Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0008875

Physical Location & Seq

Genomic Coordinates Reverse (-)

57215699 .. 57217156

Gene Structure 1458 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG381900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1458 bp

ATGGCTAGCAAGTCCATATCAGAACTTGAAGAAAGTAGAGCAAACTTTAGTAACTTATTGGGTCCTAGGACTGCAGACCTGATCTCCACTGAATCACAGAGCTTGATTGCTGTGTCTGCACAAGCCATCACCACTGTATTTAGCAAGAGTGACTATTGCAATTATTTTCCATCCCTTGAATATACTGGTGCAGTCAGCAAGTTGGCTTGCATCTTAGAAAATTGTGATGACCCTGTGATCCAAACAGATATTTCAGTTGTTCTTGCAAAGCTTGCAGAATTTGGAAGCCAAGAGACGGTCGATAAGGTGCTTCAGAGCATTCAATTTCATCAGTTGGCAGAGTTGCTCTCTCCAAATAATGAGCAATGGCATGATAGTGTGTTTTCAATACTGATCTCATTGATGAAAGCTGGGAAATTAAAAGCTGTGGAGAGAATGCTTGCTTTTGAGATTGATAAGACTCTTCTTAGACTCCTACAGAATGGATCCGAAGTAGCTCAACACCATGCAATAGTTGCATTGAAGACATTTTATGAGTTGAGAGGCCCCCATCTGGTTGGATCTCTTGAACCCAAAAATATAAACCTTTTGCCATGGCAAGCTAGACATTGTCTGGAGAGATTTCTTTTGTTGGATCGAAGTGTTCCCCTTTTACCACAGCTGCAAACTTTTGAAGATCTTATTTATAAGGTACTACACAGTGATAGCAAGCTGGTATTGGAGGCAATGCAAGATCTAATACCAATCATAGAGAATGCAGGAGAACCAAGCATCAGAGACATGATTTTAGAAAGTCCCCTCATCAAACAACTCTCTGAACTCTTACAACGTGGAAGCTCTGAACATAATTCAACGAAATCTCAAGCTGCCTTTCTATTGATGAAGCTAGCTTCCTCTGGTGGGGAATCCTGCATTAAGAAGTTTCTTGAGTACGATATTATACCCGATCTAGTTAAGATGATGCAGTGCAGCACTATAGAGTTGCAGGATGCAGCCTATACAGCACTACACCAAATGCTTTTTGGAAGCAGCGGAGTTCTCGTTTTGAACCAAATCCTTCAGATGGGTCTCATAGAGAGGATGGCTCAATCACTGGAAAGCAAATCCATGAAGACCAGGGAAGTGAATGTGCACTGTTTTCTGGATATTGTGGAGCTCGGAAACAAAGCCTGCATCGAGCAAATGTTTTCACTGCAAGTGGTGGAGAAGCTTGTGAAAATAGAAAAGGCTAGTGGGGGAACTAGTGAAAAACTGCTTGGATTCATAAAGGGAATTGATAAATGTAAGCATCTATCTATGGCAGAGCGTAGAGTGATGAAACAACAAGTGGTTAGGAAGATAAGGGCTTCCCTTAAAGGCCATAAATTTGAGTTTCAAATTTTGGGAGCTGTTGATGCTTGTGTATCTGAGGGCTCAAAAGTAGGTAGTAGCAGTAGAGGTAAACACAAAAGGGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

485

Amino Acids

53.93

Weight (kDa)

6.69

Isoelectric Point (pI)

