Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0008738

Physical Location & Seq

Genomic Coordinates Forward (+)

51174333 .. 51174954

Gene Structure 622 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG348400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGGGCGGAAACGGCGTCGTCCACCGTTCCGTCGCCTCCTCTCTCCGCCTCCGCGCCGGCATGGGCCTCCCGGTCGGCAAACACATCGTCCCCGACAGACCCCTCCCCGTCAACGACGAGCTCGTCTGGGACAACGGCACGCCGTTCCCTGAACCCTGTATCGATCGCATCGCCGACACCGTGGGAAAGTACGAAGCTTTGGCTTGGCTGACCGGAGGTCTGAGCTGCTTCGTTGGGCTGGGCTTGTTGGCCGTGTGGAACGACAAGGCGTCCAAGATTCCGTTTGCGCCGAAAGTGTACCCATACGACAATCTACGAGTTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0016020 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

108

Amino Acids

11.67

Weight (kDa)

7.8

Isoelectric Point (pI)

38.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008738)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47570
fragaria_vesca	FvH4_6g27850 FvH4_6g27850
malus_domestica	MD09G1234000.v1.1 MD17G1263200.v1.1
prunus_persica	Prupe.3G111600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0326801 RchiOBHm_Chr2g0109601 RchiOBHm_Chr2g0112371 RchiOBHm_Chr2g0131201
rosa_laevigata	RLG00000019174 RLG00000030055
rosa_multiflora	Rmu_co8496245.1_g000001 Rmu_sc0000332.1_g000053 Rmu_sc0008093.1_g000004 Rmu_sc0025896.1_g000002
rosa_roxburghii	Rroxscaffold_2G00113140
rosa_rugosa	Rorug02G0161100 Rorug02G0295400
rosa_samantha	Rh2AG348400 Rh2CG215500 Rh2CG334300
rosa_wichuraiana	Rw2G028290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	122
AccII	CGCG	1 cut(s)	54
AciI	CCGC	3 cut(s)	6, 46, 52
AcoI	YGGCCR	1 cut(s)	249
AcyI	GRCGYC	2 cut(s)	15, 269
AfaI	GTAC	2 cut(s)	191, 299
AhdI	GACNNNNNGTC	2 cut(s)	216, 268
AluBI	AGCT	3 cut(s)	121, 197, 225
AluI	AGCT	3 cut(s)	121, 197, 225
Alw21I	GWGCWC	1 cut(s)	123
AoxI	GGCC	2 cut(s)	64, 249
ApeKI	GCWGC	1 cut(s)	225
ArsI	GACNNNNNNTTYG	2 cut(s)	72, 104
AspLEI	GCGC	2 cut(s)	56, 289
AspS9I	GGNCC	1 cut(s)	64
AsuC2I	CCSGG	1 cut(s)	71
BanII	GRGCYC	1 cut(s)	123
Bbv12I	GWGCWC	1 cut(s)	123
BbvI	GCAGC	1 cut(s)	212
BceAI	ACGGC	4 cut(s)	28, 127, 151, 236
BcgI	CGANNNNNNTGC	2 cut(s)	67, 101
BcnI	CCSGG	1 cut(s)	71
BisI	GCNGC	1 cut(s)	226
BlsI	GCNGC	1 cut(s)	227
Bme1390I	CCNGG	1 cut(s)	71
BmeRI	GACNNNNNGTC	2 cut(s)	216, 268
BmgT120I	GGNCC	1 cut(s)	64
