Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0008875

Physical Location & Seq

Genomic Coordinates Reverse (-)

58898000 .. 58898638

Gene Structure 639 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG405200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGCTAGCAAGTCCATATCAGAACTTGAAGAAAGTAGAGCAAACTTTAGTAACTTATTGGGTCCTAGGACTGCAGACCTGATCTCCACTGAATCACAGAGCTTGATTGCTGTGTCTGCACAAGCCATCACCACTGTATTTAGCAAGAGTGACTATTGCAATTATTTTCCATCCCTTGAATATACTGGTGCAGTCAGCAAGTTGGCTTGCATCTTAGAAAATTGTGATGACCCTGTGATCCAAACAGATATTTCAGTTGTTCTTGCAAAGCTTGCAGAATTTGGAAGCCAAGAGACGGTCGATAAGGTGCTTCAGAGCATTCAATTTCATCAGTTGGCAGAGTTGCTCTCTCCAAATAATGAGCAATGGCATGATAGTGTGTTTTCAATACTGATCTCATTGATGAAAGCTGGGAAATTAAAAGCTGTGGAGAGAATGCTTGCTTTTGAGATTGATAAGACTCTTCTTAGACTCCTACAGAATGGATCCGAAGTAGCTCAACACCATGCAATAGTTGCATTGAAGACATTTTATGAGTTGAGAGGCCCCCATCTGGTTGGATCTCTTGAACCCAAAAATATAAACCTTTTGCCATGGCAAGCTAGACATTGTTTGGAGAGATTTCTTTTGTTGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

212

Amino Acids

23.6

Weight (kDa)

5.38

Isoelectric Point (pI)

