Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008738

Physical Location & Seq

Genomic Coordinates Reverse (-)

24300885 .. 24301518

Gene Structure 634 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ48585

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

ATGCCGTTTCCCAAGCCCTGTATAGATCGCATCGCCTACACCGTCGGAAAGTACGAAGCTTTGGCTTGGCTGACTGGAGGGCTAAGCTGCTTCGTTGGACTGGGCTTGTTGGCCGTCTGGAACGACAAGGCGTCCAAGATTCTGTTTGCACCGAAAGTGTACCCATATGACAATCTACAAGTGGAGCTCGCCGGAGAACCGTGGAGGGTTACTGACTTACTGGGCTTGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0016020 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

77

Amino Acids

8.56

Weight (kDa)

6.08

Isoelectric Point (pI)

28.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008738)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47570
fragaria_vesca	FvH4_6g27850 FvH4_6g27850
malus_domestica	MD09G1234000.v1.1 MD17G1263200.v1.1
prunus_persica	Prupe.3G111600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0326801 RchiOBHm_Chr2g0109601 RchiOBHm_Chr2g0112371 RchiOBHm_Chr2g0131201
rosa_laevigata	RLG00000019174 RLG00000030055
rosa_multiflora	Rmu_co8496245.1_g000001 Rmu_sc0000332.1_g000053 Rmu_sc0008093.1_g000004 Rmu_sc0025896.1_g000002
rosa_roxburghii	Rroxscaffold_2G00113140
rosa_rugosa	Rorug02G0161100 Rorug02G0295400
rosa_samantha	Rh2AG348400 Rh2CG215500 Rh2CG334300
rosa_wichuraiana	Rw2G028290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	111
AcyI	GRCGYC	1 cut(s)	131
AfaI	GTAC	2 cut(s)	53, 161
AhdI	GACNNNNNGTC	1 cut(s)	130
AluBI	AGCT	3 cut(s)	59, 87, 187
AluI	AGCT	3 cut(s)	59, 87, 187
Alw21I	GWGCWC	1 cut(s)	189
AoxI	GGCC	1 cut(s)	111
ApeKI	GCWGC	1 cut(s)	87
BanII	GRGCYC	1 cut(s)	189
Bbv12I	GWGCWC	1 cut(s)	189
BbvI	GCAGC	1 cut(s)	74
BceAI	ACGGC	1 cut(s)	98
BisI	GCNGC	1 cut(s)	88
BlpI	GCTNAGC	1 cut(s)	83
BlsI	GCNGC	1 cut(s)	89
BmeRI	GACNNNNNGTC	1 cut(s)	130
BmrI	ACTGGG	2 cut(s)	110, 230
BmsI	GCATC	1 cut(s)	39
BmuI	ACTGGG	2 cut(s)	110, 230
BpmI	CTGGAG	1 cut(s)	96
Bpu1102I	GCTNAGC	1 cut(s)	83
BsaHI	GRCGYC	1 cut(s)	131
BsaJI	CCNNGG	1 cut(s)	200
Bse1I	ACTGG	3 cut(s)	79, 105, 225
BseDI	CCNNGG	1 cut(s)	200
BseNI	ACTGG	3 cut(s)	79, 105, 225
BseXI	GCAGC	1 cut(s)	74
BshFI	GGCC	1 cut(s)	113
BsiHKAI	GWGCWC	1 cut(s)	189
BsiSI	CCGG	1 cut(s)	192
BsnI	GGCC	1 cut(s)	113
Bsp1286I	GDGCHC	1 cut(s)	189
