Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0008875

Physical Location & Seq

Genomic Coordinates Reverse (-)

41037918 .. 41041733

Gene Structure 3816 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0331100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGAGAACTTATCTTGTGCCGATTGGAAAAGTGATGGACATACGTAACCAAATGATAAATGTAGAGTGGCACGGAGGTGCTAAAATGTTGGATCTGGAAGTTTCTACACCGACAGAGGCTTTTGTCTACAATATCAGCGGGTTTAGTCATTCATCAAATCCAATTTCAAAGCCACCATCTTTGTTGCATACCCAAGCTCAGAAGCACAACCATTCATCCAGAGAGAACAATTATCAAGAACACAAATCAGAAACGATTCGAGCTCTGTTTTCGGAATCCAAAAGAAAGAAGGAAAATCCAATTCCAAACGACTTCGATCGTCTTCTTGAGCATACAAGAGAGAGAGAGAGAGAGAGACCGGGAGAAGAAGGGGAAGTGATGGCATCTACCAGCACAACGAAACGGGTCAAAAGATTGTTGGAAGGAGGATGTAAACCTAATCAATTTTATCAAGTTAATTCAAAGAGATGGAAAAGAATGTTTAAGGAACAAGTAGTTGAAGGATCGAATACAGTTGGAGATGAAGATGCGTTCGCAATGCCGGAAGATTCTAATGAGTGTGGTTTTGTTGAAATACTAGGCCTGCTGCTTGATTTCCTGACATATCCAGTTGAGCAGTCAGAGATCTTTGAAGGATTGAGCTCCAGAATCAAAAGAAGCATTTGCTTTTCTGGTAGCCAAATCTTAATTGGAATGGAACAACTTGGCCAGAACAAGCTAAGCTCCAGAAAAGGGCCACTGTTAGTTTCGATGGTGTTGGACAAAACAGAATCAGAAGCCGGCTTTAACAGCAAATCCAAAAAGAGAACTTCGGTGAACAAGAAAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

276

Amino Acids

31.43

Weight (kDa)

8.98

Isoelectric Point (pI)

