Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0025896.1

Orthogroup ID

OG0008738

Physical Location & Seq

Genomic Coordinates Reverse (-)

3770 .. 4147

Gene Structure 378 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0025896.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

atggcaggaagactgagcagcgcggcgtccaaaatcatgggcggaaacggcgtcgtccaccgttccgtcgcctcctctctccgcctccgcgccggcatgggcctcccggtcggcaaacacatcgtccccgacagacccctccccgtcaacgacgagctcgtctgggacaacggcacgccgttccccgaaccctgtatcgatcgcatcgccgacaccgtgggaaagtacgaagctttggcttggctgaccggaggtctgagctgcttcgttgggctgggcttgttggccgtgtggaacgacaaggcgtccaagattccgtttgcgccgaaagtgtacccatacgacaatctacgagtggagctcggcggagaaccgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0016020 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

125

Amino Acids

13.31

Weight (kDa)

7.79

Isoelectric Point (pI)

38.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008738)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47570
fragaria_vesca	FvH4_6g27850 FvH4_6g27850
malus_domestica	MD09G1234000.v1.1 MD17G1263200.v1.1
prunus_persica	Prupe.3G111600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0326801 RchiOBHm_Chr2g0109601 RchiOBHm_Chr2g0112371 RchiOBHm_Chr2g0131201
rosa_laevigata	RLG00000019174 RLG00000030055
rosa_multiflora	Rmu_co8496245.1_g000001 Rmu_sc0000332.1_g000053 Rmu_sc0008093.1_g000004 Rmu_sc0025896.1_g000002
rosa_roxburghii	Rroxscaffold_2G00113140
rosa_rugosa	Rorug02G0161100 Rorug02G0295400
rosa_samantha	Rh2AG348400 Rh2CG215500 Rh2CG334300
rosa_wichuraiana	Rw2G028290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	158
AccII	CGCG	2 cut(s)	23, 90
AciI	CCGC	5 cut(s)	23, 42, 82, 88, 366
AcoI	YGGCCR	1 cut(s)	285
AcyI	GRCGYC	3 cut(s)	26, 51, 305
AfaI	GTAC	2 cut(s)	227, 335
AhdI	GACNNNNNGTC	2 cut(s)	252, 304
AluBI	AGCT	4 cut(s)	157, 233, 261, 361
AluI	AGCT	4 cut(s)	157, 233, 261, 361
Alw21I	GWGCWC	2 cut(s)	159, 363
AoxI	GGCC	2 cut(s)	100, 285
ApeKI	GCWGC	2 cut(s)	18, 261
ArsI	GACNNNNNNTTYG	2 cut(s)	108, 140
AspLEI	GCGC	3 cut(s)	23, 92, 325
AspS9I	GGNCC	1 cut(s)	100
AsuC2I	CCSGG	1 cut(s)	107
BanII	GRGCYC	2 cut(s)	159, 363
BbsI	GAAGAC	1 cut(s)	16
Bbv12I	GWGCWC	2 cut(s)	159, 363
BbvI	GCAGC	2 cut(s)	30, 248
BceAI	ACGGC	4 cut(s)	64, 163, 187, 272
BcgI	CGANNNNNNTGC	2 cut(s)	103, 137
BcnI	CCSGG	1 cut(s)	107
BisI	GCNGC	3 cut(s)	19, 24, 262
BlsI	GCNGC	3 cut(s)	20, 25, 263
Bme1390I	CCNGG	1 cut(s)	107
BmeRI	GACNNNNNGTC	2 cut(s)	252, 304
BmgT120I	GGNCC	1 cut(s)	100