Bsp143I	GATC	1 cut(s)	25
Bsp1720I	GCTNAGC	1 cut(s)	83
BspANI	GGCC	1 cut(s)	113
BsrI	ACTGG	3 cut(s)	79, 105, 225
BssECI	CCNNGG	1 cut(s)	200
BssMI	GATC	1 cut(s)	25
BssNI	GRCGYC	1 cut(s)	131
Bst4CI	ACNGT	2 cut(s)	43, 201
BstACI	GRCGYC	1 cut(s)	131
BstC8I	GCNNGC	1 cut(s)	189
BstDEI	CTNAG	1 cut(s)	83
BstDSI	CCRYGG	1 cut(s)	200
BstKTI	GATC	1 cut(s)	28
BstMBI	GATC	1 cut(s)	25
BstV1I	GCAGC	1 cut(s)	74
BsuRI	GGCC	1 cut(s)	113
BtgI	CCRYGG	1 cut(s)	200
BtgZI	GCGATG	1 cut(s)	16
Cac8I	GCNNGC	1 cut(s)	189
CseI	GACGC	1 cut(s)	120
Csp6I	GTAC	2 cut(s)	52, 160
CviQI	GTAC	2 cut(s)	52, 160
DdeI	CTNAG	1 cut(s)	83
DpnI	GATC	1 cut(s)	27
DpnII	GATC	1 cut(s)	25
DriI	GACNNNNNGTC	1 cut(s)	130
EaeI	YGGCCR	1 cut(s)	111
Eam1105I	GACNNNNNGTC	1 cut(s)	130
Ecl136II	GAGCTC	1 cut(s)	187
Eco24I	GRGCYC	1 cut(s)	189
Eco53kI	GAGCTC	1 cut(s)	187
EcoICRI	GAGCTC	1 cut(s)	187
EcoT38I	GRGCYC	1 cut(s)	189
FaiI	YATR	3 cut(s)	23, 166, 168
FauNDI	CATATG	1 cut(s)	166
Fnu4HI	GCNGC	1 cut(s)	88
FriOI	GRGCYC	1 cut(s)	189
Fsp4HI	GCNGC	1 cut(s)	88
GluI	GCNGC	1 cut(s)	88
GsuI	CTGGAG	1 cut(s)	96
HaeIII	GGCC	1 cut(s)	113
HapII	CCGG	1 cut(s)	192
HgaI	GACGC	1 cut(s)	120
Hin1I	GRCGYC	1 cut(s)	131
HindIII	AAGCTT	1 cut(s)	57
HinfI	GANTC	1 cut(s)	139
HpaII	CCGG	1 cut(s)	192
Hpy166II	GTNNAC	1 cut(s)	160
Hpy188I	TCNGA	1 cut(s)	47
Hpy188III	TCNNGA	1 cut(s)	118
Hpy8I	GTNNAC	1 cut(s)	160
Hpy99I	CGWCG	1 cut(s)	47
HpyCH4III	ACNGT	2 cut(s)	43, 201
HpyCH4V	TGCA	1 cut(s)	149
HpyF3I	CTNAG	1 cut(s)	83
Hsp92I	GRCGYC	1 cut(s)	131
Kzo9I	GATC	1 cut(s)	25
LmnI	GCTCC	1 cut(s)	184
LpnPI	CCDG	6 cut(s)	31, 60, 86, 103, 205, 206
Lsp1109I	GCAGC	1 cut(s)	74
LweI	GCATC	1 cut(s)	39
MaeIII	GTNAC	1 cut(s)	208
MalI	GATC	1 cut(s)	27
MboI	GATC	1 cut(s)	25
MhlI	GDGCHC	1 cut(s)	189
MmeI	TCCRAC	2 cut(s)	25, 76
MnlI	CCTC	2 cut(s)	71, 198
MspI	CCGG	1 cut(s)	192
NdeI	CATATG	1 cut(s)	166
NdeII	GATC	1 cut(s)	25
PcsI	WCGNNNNNNNCGW	2 cut(s)	39, 51
PfeI	GAWTC	1 cut(s)	139
PkrI	GCNGC	1 cut(s)	89
Psp124BI	GAGCTC	1 cut(s)	189
RsaI	GTAC	2 cut(s)	53, 161
RsaNI	GTAC	2 cut(s)	52, 160
SacI	GAGCTC	1 cut(s)	189
SatI	GCNGC	1 cut(s)	88
Sau3AI	GATC	1 cut(s)	25
SduI	GDGCHC	1 cut(s)	189
SetI	ASST	3 cut(s)	61, 89, 189
SfaNI	GCATC	1 cut(s)	39
SstI	GAGCTC	1 cut(s)	189
TaaI	ACNGT	2 cut(s)	43, 201
TfiI	GAWTC	1 cut(s)	139
TseI	GCWGC	1 cut(s)	87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.