51.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008875)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g30240 FvH4_6g30241
prunus_persica	Prupe.3G081300_v2.0.a1 Prupe.3G081300_v2.0.a1 Prupe.3G081300_v2.0.a1 Prupe.3G081300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0136481
rosa_laevigata	RLG00000019535
rosa_multiflora	Rmu_co8277351.1_g000001 Rmu_co8287839.1_g000001 Rmu_ssc0000040.1_g000001
rosa_roxburghii	Rroxscaffold_2G00108250
rosa_rugosa	Rorug02G0331000 Rorug02G0331100 Rorug02G0331200
rosa_samantha	Rh2AG381900 Rh2AG382000 Rh2BG388600 Rh2CG368300 Rh2DG405100 Rh2DG405200 Rh2DG405300
rosa_wichuraiana	Rw2G031220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	126
AciI	CCGC	1 cut(s)	138
AclWI	GGATC	2 cut(s)	99, 511
AcoI	YGGCCR	1 cut(s)	706
AfiI	CCNNNNNNNGG	1 cut(s)	732
AgsI	TTSAA	5 cut(s)	168, 462, 500, 572, 632
AleI	CACNNNNGTG	1 cut(s)	75
AluBI	AGCT	5 cut(s)	197, 263, 642, 718, 723
AluI	AGCT	5 cut(s)	197, 263, 642, 718, 723
Alw21I	GWGCWC	2 cut(s)	265, 644
Alw26I	GTCTC	1 cut(s)	349
AlwI	GGATC	2 cut(s)	99, 511
AoxI	GGCC	3 cut(s)	580, 706, 734
ApeKI	GCWGC	1 cut(s)	586
Asp700I	GAANNNNTTC	1 cut(s)	255
AspS9I	GGNCC	1 cut(s)	734
AsuC2I	CCSGG	1 cut(s)	360
AsuHPI	GGTGA	1 cut(s)	826
BalI	TGGCCA	1 cut(s)	708
BanII	GRGCYC	2 cut(s)	265, 644
BbsI	GAAGAC	1 cut(s)	314
Bbv12I	GWGCWC	2 cut(s)	265, 644
BbvI	GCAGC	1 cut(s)	573
BccI	CCATC	5 cut(s)	28, 184, 373, 462, 745
BcnI	CCSGG	1 cut(s)	360
BcoDI	GTCTC	1 cut(s)	349
BfaI	CTAG	1 cut(s)	578
BglII	AGATCT	1 cut(s)	624
BisI	GCNGC	1 cut(s)	587
BlpI	GCTNAGC	1 cut(s)	719
BlsI	GCNGC	1 cut(s)	588
Bme1390I	CCNGG	1 cut(s)	360
BmgT120I	GGNCC	1 cut(s)	734
BmrFI	CCNGG	1 cut(s)	360
BmsI	GCATC	2 cut(s)	392, 517
BpiI	GAAGAC	1 cut(s)	314
BpmI	CTGGAG	2 cut(s)	628, 709
Bpu1102I	GCTNAGC	1 cut(s)	719
BpuEI	CTTGAG	1 cut(s)	347
BpuMI	CCSGG	1 cut(s)	360
BsaAI	YACGTR	1 cut(s)	44
BsaI	GGTCTC	1 cut(s)	349
Bsc4I	CCNNNNNNNGG	1 cut(s)	732
Bse118I	RCCGGY	1 cut(s)	779
Bse1I	ACTGG	1 cut(s)	608
Bse3DI	GCAATG	1 cut(s)	543
BseGI	GGATG	2 cut(s)	215, 434
BseLI	CCNNNNNNNGG	1 cut(s)	732
BseMI	GCAATG	1 cut(s)	543
BseMII	CTCAG	1 cut(s)	212
BseNI	ACTGG	1 cut(s)	608
BseXI	GCAGC	1 cut(s)	573
Bsh1285I	CGRYCG	1 cut(s)	319
BshFI	GGCC	3 cut(s)	582, 708, 736
BsiEI	CGRYCG	1 cut(s)	319
BsiHKAI	GWGCWC	2 cut(s)	265, 644
BsiSI	CCGG	3 cut(s)	359, 542, 780
BslI	CCNNNNNNNGG	1 cut(s)	732
BsmAI	GTCTC	1 cut(s)	349
BsnI	GGCC	3 cut(s)	582, 708, 736
Bso31I	GGTCTC	1 cut(s)	349