40.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008875)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g30240 FvH4_6g30241
prunus_persica	Prupe.3G081300_v2.0.a1 Prupe.3G081300_v2.0.a1 Prupe.3G081300_v2.0.a1 Prupe.3G081300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0136481
rosa_laevigata	RLG00000019535
rosa_multiflora	Rmu_co8277351.1_g000001 Rmu_co8287839.1_g000001 Rmu_ssc0000040.1_g000001
rosa_roxburghii	Rroxscaffold_2G00108250
rosa_rugosa	Rorug02G0331000 Rorug02G0331100 Rorug02G0331200
rosa_samantha	Rh2AG381900 Rh2AG382000 Rh2BG388600 Rh2CG368300 Rh2DG405100 Rh2DG405200 Rh2DG405300
rosa_wichuraiana	Rw2G031220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	4 cut(s)	232, 480, 493, 568
AcsI	RAATTY	1 cut(s)	278
AcuI	CTGAAG	1 cut(s)	296
AfiI	CCNNNNNNNGG	2 cut(s)	295, 553
AgsI	TTSAA	6 cut(s)	29, 179, 323, 387, 523, 569
AluBI	AGCT	6 cut(s)	102, 271, 410, 425, 497, 602
AluI	AGCT	6 cut(s)	102, 271, 410, 425, 497, 602
Alw26I	GTCTC	1 cut(s)	287
AlwI	GGATC	4 cut(s)	232, 480, 493, 568
AoxI	GGCC	1 cut(s)	544
ApoI	RAATTY	1 cut(s)	278
AspA2I	CCTAGG	1 cut(s)	65
AspS9I	GGNCC	2 cut(s)	62, 545
AsuHPI	GGTGA	1 cut(s)	121
AsuNHI	GCTAGC	1 cut(s)	5
AvaII	GGWCC	1 cut(s)	62
AvrII	CCTAGG	1 cut(s)	65
BamHI	GGATCC	1 cut(s)	485
BbsI	GAAGAC	1 cut(s)	530
BccI	CCATC	3 cut(s)	134, 178, 558
BcoDI	GTCTC	1 cut(s)	287
BfaI	CTAG	3 cut(s)	6, 66, 603
BfmI	CTRYAG	2 cut(s)	72, 476
BlnI	CCTAGG	1 cut(s)	65
Bme18I	GGWCC	1 cut(s)	62
BmgT120I	GGNCC	2 cut(s)	62, 545
BmiI	GGNNCC	3 cut(s)	63, 487, 547
BmsI	GCATC	1 cut(s)	219
BmtI	GCTAGC	1 cut(s)	9
BpiI	GAAGAC	1 cut(s)	530
BplI	GAGNNNNNCTC	2 cut(s)	332, 364
BsaJI	CCNNGG	2 cut(s)	65, 593
BsaXI	ACNNNNNCTCC	2 cut(s)	68, 98
Bsc4I	CCNNNNNNNGG	2 cut(s)	295, 553
Bse1I	ACTGG	1 cut(s)	190
Bse3DI	GCAATG	1 cut(s)	371
BseDI	CCNNGG	2 cut(s)	65, 593
BseGI	GGATG	1 cut(s)	170
BseLI	CCNNNNNNNGG	2 cut(s)	295, 553
BseMI	GCAATG	1 cut(s)	371
BseNI	ACTGG	1 cut(s)	190
BseYI	CCCAGC	1 cut(s)	410
BsgI	GTGCAG	2 cut(s)	102, 210
Bsh1285I	CGRYCG	1 cut(s)	300
BshFI	GGCC	1 cut(s)	546
BsiEI	CGRYCG	1 cut(s)	300
BslI	CCNNNNNNNGG	2 cut(s)	295, 553
BsmAI	GTCTC	1 cut(s)	287
BsmBI	CGTCTC	1 cut(s)	287
BsmI	GAATGC	2 cut(s)	318, 441
BsnI	GGCC	1 cut(s)	546
Bsp143I	GATC	5 cut(s)	81, 237, 393, 485, 560
Bsp19I	CCATGG	1 cut(s)	593
BspANI	GGCC	1 cut(s)	546
BspLI	GGNNCC	3 cut(s)	63, 487, 547
BspMAI	CTGCAG	1 cut(s)	76
BspOI	GCTAGC	1 cut(s)	9
BspPI	GGATC	4 cut(s)	232, 480, 493, 568
BsrDI	GCAATG	1 cut(s)	371
BsrI	ACTGG	1 cut(s)	190
BssECI	CCNNGG	2 cut(s)	65, 593
BssMI	GATC	5 cut(s)	81, 237, 393, 485, 560
BssT1I	CCWWGG	2 cut(s)	65, 593
Bst4CI	ACNGT	2 cut(s)	136, 298
Bst6I	CTCTTC	1 cut(s)	468
BstAPI	GCANNNNNTGC	2 cut(s)	272, 515
BstC8I	GCNNGC	5 cut(s)	7, 208, 273, 441, 600
BstDEI	CTNAG	2 cut(s)	214, 467
BstDSI	CCRYGG	1 cut(s)	593
BstF5I	GGATG	1 cut(s)	170
BstKTI	GATC	5 cut(s)	84, 240, 396, 488, 563
BstMAI	GTCTC	1 cut(s)	287
BstMBI	GATC	5 cut(s)	81, 237, 393, 485, 560
BstMCI	CGRYCG	1 cut(s)	300
BstMWI	GCNNNNNNNGC	3 cut(s)	116, 272, 515
BstSFI	CTRYAG	2 cut(s)	72, 476
BstV2I	GAAGAC	1 cut(s)	530
BstX2I	RGATCY	2 cut(s)	485, 560
BstXI	CCANNNNNNTGG	1 cut(s)	557
BstYI	RGATCY	2 cut(s)	485, 560
BsuRI	GGCC	1 cut(s)	546
BtgI	CCRYGG	1 cut(s)	593