BmrFI	CCNGG	1 cut(s)	107
BmsI	GCATC	1 cut(s)	213
BpiI	GAAGAC	1 cut(s)	16
BplI	GAGNNNNNCTC	2 cut(s)	345, 377
BpuMI	CCSGG	1 cut(s)	107
Bsa29I	ATCGAT	1 cut(s)	198
BsaHI	GRCGYC	3 cut(s)	26, 51, 305
BsaJI	CCNNGG	1 cut(s)	216
BsaWI	WCCGGW	1 cut(s)	248
Bse118I	RCCGGY	1 cut(s)	92
BseCI	ATCGAT	1 cut(s)	198
BseDI	CCNNGG	1 cut(s)	216
BseMII	CTCAG	2 cut(s)	5, 248
BseRI	GAGGAG	1 cut(s)	64
BseXI	GCAGC	2 cut(s)	30, 248
BseYI	CCCAGC	1 cut(s)	274
Bsh1236I	CGCG	2 cut(s)	23, 90
Bsh1285I	CGRYCG	2 cut(s)	111, 202
BshFI	GGCC	2 cut(s)	102, 287
BshVI	ATCGAT	1 cut(s)	198
BsiEI	CGRYCG	2 cut(s)	111, 202
BsiHKAI	GWGCWC	2 cut(s)	159, 363
BsiSI	CCGG	3 cut(s)	93, 107, 249
BslFI	GGGAC	2 cut(s)	110, 179
BsmFI	GGGAC	2 cut(s)	110, 179
BsnI	GGCC	2 cut(s)	102, 287
Bsp1286I	GDGCHC	2 cut(s)	159, 363
Bsp143I	GATC	1 cut(s)	199
BspACI	CCGC	5 cut(s)	23, 42, 82, 88, 366
BspANI	GGCC	2 cut(s)	102, 287
BspCNI	CTCAG	2 cut(s)	6, 249
BspDI	ATCGAT	1 cut(s)	198
BspFNI	CGCG	2 cut(s)	23, 90
BsrFI	RCCGGY	1 cut(s)	92
BssAI	RCCGGY	1 cut(s)	92
BssECI	CCNNGG	1 cut(s)	216
BssMI	GATC	1 cut(s)	199
BssNI	GRCGYC	3 cut(s)	26, 51, 305
Bst4CI	ACNGT	3 cut(s)	62, 217, 375
BstACI	GRCGYC	3 cut(s)	26, 51, 305
BstC8I	GCNNGC	2 cut(s)	94, 176
BstDEI	CTNAG	2 cut(s)	14, 257
BstDSI	CCRYGG	1 cut(s)	216
BstFNI	CGCG	2 cut(s)	23, 90
BstHHI	GCGC	3 cut(s)	23, 92, 325
BstKTI	GATC	1 cut(s)	202
BstMBI	GATC	1 cut(s)	199
BstMCI	CGRYCG	2 cut(s)	111, 202
BstMWI	GCNNNNNNNGC	1 cut(s)	48
BstSCI	CCNGG	1 cut(s)	105
BstUI	CGCG	2 cut(s)	23, 90
BstV1I	GCAGC	2 cut(s)	30, 248
BstV2I	GAAGAC	1 cut(s)	16
BstXI	CCANNNNNNTGG	1 cut(s)	37
Bsu15I	ATCGAT	1 cut(s)	198
BsuRI	GGCC	2 cut(s)	102, 287
BsuTUI	ATCGAT	1 cut(s)	198
BtgI	CCRYGG	1 cut(s)	216
BtgZI	GCGATG	1 cut(s)	190
Cac8I	GCNNGC	2 cut(s)	94, 176
CfoI	GCGC	3 cut(s)	23, 92, 325
Cfr10I	RCCGGY	1 cut(s)	92
Cfr13I	GGNCC	1 cut(s)	100
ClaI	ATCGAT	1 cut(s)	198
CseI	GACGC	3 cut(s)	15, 40, 294
Csp6I	GTAC	2 cut(s)	226, 334
CviAII	CATG	2 cut(s)	37, 97
CviQI	GTAC	2 cut(s)	226, 334
DdeI	CTNAG	2 cut(s)	14, 257
DpnI	GATC	1 cut(s)	201
DpnII	GATC	1 cut(s)	199
DrdI	GACNNNNNNGTC	1 cut(s)	158
DriI	GACNNNNNGTC	2 cut(s)	252, 304
DseDI	GACNNNNNNGTC	1 cut(s)	158
EaeI	YGGCCR	1 cut(s)	285
Eam1105I	GACNNNNNGTC	2 cut(s)	252, 304
EciI	GGCGGA	2 cut(s)	57, 71
Ecl136II	GAGCTC	2 cut(s)	157, 361
Eco24I	GRGCYC	2 cut(s)	159, 363
Eco53kI	GAGCTC	2 cut(s)	157, 361
EcoICRI	GAGCTC	2 cut(s)	157, 361
EcoT38I	GRGCYC	2 cut(s)	159, 363
FaeI	CATG	2 cut(s)	40, 100
FaiI	YATR	3 cut(s)	38, 98, 340