Bsp1286I	GDGCHC	2 cut(s)	265, 644
Bsp143I	GATC	4 cut(s)	91, 316, 503, 624
Bsp1720I	GCTNAGC	1 cut(s)	719
BspACI	CCGC	1 cut(s)	138
BspANI	GGCC	3 cut(s)	582, 708, 736
BspCNI	CTCAG	1 cut(s)	211
BspPI	GGATC	2 cut(s)	99, 511
BspTNI	GGTCTC	1 cut(s)	349
BsrDI	GCAATG	1 cut(s)	543
BsrFI	RCCGGY	1 cut(s)	779
BsrI	ACTGG	1 cut(s)	608
BssAI	RCCGGY	1 cut(s)	779
BssMI	GATC	4 cut(s)	91, 316, 503, 624
Bst4CI	ACNGT	2 cut(s)	514, 741
BstBAI	YACGTR	1 cut(s)	44
BstC8I	GCNNGC	2 cut(s)	584, 781
BstDEI	CTNAG	2 cut(s)	198, 719
BstF5I	GGATG	2 cut(s)	215, 434
BstKTI	GATC	4 cut(s)	94, 319, 506, 627
BstMAI	GTCTC	1 cut(s)	349
BstMBI	GATC	4 cut(s)	91, 316, 503, 624
BstMCI	CGRYCG	1 cut(s)	319
BstMWI	GCNNNNNNNGC	1 cut(s)	789
BstSCI	CCNGG	1 cut(s)	358
BstSNI	TACGTA	1 cut(s)	44
BstV1I	GCAGC	1 cut(s)	573
BstV2I	GAAGAC	1 cut(s)	314
BstX2I	RGATCY	2 cut(s)	91, 624
BstYI	RGATCY	2 cut(s)	91, 624
BsuRI	GGCC	3 cut(s)	582, 708, 736
BtsCI	GGATG	2 cut(s)	215, 434
BtsIMutI	CAGTG	1 cut(s)	737
Cac8I	GCNNGC	2 cut(s)	584, 781
Cfr10I	RCCGGY	1 cut(s)	779
Cfr13I	GGNCC	1 cut(s)	734
CspCI	CAANNNNNGTGG	2 cut(s)	162, 197
DdeI	CTNAG	2 cut(s)	198, 719
DpnI	GATC	4 cut(s)	93, 318, 505, 626
DpnII	GATC	4 cut(s)	91, 316, 503, 624
EaeI	YGGCCR	1 cut(s)	706
Ecl136II	GAGCTC	2 cut(s)	263, 642
Eco105I	TACGTA	1 cut(s)	44
Eco147I	AGGCCT	1 cut(s)	582
Eco24I	GRGCYC	2 cut(s)	265, 644
Eco31I	GGTCTC	1 cut(s)	349
Eco53kI	GAGCTC	2 cut(s)	263, 642
EcoICRI	GAGCTC	2 cut(s)	263, 642
EcoT38I	GRGCYC	2 cut(s)	265, 644
FaiI	YATR	4 cut(s)	41, 189, 333, 604
FauI	CCCGC	1 cut(s)	131
FblI	GTMKAC	1 cut(s)	126
Fnu4HI	GCNGC	1 cut(s)	587
FokI	GGATG	2 cut(s)	202, 441
FriOI	GRGCYC	2 cut(s)	265, 644
Fsp4HI	GCNGC	1 cut(s)	587
FspBI	CTAG	1 cut(s)	578
GluI	GCNGC	1 cut(s)	587
GsuI	CTGGAG	2 cut(s)	628, 709
HaeIII	GGCC	3 cut(s)	582, 708, 736
HapII	CCGG	3 cut(s)	359, 542, 780
HinfI	GANTC	5 cut(s)	256, 275, 548, 648, 770
HpaII	CCGG	3 cut(s)	359, 542, 780
HphI	GGTGA	1 cut(s)	826
Hpy166II	GTNNAC	3 cut(s)	127, 434, 817
Hpy188I	TCNGA	5 cut(s)	201, 250, 274, 622, 775
Hpy188III	TCNNGA	7 cut(s)	95, 219, 236, 326, 598, 645, 726
Hpy8I	GTNNAC	3 cut(s)	127, 434, 817
HpyAV	CCTTC	5 cut(s)	283, 362, 416, 494, 626
HpyCH4III	ACNGT	2 cut(s)	514, 741
HpyCH4IV	ACGT	1 cut(s)	43
HpyCH4V	TGCA	1 cut(s)	187
HpyF10VI	GCNNNNNNNGC	1 cut(s)	789
HpyF3I	CTNAG	2 cut(s)	198, 719
HpySE526I	ACGT	1 cut(s)	43
KroI	GCCGGC	1 cut(s)	779
KroNI	GCCGGC	1 cut(s)	781
Kzo9I	GATC	4 cut(s)	91, 316, 503, 624
LmnI	GCTCC	2 cut(s)	647, 728