BtsCI	GGATG	1 cut(s)	170
BtsIMutI	CAGTG	2 cut(s)	87, 132
Cac8I	GCNNGC	5 cut(s)	7, 208, 273, 441, 600
Cfr13I	GGNCC	2 cut(s)	62, 545
CviAII	CATG	3 cut(s)	371, 506, 594
DdeI	CTNAG	2 cut(s)	214, 467
DpnI	GATC	5 cut(s)	83, 239, 395, 487, 562
DpnII	GATC	5 cut(s)	81, 237, 393, 485, 560
Eam1104I	CTCTTC	1 cut(s)	468
EarI	CTCTTC	1 cut(s)	468
Eco130I	CCWWGG	2 cut(s)	65, 593
Eco47I	GGWCC	1 cut(s)	62
Eco57I	CTGAAG	1 cut(s)	296
EcoO109I	RGGNCCY	2 cut(s)	62, 545
EcoT14I	CCWWGG	2 cut(s)	65, 593
ErhI	CCWWGG	2 cut(s)	65, 593
Esp3I	CGTCTC	1 cut(s)	287
FaeI	CATG	3 cut(s)	374, 509, 597
FaiI	YATR	7 cut(s)	17, 183, 372, 507, 534, 581, 595
FatI	CATG	3 cut(s)	370, 505, 593
FokI	GGATG	1 cut(s)	157
FspBI	CTAG	3 cut(s)	6, 66, 603
GsaI	CCCAGC	1 cut(s)	414
HaeIII	GGCC	1 cut(s)	546
Hin1II	CATG	3 cut(s)	374, 509, 597
HindIII	AAGCTT	1 cut(s)	269
HinfI	GANTC	3 cut(s)	92, 460, 471
HphI	GGTGA	1 cut(s)	121
Hpy188I	TCNGA	3 cut(s)	22, 315, 490
Hpy188III	TCNNGA	1 cut(s)	566
HpyCH4III	ACNGT	2 cut(s)	136, 298
HpyCH4V	TGCA	9 cut(s)	74, 119, 159, 191, 210, 266, 275, 509, 518
HpyF10VI	GCNNNNNNNGC	3 cut(s)	116, 272, 515
HpyF3I	CTNAG	2 cut(s)	214, 467
Hsp92II	CATG	3 cut(s)	374, 509, 597
Kzo9I	GATC	5 cut(s)	81, 237, 393, 485, 560
LpnPI	CCDG	5 cut(s)	92, 171, 246, 396, 539
LweI	GCATC	1 cut(s)	219
MaeI	CTAG	3 cut(s)	6, 66, 603
MaeIII	GTNAC	2 cut(s)	50, 149
MalI	GATC	5 cut(s)	83, 239, 395, 487, 562
MboI	GATC	5 cut(s)	81, 237, 393, 485, 560
MboII	GAAGA	3 cut(s)	41, 455, 535
MflI	RGATCY	2 cut(s)	485, 560
MluCI	AATT	5 cut(s)	160, 220, 278, 323, 416
MlyI	GAGTC	2 cut(s)	454, 465
MmeI	TCCRAC	2 cut(s)	538, 612
MnlI	CCTC	1 cut(s)	536
MseI	TTAA	1 cut(s)	419
MslI	CAYNNNNRTG	1 cut(s)	375
Mva1269I	GAATGC	2 cut(s)	318, 441
MwoI	GCNNNNNNNGC	3 cut(s)	116, 272, 515
NcoI	CCATGG	1 cut(s)	593
NdeII	GATC	5 cut(s)	81, 237, 393, 485, 560
NheI	GCTAGC	1 cut(s)	5
NlaIII	CATG	3 cut(s)	374, 509, 597
NlaIV	GGNNCC	3 cut(s)	63, 487, 547
NmuCI	GTSAC	1 cut(s)	149
PctI	GAATGC	2 cut(s)	318, 441
PfeI	GAWTC	1 cut(s)	92
PleI	GAGTC	2 cut(s)	454, 465
PpsI	GAGTC	2 cut(s)	454, 465
PpuMI	RGGWCCY	1 cut(s)	62
Psp5II	RGGWCCY	1 cut(s)	62
PspFI	CCCAGC	1 cut(s)	410
PspN4I	GGNNCC	3 cut(s)	63, 487, 547
PspPI	GGNCC	2 cut(s)	62, 545
PspPPI	RGGWCCY	1 cut(s)	62
PstI	CTGCAG	1 cut(s)	76
PsuI	RGATCY	2 cut(s)	485, 560
RseI	CAYNNNNRTG	1 cut(s)	375
SaqAI	TTAA	1 cut(s)	419
Sau3AI	GATC	5 cut(s)	81, 237, 393, 485, 560
Sau96I	GGNCC	2 cut(s)	62, 545
SchI	GAGTC	2 cut(s)	454, 465
SetI	ASST	9 cut(s)	81, 104, 273, 309, 412, 427, 499, 588, 604
SfaNI	GCATC	1 cut(s)	219
SfcI	CTRYAG	2 cut(s)	72, 476
SinI	GGWCC	1 cut(s)	62
SmiMI	CAYNNNNRTG	1 cut(s)	375
Sse9I	AATT	5 cut(s)	160, 220, 278, 323, 416
SspMI	CTAG	3 cut(s)	6, 66, 603
StyI	CCWWGG	2 cut(s)	65, 593
TaaI	ACNGT	2 cut(s)	136, 298
TaqI	TCGA	1 cut(s)	300
TasI	AATT	5 cut(s)	160, 220, 278, 323, 416
TfiI	GAWTC	1 cut(s)	92
Tru1I	TTAA	1 cut(s)	419
Tru9I	TTAA	1 cut(s)	419
TscAI	CASTG	2 cut(s)	94, 139
TseFI	GTSAC	1 cut(s)	149
Tsp45I	GTSAC	1 cut(s)	149
TspDTI	ATGAA	2 cut(s)	317, 419
TspRI	CASTG	2 cut(s)	94, 139
VpaK11BI	GGWCC	1 cut(s)	62
XapI	RAATTY	1 cut(s)	278
XmaJI	CCTAGG	1 cut(s)	65
XspI	CTAG	3 cut(s)	6, 66, 603

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.