BmrFI	CCNGG	1 cut(s)	71
BmsI	GCATC	1 cut(s)	177
BpuMI	CCSGG	1 cut(s)	71
Bsa29I	ATCGAT	1 cut(s)	162
BsaHI	GRCGYC	2 cut(s)	15, 269
BsaJI	CCNNGG	1 cut(s)	180
BsaWI	WCCGGW	1 cut(s)	212
Bse118I	RCCGGY	1 cut(s)	56
BseCI	ATCGAT	1 cut(s)	162
BseDI	CCNNGG	1 cut(s)	180
BseMII	CTCAG	1 cut(s)	212
BseRI	GAGGAG	1 cut(s)	28
BseXI	GCAGC	1 cut(s)	212
BseYI	CCCAGC	1 cut(s)	238
Bsh1236I	CGCG	1 cut(s)	54
Bsh1285I	CGRYCG	2 cut(s)	75, 166
BshFI	GGCC	2 cut(s)	66, 251
BshVI	ATCGAT	1 cut(s)	162
BsiEI	CGRYCG	2 cut(s)	75, 166
BsiHKAI	GWGCWC	1 cut(s)	123
BsiSI	CCGG	3 cut(s)	57, 71, 213
BslFI	GGGAC	2 cut(s)	74, 143
BsmFI	GGGAC	2 cut(s)	74, 143
BsnI	GGCC	2 cut(s)	66, 251
Bsp1286I	GDGCHC	1 cut(s)	123
Bsp143I	GATC	1 cut(s)	163
BspACI	CCGC	3 cut(s)	6, 46, 52
BspANI	GGCC	2 cut(s)	66, 251
BspCNI	CTCAG	1 cut(s)	213
BspDI	ATCGAT	1 cut(s)	162
BspFNI	CGCG	1 cut(s)	54
BsrFI	RCCGGY	1 cut(s)	56
BssAI	RCCGGY	1 cut(s)	56
BssECI	CCNNGG	1 cut(s)	180
BssMI	GATC	1 cut(s)	163
BssNI	GRCGYC	2 cut(s)	15, 269
Bst4CI	ACNGT	2 cut(s)	26, 181
BstACI	GRCGYC	2 cut(s)	15, 269
BstC8I	GCNNGC	2 cut(s)	58, 140
BstDEI	CTNAG	1 cut(s)	221
BstDSI	CCRYGG	1 cut(s)	180
BstFNI	CGCG	1 cut(s)	54
BstHHI	GCGC	2 cut(s)	56, 289
BstKTI	GATC	1 cut(s)	166
BstMBI	GATC	1 cut(s)	163
BstMCI	CGRYCG	2 cut(s)	75, 166
BstMWI	GCNNNNNNNGC	1 cut(s)	12
BstSCI	CCNGG	1 cut(s)	69
BstUI	CGCG	1 cut(s)	54
BstV1I	GCAGC	1 cut(s)	212
Bsu15I	ATCGAT	1 cut(s)	162
BsuRI	GGCC	2 cut(s)	66, 251
BsuTUI	ATCGAT	1 cut(s)	162
BtgI	CCRYGG	1 cut(s)	180
BtgZI	GCGATG	1 cut(s)	154
Cac8I	GCNNGC	2 cut(s)	58, 140
CfoI	GCGC	2 cut(s)	56, 289
Cfr10I	RCCGGY	1 cut(s)	56
Cfr13I	GGNCC	1 cut(s)	64
ClaI	ATCGAT	1 cut(s)	162
CseI	GACGC	2 cut(s)	4, 258
Csp6I	GTAC	2 cut(s)	190, 298
CviAII	CATG	1 cut(s)	61
CviJI	RGCY	9 cut(s)	66, 121, 197, 203, 208, 225, 238, 243, 251
CviKI_1	RGCY	9 cut(s)	66, 121, 197, 203, 208, 225, 238, 243, 251
CviQI	GTAC	2 cut(s)	190, 298
DdeI	CTNAG	1 cut(s)	221
DpnI	GATC	1 cut(s)	165
DpnII	GATC	1 cut(s)	163
DrdI	GACNNNNNNGTC	1 cut(s)	122
DriI	GACNNNNNGTC	2 cut(s)	216, 268
DseDI	GACNNNNNNGTC	1 cut(s)	122
EaeI	YGGCCR	1 cut(s)	249
Eam1105I	GACNNNNNGTC	2 cut(s)	216, 268
EciI	GGCGGA	2 cut(s)	21, 35
Ecl136II	GAGCTC	1 cut(s)	121
Eco24I	GRGCYC	1 cut(s)	123
Eco53kI	GAGCTC	1 cut(s)	121
EcoICRI	GAGCTC	1 cut(s)	121
