Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0008875

Physical Location & Seq

Genomic Coordinates Reverse (-)

58897181 .. 58897912

Gene Structure 732 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG405100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGCAAGATCTAATACCAATCATTGAGAATGCAGGAGAACCAAGCATCAGAGACATGATTTTAGAAAGTCCCCTCATCAAACAACTCTCTGAACTCTTGCAACGTGGAAGCTCTGAACATAATTCAATGAAATCTCAAGCTGCCTTTCTATTGATGAAGCTAGCTTCCTCTGGTGGGGAATCCTGCATTAAGAAGTTTCTTGAGTACGATATTATACCCGATCTAGTTAAGATGATGCAGTGCAGCACTATAGAGTTGCAGGATGCAGCCTATACAGCACTACACCAAATGCTTTTTGGAAGCAGCGGAGTTCTCGTTTTAAACCAAATCCTCCAGATGGGTCTCATAGAGAGGATGGCTCAATCACTGGAAAGTAAATCAATGAAGACCAGGGAAGTGAATGTGCACTGTTTTCTGGATATTGTGGAGCTTGGAAACAAAGCCTGCATCGAGCAAATGTTTTCACTGCAAGTGGTGGAGAAGCTTGTGAAAATAGAAAAGGCTAGTGGGGGAACTAGTGAAAAACTGCTTGGATTCATAAAGGGAATTGATAAATGTAAGCATCTATCTATGGCAGAGCGTAGAGTGATGAAACAACAAGTGGTTAGGAAGATAAGGGCTTCCCTTAAAGGCCATAAATTTGAGTTTCAAATTTTGGGAGCTGTTGATGCTTGTGTATCTGAGGGCTCAAAAGTAGGTAGTAGCAGTAGAGGTAAACACAAAAGGGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

243

Amino Acids

26.94

Weight (kDa)

8.97

Isoelectric Point (pI)

