Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0008738

Physical Location & Seq

Genomic Coordinates Reverse (-)

54185210 .. 54187107

Gene Structure 1898 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030055

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGTACTCAATCTTTGGAGAAAAGCAGTTCCAAGCCTCAGGCTCCGAATCGCCGGCCAATACTGGATTCCTCTTCTTGCTCGGCTCGGCTTTGTCCCGATTGCCCAATTGTCCCCTCCAGCCTAGGATTGGGACTCCCCAACCACTTAACCACAGTGACTCTAATTATCTAGCTGCGAATCCGATCATCTTCCAAGCTCTCCGAACTAGACCTTTTCTAGCGGCCATTGCGGAAAGGGAAGCGAGGCTTCACATTGCAAATGAAGAAACAAGACAAATGGCAGGAAGACTGAGCAACGTGGCGTCTAAAATCATGGGCGGAAACGGTGTCATCCACTATTCCATCACCTCATTTCTTCGGCTTCGTGCCAGCATGAGCCTCCTCGTCGGCAAAGTCATTGTCCCTGAAATACCTCTCCCCGTCAACGACAAGCTCATCTGGGACAGCAGCCCGCTGTTTCCCAAACCCTGTATCGAACGCATAGCCGACACTGTCGGAAAGTACGAAGCTTTAGCTTGGCTAACTGGAGGTCTGAGCTGCTTGGTTGGGCTGGGCTTGTTGGCCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0016020 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

190

Amino Acids

20.5

Weight (kDa)

9.15

Isoelectric Point (pI)

