Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0008875

Physical Location & Seq

Genomic Coordinates Reverse (-)

23343776 .. 23345242

Gene Structure 1467 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g30241.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1467 bp

ATGGCTAGCAAGTCCATATCAGAACTTGAAGACAGTAGAGCAATCTTCAGTAGCTTATTGGGTCCTAGGACTGCAGACCTGATCTCCACTGAATCACAGAGCCTGATTGCTGTGTCTGCACAAGCCATCACCATCATATTTAGCAAGAGTGACTATTGCAATTATTTCCCATCCCTTGAATATACTGGTGCAGTCAGCAAGTTGGCTTGCATCTTAGAAAATTGTGACGACTCTGTGATCCAAACAGATATTTCAGTTGTTCTTGCAAAGCTTGCAGAATTTGGAACCCAAGAAACAGTCGATAAGGTGCTTCAGAGCATTCAATTTCATCAGTTGGCAGAGTTGCTCTCTCCAAATAATGACCAATGGCATGATAGCATGTTTTCAATACTGATCTCATTGATGAAAGCTGGGAAATCAAAAGCTGTGGAGAGAATGCTTGCTTTTGAGATTGATAAGGCTCTTCTTAGACTCCAACAGAATGGATCCGAAGTAGCTCAACACCATGCAATAGTTGCATTGAAGACATTTTATGAGTTGGGGGGCTCCCATCTGGTTGGAACTCTTGAACCAAAAAATATAAACCTTTTGCCATGGCAAGCTAGGCATTGTTTGGAGAGATTTGTTTTGTCGGATCAAAGTGTTCCTCTTTTACCACAGCTGCAAACTTTTGAAGATCTTATTTATAAGGTACTACACAATGATAGCAAGCTGGTATTGGAAGCAATGCAAGATCTCATACCAATCATTGAGAATGCAGGAGAACCAAGCATCAGAGACATGATTATAGAAAGTCCCCTCATCAAACAACTTTCTGAACTCTTGCAACGTGGAAGCTTTGAAGATAACTCAATAAAATCTCAAACTGCTTTTCTATTGATGAAGCTAGCTTCCTCTGGTGGTGAATCCTGCATTCAAAAGTTTCTCGAGTACGATATTATACCTGATCTAGTTAAGATGATGCAGTGCAGCAGTATAGAGTTGCAGGATGCAGCCTATACAGCACTACACCAAATGTGTTTCGGAAGCAGCGGAATTCTCGTTTTGAACCAAATCCTCCAGATGGGTCTCATAGAGAGGATGGCTCAATCACTGGAAAGCAAATCAAGGAAGACCAGGGAAGTGAACGTGCACTGTTTTTTAGATATTGTGGAGCTCGGAAACAAAGCCTGCATCGAGAGGATGATTCCACTGCAAGTGGTGGAGAAGCTTGTGAAAATAGAAAAGGCTAGTGGGGGAACTAGTGAAACACTGCTTGGATTTTTAAAGGGAATTGATAAGTGTAAGCATCTATCTGTGGCAGAGCGTAGAGTGATGAAACAACAAGTGATTAGGAAGATAAGGGCTTCCCTTAAAGGCCATAAATTTGAGTTTCAAATTTTGGGAGCTGTTGATGCTTGTGTATCTGAGGGATCAAAAGCAGGTAGTAGTAGTGGTAGCAGTAGAGGTAAACACAAAAGGGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

489

Amino Acids

54.0

Weight (kDa)

6.21

Isoelectric Point (pI)