52.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008875)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g30240 FvH4_6g30241
prunus_persica	Prupe.3G081300_v2.0.a1 Prupe.3G081300_v2.0.a1 Prupe.3G081300_v2.0.a1 Prupe.3G081300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0136481
rosa_laevigata	RLG00000019535
rosa_multiflora	Rmu_co8277351.1_g000001 Rmu_co8287839.1_g000001 Rmu_ssc0000040.1_g000001
rosa_roxburghii	Rroxscaffold_2G00108250
rosa_rugosa	Rorug02G0331000 Rorug02G0331100 Rorug02G0331200
rosa_samantha	Rh2AG381900 Rh2AG382000 Rh2BG388600 Rh2CG368300 Rh2DG405100 Rh2DG405200 Rh2DG405300
rosa_wichuraiana	Rw2G031220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	306
AcsI	RAATTY	2 cut(s)	638, 651
AfaI	GTAC	1 cut(s)	206
AfiI	CCNNNNNNNGG	2 cut(s)	174, 337
AgsI	TTSAA	2 cut(s)	126, 650
AhlI	ACTAGT	1 cut(s)	515
AjnI	CCWGG	1 cut(s)	389
AjuI	GAANNNNNNNTTGG	2 cut(s)	513, 545
AluBI	AGCT	7 cut(s)	111, 140, 160, 164, 430, 484, 662
AluI	AGCT	7 cut(s)	111, 140, 160, 164, 430, 484, 662
Alw21I	GWGCWC	1 cut(s)	408
Alw26I	GTCTC	2 cut(s)	45, 347
Alw44I	GTGCAC	1 cut(s)	404
AoxI	GGCC	1 cut(s)	631
ApaLI	GTGCAC	1 cut(s)	404
ApeKI	GCWGC	4 cut(s)	140, 243, 266, 303
ApoI	RAATTY	2 cut(s)	638, 651
AsuNHI	GCTAGC	1 cut(s)	160
BaeGI	GKGCMC	1 cut(s)	408
BanII	GRGCYC	1 cut(s)	689
BbsI	GAAGAC	1 cut(s)	392
Bbv12I	GWGCWC	1 cut(s)	408
BbvI	GCAGC	4 cut(s)	127, 255, 278, 315
BccI	CCATC	2 cut(s)	331, 349
BciT130I	CCWGG	1 cut(s)	391
BcoDI	GTCTC	2 cut(s)	45, 347
BcuI	ACTAGT	1 cut(s)	515
BfaI	CTAG	4 cut(s)	161, 224, 504, 516
BfmI	CTRYAG	1 cut(s)	249
BglII	AGATCT	1 cut(s)	7
BisI	GCNGC	4 cut(s)	141, 244, 267, 304
BlsI	GCNGC	4 cut(s)	142, 245, 268, 305
Bme1390I	CCNGG	1 cut(s)	391
BmrFI	CCNGG	1 cut(s)	391
BmsI	GCATC	6 cut(s)	54, 225, 253, 456, 571, 658
BmtI	GCTAGC	1 cut(s)	164
BpiI	GAAGAC	1 cut(s)	392
BplI	GAGNNNNNCTC	2 cut(s)	343, 375
BpmI	CTGGAG	1 cut(s)	317
BpuEI	CTTGAG	2 cut(s)	120, 221
BsaI	GGTCTC	1 cut(s)	347
BsaJI	CCNNGG	1 cut(s)	390
BsaXI	ACNNNNNCTCC	2 cut(s)	300, 330
Bsc4I	CCNNNNNNNGG	2 cut(s)	174, 337
Bse1I	ACTGG	1 cut(s)	372
BseBI	CCWGG	1 cut(s)	391
BseDI	CCNNGG	1 cut(s)	390
BseGI	GGATG	2 cut(s)	268, 360
BseLI	CCNNNNNNNGG	2 cut(s)	174, 337
BseMII	CTCAG	1 cut(s)	672
BseNI	ACTGG	1 cut(s)	372
BseSI	GKGCMC	1 cut(s)	408
BseXI	GCAGC	4 cut(s)	127, 255, 278, 315
BsgI	GTGCAG	1 cut(s)	262
BshFI	GGCC	1 cut(s)	633
BsiHKAI	GWGCWC	1 cut(s)	408
BslFI	GGGAC	1 cut(s)	54
BslI	CCNNNNNNNGG	2 cut(s)	174, 337
BsmAI	GTCTC	2 cut(s)	45, 347
BsmFI	GGGAC	1 cut(s)	54
BsmI	GAATGC	1 cut(s)	34
BsnI	GGCC	1 cut(s)	633
Bso31I	GGTCTC	1 cut(s)	347
Bsp1286I	GDGCHC	2 cut(s)	408, 689
Bsp143I	GATC	2 cut(s)	7, 220
BspACI	CCGC	1 cut(s)	306
BspANI	GGCC	1 cut(s)	633
BspCNI	CTCAG	1 cut(s)	673
BspOI	GCTAGC	1 cut(s)	164
BspTNI	GGTCTC	1 cut(s)	347
BsrI	ACTGG	1 cut(s)	372
BssECI	CCNNGG	1 cut(s)	390
BssMI	GATC	2 cut(s)	7, 220
Bst2UI	CCWGG	1 cut(s)	391
Bst4CI	ACNGT	1 cut(s)	410
BstC8I	GCNNGC	2 cut(s)	162, 445
BstDEI	CTNAG	1 cut(s)	681
BstF5I	GGATG	2 cut(s)	268, 360
BstKTI	GATC	2 cut(s)	10, 223
BstMAI	GTCTC	2 cut(s)	45, 347
BstMBI	GATC	2 cut(s)	7, 220
BstMWI	GCNNNNNNNGC	2 cut(s)	275, 668
BstNI	CCWGG	1 cut(s)	391
BstSCI	CCNGG	1 cut(s)	389
BstSFI	CTRYAG	1 cut(s)	249
BstSLI	GKGCMC	1 cut(s)	408
