
SetI	ASST	6 cut(s)	64, 159, 235, 263, 351, 363
SmlI	CTYRAG	1 cut(s)	256
SmoI	CTYRAG	1 cut(s)	256
SsiI	CCGC	3 cut(s)	42, 88, 366
SstI	GAGCTC	2 cut(s)	159, 363
TaaI	ACNGT	3 cut(s)	50, 217, 375
TaiI	ACGT	1 cut(s)	64
TaqI	TCGA	1 cut(s)	202
TfiI	GAWTC	1 cut(s)	204
TscAI	CASTG	1 cut(s)	25
TseI	GCWGC	1 cut(s)	261
TspGWI	ACGGA	2 cut(s)	55, 71
TspRI	CASTG	1 cut(s)	25
Tth111I	GACNNNGTC	1 cut(s)	215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.