FaqI	GGGAC	2 cut(s)	110, 179
FatI	CATG	2 cut(s)	36, 96
Fnu4HI	GCNGC	3 cut(s)	19, 24, 262
FriOI	GRGCYC	2 cut(s)	159, 363
Fsp4HI	GCNGC	3 cut(s)	19, 24, 262
GlaI	GCGC	3 cut(s)	22, 91, 324
GluI	GCNGC	3 cut(s)	19, 24, 262
GsaI	CCCAGC	1 cut(s)	278
HaeIII	GGCC	2 cut(s)	102, 287
HapII	CCGG	3 cut(s)	93, 107, 249
HgaI	GACGC	3 cut(s)	15, 40, 294
HhaI	GCGC	3 cut(s)	23, 92, 325
Hin1I	GRCGYC	3 cut(s)	26, 51, 305
Hin1II	CATG	2 cut(s)	40, 100
Hin6I	GCGC	3 cut(s)	21, 90, 323
HinP1I	GCGC	3 cut(s)	21, 90, 323
HincII	GTYRAC	1 cut(s)	148
HindII	GTYRAC	1 cut(s)	148
HindIII	AAGCTT	1 cut(s)	231
HinfI	GANTC	1 cut(s)	313
HpaII	CCGG	3 cut(s)	93, 107, 249
Hpy166II	GTNNAC	3 cut(s)	58, 148, 334
Hpy188I	TCNGA	1 cut(s)	258
Hpy8I	GTNNAC	3 cut(s)	58, 148, 334
Hpy99I	CGWCG	3 cut(s)	56, 71, 155
HpyCH4III	ACNGT	3 cut(s)	62, 217, 375
HpyF10VI	GCNNNNNNNGC	1 cut(s)	48
HpyF3I	CTNAG	2 cut(s)	14, 257
Hsp92I	GRCGYC	3 cut(s)	26, 51, 305
Hsp92II	CATG	2 cut(s)	40, 100
HspAI	GCGC	3 cut(s)	21, 90, 323
KroI	GCCGGC	1 cut(s)	92
KroNI	GCCGGC	1 cut(s)	94
Kzo9I	GATC	1 cut(s)	199
LmnI	GCTCC	1 cut(s)	358
LpnPI	CCDG	6 cut(s)	106, 120, 148, 205, 260, 262
Lsp1109I	GCAGC	2 cut(s)	30, 248
LweI	GCATC	1 cut(s)	213
MalI	GATC	1 cut(s)	201
MboI	GATC	1 cut(s)	199
MboII	GAAGA	1 cut(s)	21
MhlI	GDGCHC	2 cut(s)	159, 363
MnlI	CCTC	6 cut(s)	82, 85, 95, 113, 149, 245
MroNI	GCCGGC	1 cut(s)	92
MspI	CCGG	3 cut(s)	93, 107, 249
MspR9I	CCNGG	1 cut(s)	107
MvnI	CGCG	2 cut(s)	23, 90
MwoI	GCNNNNNNNGC	1 cut(s)	48
NaeI	GCCGGC	1 cut(s)	94
NciI	CCSGG	1 cut(s)	107
NdeII	GATC	1 cut(s)	199
NgoMIV	GCCGGC	1 cut(s)	92
NlaIII	CATG	2 cut(s)	40, 100
NmeAIII	GCCGAG	1 cut(s)	342
PcsI	WCGNNNNNNNCGW	2 cut(s)	156, 213
PdiI	GCCGGC	1 cut(s)	94
PfeI	GAWTC	1 cut(s)	313
PkrI	GCNGC	3 cut(s)	20, 25, 263
Ple19I	CGATCG	1 cut(s)	202
Psp124BI	GAGCTC	2 cut(s)	159, 363
PspFI	CCCAGC	1 cut(s)	274
PspPI	GGNCC	1 cut(s)	100
PvuI	CGATCG	1 cut(s)	202
RsaI	GTAC	2 cut(s)	227, 335
RsaNI	GTAC	2 cut(s)	226, 334
SacI	GAGCTC	2 cut(s)	159, 363
SatI	GCNGC	3 cut(s)	19, 24, 262
Sau3AI	GATC	1 cut(s)	199
Sau96I	GGNCC	1 cut(s)	100
ScrFI	CCNGG	1 cut(s)	107
SduI	GDGCHC	2 cut(s)	159, 363
SetI	ASST	5 cut(s)	159, 235, 256, 263, 363
SfaNI	GCATC	1 cut(s)	213
SsiI	CCGC	5 cut(s)	23, 42, 82, 88, 366
SstI	GAGCTC	2 cut(s)	159, 363
StyD4I	CCNGG	1 cut(s)	105
TaaI	ACNGT	3 cut(s)	62, 217, 375
TaqI	TCGA	1 cut(s)	198
TauI	GCSGC	1 cut(s)	26
TfiI	GAWTC	1 cut(s)	313
TseI	GCWGC	2 cut(s)	18, 261
TspGWI	ACGGA	2 cut(s)	55, 306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.