49.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008875)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g30240 FvH4_6g30241
prunus_persica	Prupe.3G081300_v2.0.a1 Prupe.3G081300_v2.0.a1 Prupe.3G081300_v2.0.a1 Prupe.3G081300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0136481
rosa_laevigata	RLG00000019535
rosa_multiflora	Rmu_co8277351.1_g000001 Rmu_co8287839.1_g000001 Rmu_ssc0000040.1_g000001
rosa_roxburghii	Rroxscaffold_2G00108250
rosa_rugosa	Rorug02G0331000 Rorug02G0331100 Rorug02G0331200
rosa_samantha	Rh2AG381900 Rh2AG382000 Rh2BG388600 Rh2CG368300 Rh2DG405100 Rh2DG405200 Rh2DG405300
rosa_wichuraiana	Rw2G031220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	687
Acc36I	ACCTGC	1 cut(s)	1412
AciI	CCGC	1 cut(s)	1032
AclWI	GGATC	5 cut(s)	232, 480, 493, 642, 1420
AcsI	RAATTY	4 cut(s)	278, 1035, 1364, 1377
AcuI	CTGAAG	2 cut(s)	31, 296
AfaI	GTAC	2 cut(s)	693, 932
AfiI	CCNNNNNNNGG	1 cut(s)	1063
AhlI	ACTAGT	1 cut(s)	1241
AjnI	CCWGG	1 cut(s)	1115
AjuI	GAANNNNNNNTTGG	2 cut(s)	1239, 1271
Alw21I	GWGCWC	2 cut(s)	1134, 1158
Alw26I	GTCTC	2 cut(s)	771, 1073
Alw44I	GTGCAC	1 cut(s)	1130
AlwI	GGATC	5 cut(s)	232, 480, 493, 642, 1420
AlwNI	CAGNNNCTG	1 cut(s)	103
Ama87I	CYCGRG	1 cut(s)	926
AoxI	GGCC	1 cut(s)	1357
ApaLI	GTGCAC	1 cut(s)	1130
ApeKI	GCWGC	4 cut(s)	661, 969, 992, 1029
ApoI	RAATTY	4 cut(s)	278, 1035, 1364, 1377
AspA2I	CCTAGG	1 cut(s)	65
AspS9I	GGNCC	1 cut(s)	62
AsuHPI	GGTGA	2 cut(s)	121, 914
AsuNHI	GCTAGC	2 cut(s)	5, 886
AvaI	CYCGRG	1 cut(s)	926
AvaII	GGWCC	1 cut(s)	62
AvrII	CCTAGG	1 cut(s)	65
BaeGI	GKGCMC	1 cut(s)	1134
BamHI	GGATCC	1 cut(s)	485
BanII	GRGCYC	2 cut(s)	548, 1158
BbsI	GAAGAC	3 cut(s)	36, 530, 1118
Bbv12I	GWGCWC	2 cut(s)	1134, 1158
BbvI	GCAGC	4 cut(s)	648, 981, 1004, 1041
BccI	CCATC	6 cut(s)	134, 140, 178, 558, 1057, 1075
BciT130I	CCWGG	1 cut(s)	1117
BcoDI	GTCTC	2 cut(s)	771, 1073
BcuI	ACTAGT	1 cut(s)	1241
BfaI	CTAG	7 cut(s)	6, 66, 603, 887, 950, 1230, 1242
BfmI	CTRYAG	1 cut(s)	72
BfuAI	ACCTGC	1 cut(s)	1412
BglII	AGATCT	2 cut(s)	676, 733
BisI	GCNGC	4 cut(s)	662, 970, 993, 1030
BlnI	CCTAGG	1 cut(s)	65
BlsI	GCNGC	4 cut(s)	663, 971, 994, 1031