48.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008738)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47570
fragaria_vesca	FvH4_6g27850 FvH4_6g27850
malus_domestica	MD09G1234000.v1.1 MD17G1263200.v1.1
prunus_persica	Prupe.3G111600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0326801 RchiOBHm_Chr2g0109601 RchiOBHm_Chr2g0112371 RchiOBHm_Chr2g0131201
rosa_laevigata	RLG00000019174 RLG00000030055
rosa_multiflora	Rmu_co8496245.1_g000001 Rmu_sc0000332.1_g000053 Rmu_sc0008093.1_g000004 Rmu_sc0025896.1_g000002
rosa_roxburghii	Rroxscaffold_2G00113140
rosa_rugosa	Rorug02G0161100 Rorug02G0295400
rosa_samantha	Rh2AG348400 Rh2CG215500 Rh2CG334300
rosa_wichuraiana	Rw2G028290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	221, 230, 318, 452
AcoI	YGGCCR	3 cut(s)	54, 222, 561
AcyI	GRCGYC	1 cut(s)	302
AfaI	GTAC	2 cut(s)	5, 503
AfiI	CCNNNNNNNGG	1 cut(s)	128
AjuI	GAANNNNNNNTTGG	2 cut(s)	50, 82
AluBI	AGCT	6 cut(s)	173, 197, 433, 509, 515, 537
AluI	AGCT	6 cut(s)	173, 197, 433, 509, 515, 537
AoxI	GGCC	3 cut(s)	54, 222, 561
ApeKI	GCWGC	3 cut(s)	173, 447, 537
ArsI	GACNNNNNNTTYG	2 cut(s)	384, 416
AspA2I	CCTAGG	1 cut(s)	122
AsuHPI	GGTGA	1 cut(s)	337
AvrII	CCTAGG	1 cut(s)	122
AxyI	CCTNAGG	1 cut(s)	37
BalI	TGGCCA	1 cut(s)	563
BbsI	GAAGAC	1 cut(s)	292
BbvI	GCAGC	3 cut(s)	160, 459, 524
BccI	CCATC	1 cut(s)	350
BfaI	CTAG	4 cut(s)	123, 170, 207, 218
BisI	GCNGC	4 cut(s)	174, 222, 448, 538
BlnI	CCTAGG	1 cut(s)	122
BlsI	GCNGC	4 cut(s)	175, 223, 449, 539
BmiI	GGNNCC	1 cut(s)	43
BpiI	GAAGAC	1 cut(s)	292
BpmI	CTGGAG	2 cut(s)	101, 546
BsaHI	GRCGYC	1 cut(s)	302
BsaJI	CCNNGG	1 cut(s)	122
Bsc4I	CCNNNNNNNGG	1 cut(s)	128
Bse118I	RCCGGY	1 cut(s)	52
Bse1I	ACTGG	2 cut(s)	67, 529
Bse21I	CCTNAGG	1 cut(s)	37
Bse3DI	GCAATG	2 cut(s)	225, 252
BseDI	CCNNGG	1 cut(s)	122
BseGI	GGATG	1 cut(s)	330
BseLI	CCNNNNNNNGG	1 cut(s)	128
BseMI	GCAATG	2 cut(s)	225, 252
BseMII	CTCAG	3 cut(s)	51, 281, 524
BseNI	ACTGG	2 cut(s)	67, 529
BseRI	GAGGAG	1 cut(s)	371
BseXI	GCAGC	3 cut(s)	160, 459, 524
BseYI	CCCAGC	1 cut(s)	550
BshFI	GGCC	3 cut(s)	56, 224, 563
BsiSI	CCGG	1 cut(s)	53
BslFI	GGGAC	5 cut(s)	79, 96, 145, 386, 455
BslI	CCNNNNNNNGG	1 cut(s)	128
BsmFI	GGGAC	5 cut(s)	79, 96, 145, 386, 455
BsnI	GGCC	3 cut(s)	56, 224, 563
Bsp143I	GATC	1 cut(s)	183
BspACI	CCGC	4 cut(s)	221, 230, 318, 452
BspANI	GGCC	3 cut(s)	56, 224, 563
BspCNI	CTCAG	3 cut(s)	50, 282, 525
BspLI	GGNNCC	1 cut(s)	43
BsrDI	GCAATG	2 cut(s)	225, 252
BsrFI	RCCGGY	1 cut(s)	52
BsrI	ACTGG	2 cut(s)	67, 529
BssAI	RCCGGY	1 cut(s)	52
BssECI	CCNNGG	1 cut(s)	122
BssMI	GATC	1 cut(s)	183
BssNI	GRCGYC	1 cut(s)	302
BssT1I	CCWWGG	1 cut(s)	122
Bst4CI	ACNGT	3 cut(s)	155, 326, 493
Bst6I	CTCTTC	1 cut(s)	77
BstACI	GRCGYC	1 cut(s)	302
BstC8I	GCNNGC	3 cut(s)	54, 370, 452
BstDEI	CTNAG	3 cut(s)	37, 290, 533
BstF5I	GGATG	1 cut(s)	330
BstKTI	GATC	1 cut(s)	186
BstMBI	GATC	1 cut(s)	183
BstMWI	GCNNNNNNNGC	1 cut(s)	227
BstV1I	GCAGC	3 cut(s)	160, 459, 524
BstV2I	GAAGAC	1 cut(s)	292
Bsu36I	CCTNAGG	1 cut(s)	37
BsuRI	GGCC	3 cut(s)	56, 224, 563
BtsCI	GGATG	1 cut(s)	330
BtsIMutI	CAGTG	2 cut(s)	160, 489
Cac8I	GCNNGC	3 cut(s)	54, 370, 452
Cfr10I	RCCGGY	1 cut(s)	52
CseI	GACGC	1 cut(s)	291
Csp6I	GTAC	2 cut(s)	4, 502
CviAII	CATG	3 cut(s)	313, 373, 565
CviQI	GTAC	2 cut(s)	4, 502
DdeI	CTNAG	3 cut(s)	37, 290, 533
DpnI	GATC	1 cut(s)	185
DpnII	GATC	1 cut(s)	183
EaeI	YGGCCR	3 cut(s)	54, 222, 561
Eam1104I	CTCTTC	1 cut(s)	77
EarI	CTCTTC	1 cut(s)	77
EciI	GGCGGA	1 cut(s)	333