BstV1I	GCAGC	4 cut(s)	127, 255, 278, 315
BstV2I	GAAGAC	1 cut(s)	392
BstX2I	RGATCY	1 cut(s)	7
BstYI	RGATCY	1 cut(s)	7
BsuRI	GGCC	1 cut(s)	633
BtsCI	GGATG	2 cut(s)	268, 360
BtsI	GCAGTG	2 cut(s)	245, 464
BtsIMutI	CAGTG	4 cut(s)	245, 365, 406, 464
Cac8I	GCNNGC	2 cut(s)	162, 445
Csp6I	GTAC	1 cut(s)	205
CviAII	CATG	1 cut(s)	55
CviQI	GTAC	1 cut(s)	205
DdeI	CTNAG	1 cut(s)	681
DpnI	GATC	2 cut(s)	9, 222
DpnII	GATC	2 cut(s)	7, 220
DraI	TTTAAA	1 cut(s)	321
Eco24I	GRGCYC	1 cut(s)	689
Eco31I	GGTCTC	1 cut(s)	347
EcoRII	CCWGG	1 cut(s)	389
EcoT38I	GRGCYC	1 cut(s)	689
FaeI	CATG	1 cut(s)	58
FaqI	GGGAC	1 cut(s)	54
FatI	CATG	1 cut(s)	54
Fnu4HI	GCNGC	4 cut(s)	141, 244, 267, 304
FokI	GGATG	2 cut(s)	275, 367
FriOI	GRGCYC	1 cut(s)	689
Fsp4HI	GCNGC	4 cut(s)	141, 244, 267, 304
FspBI	CTAG	4 cut(s)	161, 224, 504, 516
GluI	GCNGC	4 cut(s)	141, 244, 267, 304
GsuI	CTGGAG	1 cut(s)	317
HaeIII	GGCC	1 cut(s)	633
Hin1II	CATG	1 cut(s)	58
HindIII	AAGCTT	1 cut(s)	482
HinfI	GANTC	2 cut(s)	179, 534
Hpy166II	GTNNAC	2 cut(s)	406, 716
Hpy188I	TCNGA	4 cut(s)	50, 91, 115, 682
Hpy188III	TCNNGA	3 cut(s)	200, 334, 416
Hpy8I	GTNNAC	2 cut(s)	406, 716
HpyCH4III	ACNGT	1 cut(s)	410
HpyCH4IV	ACGT	1 cut(s)	103
HpyF10VI	GCNNNNNNNGC	2 cut(s)	275, 668
HpyF3I	CTNAG	1 cut(s)	681
HpySE526I	ACGT	1 cut(s)	103
Hsp92II	CATG	1 cut(s)	58
Kzo9I	GATC	2 cut(s)	7, 220
LmnI	GCTCC	2 cut(s)	427, 659
Lsp1109I	GCAGC	4 cut(s)	127, 255, 278, 315
LweI	GCATC	6 cut(s)	54, 225, 253, 456, 571, 658
MaeI	CTAG	4 cut(s)	161, 224, 504, 516
MaeII	ACGT	1 cut(s)	103
MalI	GATC	2 cut(s)	9, 222
MboI	GATC	2 cut(s)	7, 220
MboII	GAAGA	2 cut(s)	397, 622
MflI	RGATCY	1 cut(s)	7
MhlI	GDGCHC	2 cut(s)	408, 689
MluCI	AATT	4 cut(s)	121, 546, 638, 651
MnlI	CCTC	6 cut(s)	83, 178, 341, 345, 676, 704
MseI	TTAA	4 cut(s)	189, 228, 320, 627
MspA1I	CMGCKG	1 cut(s)	306
MspR9I	CCNGG	1 cut(s)	391
Mva1269I	GAATGC	1 cut(s)	34
MvaI	CCWGG	1 cut(s)	391
MwoI	GCNNNNNNNGC	2 cut(s)	275, 668
NdeII	GATC	2 cut(s)	7, 220
NheI	GCTAGC	1 cut(s)	160
NlaIII	CATG	1 cut(s)	58
PctI	GAATGC	1 cut(s)	34
PfeI	GAWTC	2 cut(s)	179, 534
PkrI	GCNGC	4 cut(s)	142, 245, 268, 305
Psp6I	CCWGG	1 cut(s)	389
PspGI	CCWGG	1 cut(s)	389
PsuI	RGATCY	1 cut(s)	7
RsaI	GTAC	1 cut(s)	206
RsaNI	GTAC	1 cut(s)	205
SaqAI	TTAA	4 cut(s)	189, 228, 320, 627
SatI	GCNGC	4 cut(s)	141, 244, 267, 304
Sau3AI	GATC	2 cut(s)	7, 220
ScrFI	CCNGG	1 cut(s)	391
SduI	GDGCHC	2 cut(s)	408, 689
SfaNI	GCATC	6 cut(s)	54, 225, 253, 456, 571, 658
SfcI	CTRYAG	1 cut(s)	249
SmlI	CTYRAG	2 cut(s)	135, 200
SmoI	CTYRAG	2 cut(s)	135, 200
SpeI	ACTAGT	1 cut(s)	515
Sse9I	AATT	4 cut(s)	121, 546, 638, 651
SsiI	CCGC	1 cut(s)	306
SspMI	CTAG	4 cut(s)	161, 224, 504, 516
StyD4I	CCNGG	1 cut(s)	389
TaaI	ACNGT	1 cut(s)	410
TaiI	ACGT	1 cut(s)	106
TaqI	TCGA	1 cut(s)	450
TasI	AATT	4 cut(s)	121, 546, 638, 651
TfiI	GAWTC	2 cut(s)	179, 534
Tru1I	TTAA	4 cut(s)	189, 228, 320, 627
Tru9I	TTAA	4 cut(s)	189, 228, 320, 627
TscAI	CASTG	4 cut(s)	245, 372, 413, 471
TseI	GCWGC	4 cut(s)	140, 243, 266, 303
TspDTI	ATGAA	5 cut(s)	143, 170, 398, 526, 605
TspRI	CASTG	4 cut(s)	245, 372, 413, 471
VneI	GTGCAC	1 cut(s)	404
XapI	RAATTY	2 cut(s)	638, 651
XcmI	CCANNNNNNNNNTGG	1 cut(s)	293
XspI	CTAG	4 cut(s)	161, 224, 504, 516

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.