Lsp1109I	GCAGC	1 cut(s)	573
LweI	GCATC	2 cut(s)	392, 517
MaeI	CTAG	1 cut(s)	578
MaeII	ACGT	1 cut(s)	43
MaeIII	GTNAC	1 cut(s)	44
MalI	GATC	4 cut(s)	93, 318, 505, 626
MboI	GATC	4 cut(s)	91, 316, 503, 624
MboII	GAAGA	4 cut(s)	314, 377, 536, 557
MflI	RGATCY	2 cut(s)	91, 624
MhlI	GDGCHC	2 cut(s)	265, 644
MlsI	TGGCCA	1 cut(s)	708
MluCI	AATT	6 cut(s)	162, 229, 300, 443, 457, 687
MluNI	TGGCCA	1 cut(s)	708
MmeI	TCCRAC	4 cut(s)	69, 399, 496, 738
MnlI	CCTC	3 cut(s)	68, 109, 419
Mox20I	TGGCCA	1 cut(s)	708
MroNI	GCCGGC	1 cut(s)	779
MroXI	GAANNNNTTC	1 cut(s)	255
MscI	TGGCCA	1 cut(s)	708
MseI	TTAA	4 cut(s)	456, 483, 686, 786
MslI	CAYNNNNRTG	1 cut(s)	75
Msp20I	TGGCCA	1 cut(s)	708
MspA1I	CMGCKG	1 cut(s)	138
MspI	CCGG	3 cut(s)	359, 542, 780
MspR9I	CCNGG	1 cut(s)	360
MwoI	GCNNNNNNNGC	1 cut(s)	789
NaeI	GCCGGC	1 cut(s)	781
NciI	CCSGG	1 cut(s)	360
NdeII	GATC	4 cut(s)	91, 316, 503, 624
NgoMIV	GCCGGC	1 cut(s)	779
OliI	CACNNNNGTG	1 cut(s)	75
PceI	AGGCCT	1 cut(s)	582
PdiI	GCCGGC	1 cut(s)	781
PdmI	GAANNNNTTC	1 cut(s)	255
PfeI	GAWTC	5 cut(s)	256, 275, 548, 648, 770
PkrI	GCNGC	1 cut(s)	588
Ple19I	CGATCG	1 cut(s)	319
Ppu21I	YACGTR	1 cut(s)	44
Psp124BI	GAGCTC	2 cut(s)	265, 644
PspPI	GGNCC	1 cut(s)	734
PsuI	RGATCY	2 cut(s)	91, 624
PvuI	CGATCG	1 cut(s)	319
RseI	CAYNNNNRTG	1 cut(s)	75
SacI	GAGCTC	2 cut(s)	265, 644
SaqAI	TTAA	4 cut(s)	456, 483, 686, 786
SatI	GCNGC	1 cut(s)	587
Sau3AI	GATC	4 cut(s)	91, 316, 503, 624
Sau96I	GGNCC	1 cut(s)	734
ScrFI	CCNGG	1 cut(s)	360
SduI	GDGCHC	2 cut(s)	265, 644
SetI	ASST	8 cut(s)	46, 79, 199, 265, 439, 644, 720, 725
SfaNI	GCATC	2 cut(s)	392, 517
SmiMI	CAYNNNNRTG	1 cut(s)	75
SmlI	CTYRAG	1 cut(s)	326
SmoI	CTYRAG	1 cut(s)	326
SnaBI	TACGTA	1 cut(s)	44
Sse9I	AATT	6 cut(s)	162, 229, 300, 443, 457, 687
SseBI	AGGCCT	1 cut(s)	582
SsiI	CCGC	1 cut(s)	138
SspMI	CTAG	1 cut(s)	578
SstI	GAGCTC	2 cut(s)	265, 644
StuI	AGGCCT	1 cut(s)	582
StyD4I	CCNGG	1 cut(s)	358
TaaI	ACNGT	2 cut(s)	514, 741
TaiI	ACGT	1 cut(s)	46
TaqI	TCGA	4 cut(s)	259, 315, 506, 749
TasI	AATT	6 cut(s)	162, 229, 300, 443, 457, 687
TfiI	GAWTC	5 cut(s)	256, 275, 548, 648, 770
Tru1I	TTAA	4 cut(s)	456, 483, 686, 786
Tru9I	TTAA	4 cut(s)	456, 483, 686, 786
TscAI	CASTG	1 cut(s)	744
TseI	GCWGC	1 cut(s)	586
TspDTI	ATGAA	3 cut(s)	141, 204, 537
TspGWI	ACGGA	1 cut(s)	87
TspRI	CASTG	1 cut(s)	744
XcmI	CCANNNNNNNNNTGG	1 cut(s)	686
XmiI	GTMKAC	1 cut(s)	126
XmnI	GAANNNNTTC	1 cut(s)	255
XspI	CTAG	1 cut(s)	578

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.