Bme1390I	CCNGG	1 cut(s)	1117
Bme18I	GGWCC	1 cut(s)	62
BmeT110I	CYCGRG	1 cut(s)	926
BmgT120I	GGNCC	1 cut(s)	62
BmiI	GGNNCC	4 cut(s)	63, 286, 487, 547
BmrFI	CCNGG	1 cut(s)	1117
BmsI	GCATC	7 cut(s)	219, 780, 951, 979, 1182, 1297, 1384
BmtI	GCTAGC	2 cut(s)	9, 890
BpiI	GAAGAC	3 cut(s)	36, 530, 1118
BplI	GAGNNNNNCTC	4 cut(s)	332, 364, 1069, 1101
BpmI	CTGGAG	1 cut(s)	1043
BsaI	GGTCTC	1 cut(s)	1073
BsaJI	CCNNGG	3 cut(s)	65, 593, 1116
BsaXI	ACNNNNNCTCC	2 cut(s)	68, 98
Bsc4I	CCNNNNNNNGG	1 cut(s)	1063
Bse1I	ACTGG	2 cut(s)	190, 1098
Bse3DI	GCAATG	1 cut(s)	732
BseBI	CCWGG	1 cut(s)	1117
BseDI	CCNNGG	3 cut(s)	65, 593, 1116
BseGI	GGATG	4 cut(s)	170, 994, 1086, 1188
BseLI	CCNNNNNNNGG	1 cut(s)	1063
BseMI	GCAATG	1 cut(s)	732
BseMII	CTCAG	1 cut(s)	1398
BseNI	ACTGG	2 cut(s)	190, 1098
BseSI	GKGCMC	1 cut(s)	1134
BseXI	GCAGC	4 cut(s)	648, 981, 1004, 1041
BseYI	CCCAGC	1 cut(s)	410
BsgI	GTGCAG	3 cut(s)	102, 210, 988
BshFI	GGCC	1 cut(s)	1359
BsiHKAI	GWGCWC	2 cut(s)	1134, 1158
BsiHKCI	CYCGRG	1 cut(s)	926
BslFI	GGGAC	1 cut(s)	780
BslI	CCNNNNNNNGG	1 cut(s)	1063
BsmAI	GTCTC	2 cut(s)	771, 1073
BsmFI	GGGAC	1 cut(s)	780
BsmI	GAATGC	4 cut(s)	318, 441, 760, 912
BsnI	GGCC	1 cut(s)	1359
Bso31I	GGTCTC	1 cut(s)	1073
BsoBI	CYCGRG	1 cut(s)	926
Bsp1286I	GDGCHC	3 cut(s)	548, 1134, 1158
Bsp143I	GATC	9 cut(s)	81, 237, 393, 485, 634, 676, 733, 946, 1412
Bsp19I	CCATGG	1 cut(s)	593
BspACI	CCGC	1 cut(s)	1032
BspANI	GGCC	1 cut(s)	1359
BspCNI	CTCAG	1 cut(s)	1399
BspLI	GGNNCC	4 cut(s)	63, 286, 487, 547
BspMAI	CTGCAG	1 cut(s)	76
BspMI	ACCTGC	1 cut(s)	1412
BspOI	GCTAGC	2 cut(s)	9, 890
BspPI	GGATC	5 cut(s)	232, 480, 493, 642, 1420
BspQI	GCTCTTC	1 cut(s)	468
BspTNI	GGTCTC	1 cut(s)	1073
BsrDI	GCAATG	1 cut(s)	732
BsrI	ACTGG	2 cut(s)	190, 1098
BssECI	CCNNGG	3 cut(s)	65, 593, 1116
BssMI	GATC	9 cut(s)	81, 237, 393, 485, 634, 676, 733, 946, 1412
BssT1I	CCWWGG	2 cut(s)	65, 593
Bst2UI	CCWGG	1 cut(s)	1117
Bst4CI	ACNGT	3 cut(s)	35, 298, 1136
Bst6I	CTCTTC	1 cut(s)	468
BstAPI	GCANNNNNTGC	2 cut(s)	272, 515
BstC8I	GCNNGC	8 cut(s)	7, 208, 273, 441, 600, 710, 888, 1171
BstDEI	CTNAG	3 cut(s)	214, 467, 1407
BstDSI	CCRYGG	1 cut(s)	593