Eco130I	CCWWGG	1 cut(s)	122
Eco81I	CCTNAGG	1 cut(s)	37
EcoT14I	CCWWGG	1 cut(s)	122
ErhI	CCWWGG	1 cut(s)	122
FaeI	CATG	3 cut(s)	316, 376, 568
FaiI	YATR	4 cut(s)	314, 374, 482, 566
FalI	AAGNNNNNCTT	2 cut(s)	231, 263
FaqI	GGGAC	5 cut(s)	79, 96, 145, 386, 455
FatI	CATG	3 cut(s)	312, 372, 564
FauI	CCCGC	1 cut(s)	459
Fnu4HI	GCNGC	4 cut(s)	174, 222, 448, 538
FokI	GGATG	1 cut(s)	317
Fsp4HI	GCNGC	4 cut(s)	174, 222, 448, 538
FspBI	CTAG	4 cut(s)	123, 170, 207, 218
GluI	GCNGC	4 cut(s)	174, 222, 448, 538
GsaI	CCCAGC	1 cut(s)	554
GsuI	CTGGAG	2 cut(s)	101, 546
HaeIII	GGCC	3 cut(s)	56, 224, 563
HapII	CCGG	1 cut(s)	53
HgaI	GACGC	1 cut(s)	291
Hin1I	GRCGYC	1 cut(s)	302
Hin1II	CATG	3 cut(s)	316, 376, 568
HincII	GTYRAC	1 cut(s)	424
HindII	GTYRAC	1 cut(s)	424
HindIII	AAGCTT	1 cut(s)	507
HinfI	GANTC	5 cut(s)	47, 66, 133, 158, 178
HpaII	CCGG	1 cut(s)	53
HphI	GGTGA	1 cut(s)	337
Hpy166II	GTNNAC	1 cut(s)	424
Hpy188I	TCNGA	5 cut(s)	46, 183, 203, 497, 534
Hpy188III	TCNNGA	1 cut(s)	96
Hpy8I	GTNNAC	1 cut(s)	424
Hpy99I	CGWCG	1 cut(s)	389
HpyCH4III	ACNGT	3 cut(s)	155, 326, 493
HpyCH4IV	ACGT	1 cut(s)	297
HpyCH4V	TGCA	1 cut(s)	257
HpyF10VI	GCNNNNNNNGC	1 cut(s)	227
HpyF3I	CTNAG	3 cut(s)	37, 290, 533
HpySE526I	ACGT	1 cut(s)	297
Hsp92I	GRCGYC	1 cut(s)	302
Hsp92II	CATG	3 cut(s)	316, 376, 568
KroI	GCCGGC	1 cut(s)	52
KroNI	GCCGGC	1 cut(s)	54
Kzo9I	GATC	1 cut(s)	183
LmnI	GCTCC	1 cut(s)	47
Lsp1109I	GCAGC	3 cut(s)	160, 459, 524
MaeI	CTAG	4 cut(s)	123, 170, 207, 218
MaeII	ACGT	1 cut(s)	297
MaeIII	GTNAC	1 cut(s)	155
MalI	GATC	1 cut(s)	185
MboI	GATC	1 cut(s)	183
MboII	GAAGA	5 cut(s)	64, 181, 275, 297, 347
MfeI	CAATTG	1 cut(s)	106
MlsI	TGGCCA	1 cut(s)	563
MluCI	AATT	2 cut(s)	106, 163
MluNI	TGGCCA	1 cut(s)	563
MlyI	GAGTC	2 cut(s)	127, 152
MmeI	TCCRAC	1 cut(s)	475
MnlI	CCTC	9 cut(s)	46, 80, 125, 237, 358, 389, 392, 423, 521
Mox20I	TGGCCA	1 cut(s)	563
MroNI	GCCGGC	1 cut(s)	52
MscI	TGGCCA	1 cut(s)	563
MseI	TTAA	1 cut(s)	147
Msp20I	TGGCCA	1 cut(s)	563
MspA1I	CMGCKG	1 cut(s)	454
MspI	CCGG	1 cut(s)	53
MunI	CAATTG	1 cut(s)	106
MwoI	GCNNNNNNNGC	1 cut(s)	227
NaeI	GCCGGC	1 cut(s)	54
NdeII	GATC	1 cut(s)	183
NgoMIV	GCCGGC	1 cut(s)	52
NlaIII	CATG	3 cut(s)	316, 376, 568
NlaIV	GGNNCC	1 cut(s)	43
NmeAIII	GCCGAG	2 cut(s)	60, 65
NmuCI	GTSAC	1 cut(s)	155
PcsI	WCGNNNNNNNCGW	1 cut(s)	501
PdiI	GCCGGC	1 cut(s)	54
PfeI	GAWTC	3 cut(s)	47, 66, 178
PflFI	GACNNNGTC	1 cut(s)	491
PkrI	GCNGC	4 cut(s)	175, 223, 449, 539
PleI	GAGTC	2 cut(s)	127, 152
PpsI	GAGTC	2 cut(s)	127, 152
PspFI	CCCAGC	1 cut(s)	550
PspN4I	GGNNCC	1 cut(s)	43
PsyI	GACNNNGTC	1 cut(s)	491
RsaI	GTAC	2 cut(s)	5, 503
RsaNI	GTAC	2 cut(s)	4, 502
SaqAI	TTAA	1 cut(s)	147
SatI	GCNGC	4 cut(s)	174, 222, 448, 538
Sau3AI	GATC	1 cut(s)	183
SchI	GAGTC	2 cut(s)	127, 152
Sse9I	AATT	2 cut(s)	106, 163
SsiI	CCGC	4 cut(s)	221, 230, 318, 452
SspMI	CTAG	4 cut(s)	123, 170, 207, 218
StyI	CCWWGG	1 cut(s)	122
TaaI	ACNGT	3 cut(s)	155, 326, 493
TaiI	ACGT	1 cut(s)	300
TaqI	TCGA	1 cut(s)	474
TasI	AATT	2 cut(s)	106, 163
TatI	WGTACW	1 cut(s)	3
TauI	GCSGC	1 cut(s)	224
TfiI	GAWTC	3 cut(s)	47, 66, 178
Tru1I	TTAA	1 cut(s)	147
Tru9I	TTAA	1 cut(s)	147
TscAI	CASTG	2 cut(s)	160, 496
TseFI	GTSAC	1 cut(s)	155
TseI	GCWGC	3 cut(s)	173, 447, 537
Tsp45I	GTSAC	1 cut(s)	155
TspDTI	ATGAA	1 cut(s)	276
TspRI	CASTG	2 cut(s)	160, 496
Tth111I	GACNNNGTC	1 cut(s)	491
XcmI	CCANNNNNNNNNTGG	1 cut(s)	125
XmaJI	CCTAGG	1 cut(s)	122
XspI	CTAG	4 cut(s)	123, 170, 207, 218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.