EcoT38I	GRGCYC	1 cut(s)	123
FaeI	CATG	1 cut(s)	64
FaiI	YATR	2 cut(s)	62, 304
FaqI	GGGAC	2 cut(s)	74, 143
FatI	CATG	1 cut(s)	60
Fnu4HI	GCNGC	1 cut(s)	226
FriOI	GRGCYC	1 cut(s)	123
Fsp4HI	GCNGC	1 cut(s)	226
GlaI	GCGC	2 cut(s)	55, 288
GluI	GCNGC	1 cut(s)	226
GsaI	CCCAGC	1 cut(s)	242
HaeIII	GGCC	2 cut(s)	66, 251
HapII	CCGG	3 cut(s)	57, 71, 213
HgaI	GACGC	2 cut(s)	4, 258
HhaI	GCGC	2 cut(s)	56, 289
Hin1I	GRCGYC	2 cut(s)	15, 269
Hin1II	CATG	1 cut(s)	64
Hin6I	GCGC	2 cut(s)	54, 287
HinP1I	GCGC	2 cut(s)	54, 287
HincII	GTYRAC	1 cut(s)	112
HindII	GTYRAC	1 cut(s)	112
HindIII	AAGCTT	1 cut(s)	195
HinfI	GANTC	1 cut(s)	277
HpaII	CCGG	3 cut(s)	57, 71, 213
Hpy166II	GTNNAC	3 cut(s)	22, 112, 298
Hpy188I	TCNGA	1 cut(s)	222
Hpy8I	GTNNAC	3 cut(s)	22, 112, 298
Hpy99I	CGWCG	3 cut(s)	20, 35, 119
HpyCH4III	ACNGT	2 cut(s)	26, 181
HpyF10VI	GCNNNNNNNGC	1 cut(s)	12
HpyF3I	CTNAG	1 cut(s)	221
Hsp92I	GRCGYC	2 cut(s)	15, 269
Hsp92II	CATG	1 cut(s)	64
HspAI	GCGC	2 cut(s)	54, 287
KroI	GCCGGC	1 cut(s)	56
KroNI	GCCGGC	1 cut(s)	58
Kzo9I	GATC	1 cut(s)	163
LpnPI	CCDG	7 cut(s)	70, 84, 112, 162, 169, 224, 226
Lsp1109I	GCAGC	1 cut(s)	212
LweI	GCATC	1 cut(s)	177
MalI	GATC	1 cut(s)	165
MboI	GATC	1 cut(s)	163
MhlI	GDGCHC	1 cut(s)	123
MnlI	CCTC	6 cut(s)	46, 49, 59, 77, 113, 209
MroNI	GCCGGC	1 cut(s)	56
MspI	CCGG	3 cut(s)	57, 71, 213
MspR9I	CCNGG	1 cut(s)	71
MvnI	CGCG	1 cut(s)	54
MwoI	GCNNNNNNNGC	1 cut(s)	12
NaeI	GCCGGC	1 cut(s)	58
NciI	CCSGG	1 cut(s)	71
NdeII	GATC	1 cut(s)	163
NgoMIV	GCCGGC	1 cut(s)	56
NlaIII	CATG	1 cut(s)	64
PcsI	WCGNNNNNNNCGW	2 cut(s)	120, 177
PdiI	GCCGGC	1 cut(s)	58
PfeI	GAWTC	1 cut(s)	277
PkrI	GCNGC	1 cut(s)	227
Ple19I	CGATCG	1 cut(s)	166
Psp124BI	GAGCTC	1 cut(s)	123
PspFI	CCCAGC	1 cut(s)	238
PspPI	GGNCC	1 cut(s)	64
PvuI	CGATCG	1 cut(s)	166
RsaI	GTAC	2 cut(s)	191, 299
RsaNI	GTAC	2 cut(s)	190, 298
SacI	GAGCTC	1 cut(s)	123
SatI	GCNGC	1 cut(s)	226
Sau3AI	GATC	1 cut(s)	163
Sau96I	GGNCC	1 cut(s)	64
ScrFI	CCNGG	1 cut(s)	71
SduI	GDGCHC	1 cut(s)	123
SetI	ASST	4 cut(s)	123, 199, 220, 227
SfaNI	GCATC	1 cut(s)	177
SsiI	CCGC	3 cut(s)	6, 46, 52
SstI	GAGCTC	1 cut(s)	123
StyD4I	CCNGG	1 cut(s)	69
TaaI	ACNGT	2 cut(s)	26, 181
TaqI	TCGA	1 cut(s)	162
TfiI	GAWTC	1 cut(s)	277
TseI	GCWGC	1 cut(s)	225
TspGWI	ACGGA	2 cut(s)	19, 270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.