BstF5I	GGATG	4 cut(s)	170, 994, 1086, 1188
BstKTI	GATC	9 cut(s)	84, 240, 396, 488, 637, 679, 736, 949, 1415
BstMAI	GTCTC	2 cut(s)	771, 1073
BstMBI	GATC	9 cut(s)	81, 237, 393, 485, 634, 676, 733, 946, 1412
BstMWI	GCNNNNNNNGC	6 cut(s)	116, 272, 515, 604, 1001, 1394
BstNI	CCWGG	1 cut(s)	1117
BstNSI	RCATGY	1 cut(s)	382
BstSCI	CCNGG	1 cut(s)	1115
BstSFI	CTRYAG	1 cut(s)	72
BstSLI	GKGCMC	1 cut(s)	1134
BstV1I	GCAGC	4 cut(s)	648, 981, 1004, 1041
BstV2I	GAAGAC	3 cut(s)	36, 530, 1118
BstX2I	RGATCY	3 cut(s)	485, 676, 733
BstXI	CCANNNNNNTGG	2 cut(s)	482, 557
BstYI	RGATCY	3 cut(s)	485, 676, 733
BsuRI	GGCC	1 cut(s)	1359
BtgI	CCRYGG	1 cut(s)	593
BtsCI	GGATG	4 cut(s)	170, 994, 1086, 1188
BtsI	GCAGTG	3 cut(s)	971, 1190, 1250
BtsIMutI	CAGTG	6 cut(s)	87, 971, 1091, 1132, 1190, 1250
BveI	ACCTGC	1 cut(s)	1412
Cac8I	GCNNGC	8 cut(s)	7, 208, 273, 441, 600, 710, 888, 1171
CaiI	CAGNNNCTG	1 cut(s)	103
Cfr13I	GGNCC	1 cut(s)	62
Csp6I	GTAC	2 cut(s)	692, 931
CspCI	CAANNNNNGTGG	2 cut(s)	408, 443
CviAII	CATG	5 cut(s)	371, 379, 506, 594, 781
CviQI	GTAC	2 cut(s)	692, 931
DdeI	CTNAG	3 cut(s)	214, 467, 1407
DpnI	GATC	9 cut(s)	83, 239, 395, 487, 636, 678, 735, 948, 1414
DpnII	GATC	9 cut(s)	81, 237, 393, 485, 634, 676, 733, 946, 1412
DraI	TTTAAA	1 cut(s)	1266
Eam1104I	CTCTTC	1 cut(s)	468
EarI	CTCTTC	1 cut(s)	468
Ecl136II	GAGCTC	1 cut(s)	1156
Eco130I	CCWWGG	2 cut(s)	65, 593
Eco24I	GRGCYC	2 cut(s)	548, 1158
Eco31I	GGTCTC	1 cut(s)	1073
Eco47I	GGWCC	1 cut(s)	62
Eco53kI	GAGCTC	1 cut(s)	1156
Eco57I	CTGAAG	2 cut(s)	31, 296
Eco88I	CYCGRG	1 cut(s)	926
EcoICRI	GAGCTC	1 cut(s)	1156
EcoO109I	RGGNCCY	1 cut(s)	62
EcoRI	GAATTC	1 cut(s)	1035
EcoRII	CCWGG	1 cut(s)	1115
EcoT14I	CCWWGG	2 cut(s)	65, 593
EcoT38I	GRGCYC	2 cut(s)	548, 1158
ErhI	CCWWGG	2 cut(s)	65, 593
FaeI	CATG	5 cut(s)	374, 382, 509, 597, 784
FaqI	GGGAC	1 cut(s)	780
FatI	CATG	5 cut(s)	370, 378, 505, 593, 780
Fnu4HI	GCNGC	4 cut(s)	662, 970, 993, 1030
FokI	GGATG	4 cut(s)	157, 1001, 1093, 1195
FriOI	GRGCYC	2 cut(s)	548, 1158
Fsp4HI	GCNGC	4 cut(s)	662, 970, 993, 1030
FspBI	CTAG	7 cut(s)	6, 66, 603, 887, 950, 1230, 1242
GluI	GCNGC	4 cut(s)	662, 970, 993, 1030
GsaI	CCCAGC	1 cut(s)	414
GsuI	CTGGAG	1 cut(s)	1043
HaeIII	GGCC	1 cut(s)	1359
Hin1II	CATG	5 cut(s)	374, 382, 509, 597, 784
HindIII	AAGCTT	3 cut(s)	269, 835, 1208
HinfI	GANTC	5 cut(s)	92, 230, 471, 905, 1186
HphI	GGTGA	2 cut(s)	121, 914
Hpy166II	GTNNAC	3 cut(s)	1126, 1132, 1451
Hpy188I	TCNGA	9 cut(s)	22, 315, 490, 634, 776, 817, 1025, 1160, 1408
Hpy188III	TCNNGA	4 cut(s)	566, 926, 1060, 1177
Hpy8I	GTNNAC	3 cut(s)	1126, 1132, 1451
HpyCH4III	ACNGT	3 cut(s)	35, 298, 1136
HpyCH4IV	ACGT	2 cut(s)	829, 1128
HpyF10VI	GCNNNNNNNGC	6 cut(s)	116, 272, 515, 604, 1001, 1394
HpyF3I	CTNAG	3 cut(s)	214, 467, 1407
HpySE526I	ACGT	2 cut(s)	829, 1128
Hsp92II	CATG	5 cut(s)	374, 382, 509, 597, 784
Kzo9I	GATC	9 cut(s)	81, 237, 393, 485, 634, 676, 733, 946, 1412
LguI	GCTCTTC	1 cut(s)	468
LmnI	GCTCC	3 cut(s)	551, 1153, 1385
Lsp1109I	GCAGC	4 cut(s)	648, 981, 1004, 1041
LweI	GCATC	7 cut(s)	219, 780, 951, 979, 1182, 1297, 1384
MaeI	CTAG	7 cut(s)	6, 66, 603, 887, 950, 1230, 1242
MaeII	ACGT	2 cut(s)	829, 1128
MaeIII	GTNAC	2 cut(s)	149, 224
MalI	GATC	9 cut(s)	83, 239, 395, 487, 636, 678, 735, 948, 1414
MboI	GATC	9 cut(s)	81, 237, 393, 485, 634, 676, 733, 946, 1412
MboII	GAAGA	8 cut(s)	37, 41, 455, 535, 686, 854, 1123, 1348
MflI	RGATCY	3 cut(s)	485, 676, 733
MhlI	GDGCHC	3 cut(s)	548, 1134, 1158
MluCI	AATT	8 cut(s)	160, 220, 278, 323, 1035, 1272, 1364, 1377
MlyI	GAGTC	2 cut(s)	224, 465
MmeI	TCCRAC	3 cut(s)	499, 538, 612
MnlI	CCTC	8 cut(s)	657, 809, 904, 1067, 1071, 1173, 1402, 1439
MseI	TTAA	3 cut(s)	954, 1265, 1353
MspA1I	CMGCKG	2 cut(s)	661, 1032
MspR9I	CCNGG	1 cut(s)	1117
Mva1269I	GAATGC	4 cut(s)	318, 441, 760, 912
MvaI	CCWGG	1 cut(s)	1117
MwoI	GCNNNNNNNGC	6 cut(s)	116, 272, 515, 604, 1001, 1394
NcoI	CCATGG	1 cut(s)	593
NdeII	GATC	9 cut(s)	81, 237, 393, 485, 634, 676, 733, 946, 1412
NheI	GCTAGC	2 cut(s)	5, 886
NlaIII	CATG	5 cut(s)	374, 382, 509, 597, 784
NlaIV	GGNNCC	4 cut(s)	63, 286, 487, 547
NmuCI	GTSAC	2 cut(s)	149, 224
NspI	RCATGY	1 cut(s)	382
PaeR7I	CTCGAG	1 cut(s)	926
PciSI	GCTCTTC	1 cut(s)	468
PctI	GAATGC	4 cut(s)	318, 441, 760, 912
PfeI	GAWTC	3 cut(s)	92, 905, 1186
PkrI	GCNGC	4 cut(s)	663, 971, 994, 1031
PleI	GAGTC	2 cut(s)	224, 465
PpsI	GAGTC	2 cut(s)	224, 465
PpuMI	RGGWCCY	1 cut(s)	62
PsiI	TTATAA	1 cut(s)	687
Psp124BI	GAGCTC	1 cut(s)	1158
Psp5II	RGGWCCY	1 cut(s)	62
Psp6I	CCWGG	1 cut(s)	1115
PspFI	CCCAGC	1 cut(s)	410
PspGI	CCWGG	1 cut(s)	1115
PspN4I	GGNNCC	4 cut(s)	63, 286, 487, 547
PspPI	GGNCC	1 cut(s)	62
PspPPI	RGGWCCY	1 cut(s)	62
PstI	CTGCAG	1 cut(s)	76
PstNI	CAGNNNCTG	1 cut(s)	103
PsuI	RGATCY	3 cut(s)	485, 676, 733
PvuII	CAGCTG	1 cut(s)	661
RsaI	GTAC	2 cut(s)	693, 932
RsaNI	GTAC	2 cut(s)	692, 931
SacI	GAGCTC	1 cut(s)	1158
SapI	GCTCTTC	1 cut(s)	468
SaqAI	TTAA	3 cut(s)	954, 1265, 1353
SatI	GCNGC	4 cut(s)	662, 970, 993, 1030
Sau3AI	GATC	9 cut(s)	81, 237, 393, 485, 634, 676, 733, 946, 1412
Sau96I	GGNCC	1 cut(s)	62
SchI	GAGTC	2 cut(s)	224, 465
ScrFI	CCNGG	1 cut(s)	1117
SduI	GDGCHC	3 cut(s)	548, 1134, 1158
SfaNI	GCATC	7 cut(s)	219, 780, 951, 979, 1182, 1297, 1384
SfcI	CTRYAG	1 cut(s)	72
Sfr274I	CTCGAG	1 cut(s)	926
SinI	GGWCC	1 cut(s)	62
SlaI	CTCGAG	1 cut(s)	926
SmlI	CTYRAG	1 cut(s)	926
SmoI	CTYRAG	1 cut(s)	926
SpeI	ACTAGT	1 cut(s)	1241
Sse9I	AATT	8 cut(s)	160, 220, 278, 323, 1035, 1272, 1364, 1377
SsiI	CCGC	1 cut(s)	1032
SspMI	CTAG	7 cut(s)	6, 66, 603, 887, 950, 1230, 1242
SstI	GAGCTC	1 cut(s)	1158
StyD4I	CCNGG	1 cut(s)	1115
StyI	CCWWGG	2 cut(s)	65, 593
TaaI	ACNGT	3 cut(s)	35, 298, 1136
TaiI	ACGT	2 cut(s)	832, 1131
TaqI	TCGA	3 cut(s)	300, 927, 1176
TasI	AATT	8 cut(s)	160, 220, 278, 323, 1035, 1272, 1364, 1377
TfiI	GAWTC	3 cut(s)	92, 905, 1186
Tru1I	TTAA	3 cut(s)	954, 1265, 1353
Tru9I	TTAA	3 cut(s)	954, 1265, 1353
TscAI	CASTG	6 cut(s)	94, 971, 1098, 1139, 1197, 1257
TseFI	GTSAC	2 cut(s)	149, 224
TseI	GCWGC	4 cut(s)	661, 969, 992, 1029
Tsp45I	GTSAC	2 cut(s)	149, 224
TspDTI	ATGAA	4 cut(s)	317, 419, 896, 1331
TspRI	CASTG	6 cut(s)	94, 971, 1098, 1139, 1197, 1257
VneI	GTGCAC	1 cut(s)	1130
VpaK11BI	GGWCC	1 cut(s)	62
XapI	RAATTY	4 cut(s)	278, 1035, 1364, 1377
XceI	RCATGY	1 cut(s)	382
XhoI	CTCGAG	1 cut(s)	926
XmaJI	CCTAGG	1 cut(s)	65
XspI	CTAG	7 cut(s)	6, 66, 603, 887, 950, 1230, 1242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.