47.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008875)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g30240 FvH4_6g30241
prunus_persica	Prupe.3G081300_v2.0.a1 Prupe.3G081300_v2.0.a1 Prupe.3G081300_v2.0.a1 Prupe.3G081300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0136481
rosa_laevigata	RLG00000019535
rosa_multiflora	Rmu_co8277351.1_g000001 Rmu_co8287839.1_g000001 Rmu_ssc0000040.1_g000001
rosa_roxburghii	Rroxscaffold_2G00108250
rosa_rugosa	Rorug02G0331000 Rorug02G0331100 Rorug02G0331200
rosa_samantha	Rh2AG381900 Rh2AG382000 Rh2BG388600 Rh2CG368300 Rh2DG405100 Rh2DG405200 Rh2DG405300
rosa_wichuraiana	Rw2G031220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	687
AciI	CCGC	1 cut(s)	1032
AclWI	GGATC	5 cut(s)	232, 480, 493, 568, 642
AcsI	RAATTY	3 cut(s)	278, 1364, 1377
AcuI	CTGAAG	2 cut(s)	296, 1043
AfaI	GTAC	2 cut(s)	693, 932
AfiI	CCNNNNNNNGG	4 cut(s)	295, 553, 900, 1063
AhlI	ACTAGT	1 cut(s)	1241
AjnI	CCWGG	1 cut(s)	1115
AjuI	GAANNNNNNNTTGG	2 cut(s)	1239, 1271
Alw21I	GWGCWC	2 cut(s)	1134, 1158
Alw26I	GTCTC	3 cut(s)	287, 771, 1073
Alw44I	GTGCAC	1 cut(s)	1130
AlwI	GGATC	5 cut(s)	232, 480, 493, 568, 642
AoxI	GGCC	2 cut(s)	544, 1357
ApaLI	GTGCAC	1 cut(s)	1130
ApeKI	GCWGC	5 cut(s)	661, 866, 969, 992, 1029
ApoI	RAATTY	3 cut(s)	278, 1364, 1377
AspA2I	CCTAGG	1 cut(s)	65
AspS9I	GGNCC	2 cut(s)	62, 545
AsuHPI	GGTGA	1 cut(s)	121
AsuNHI	GCTAGC	2 cut(s)	5, 886
AvaII	GGWCC	1 cut(s)	62
AvrII	CCTAGG	1 cut(s)	65
BaeGI	GKGCMC	1 cut(s)	1134
BamHI	GGATCC	1 cut(s)	485
BanII	GRGCYC	2 cut(s)	1158, 1415
BbsI	GAAGAC	2 cut(s)	530, 1118
Bbv12I	GWGCWC	2 cut(s)	1134, 1158
BbvI	GCAGC	5 cut(s)	648, 853, 981, 1004, 1041
BccI	CCATC	5 cut(s)	134, 178, 558, 1057, 1075
BciT130I	CCWGG	1 cut(s)	1117
BcoDI	GTCTC	3 cut(s)	287, 771, 1073
BcuI	ACTAGT	1 cut(s)	1241
BfaI	CTAG	7 cut(s)	6, 66, 603, 887, 950, 1230, 1242
BfmI	CTRYAG	3 cut(s)	72, 476, 975
BglII	AGATCT	2 cut(s)	676, 733
BisI	GCNGC	5 cut(s)	662, 867, 970, 993, 1030
BlnI	CCTAGG	1 cut(s)	65
BlsI	GCNGC	5 cut(s)	663, 868, 971, 994, 1031
Bme1390I	CCNGG	1 cut(s)	1117
Bme18I	GGWCC	1 cut(s)	62
BmgT120I	GGNCC	2 cut(s)	62, 545
BmiI	GGNNCC	3 cut(s)	63, 487, 547
BmrFI	CCNGG	1 cut(s)	1117
BmsI	GCATC	7 cut(s)	219, 780, 951, 979, 1182, 1297, 1384
BmtI	GCTAGC	2 cut(s)	9, 890
BpiI	GAAGAC	2 cut(s)	530, 1118
BplI	GAGNNNNNCTC	4 cut(s)	332, 364, 1069, 1101
BpmI	CTGGAG	1 cut(s)	635
BpuEI	CTTGAG	2 cut(s)	846, 947
BsaI	GGTCTC	1 cut(s)	1073
BsaJI	CCNNGG	3 cut(s)	65, 593, 1116
BsaXI	ACNNNNNCTCC	4 cut(s)	68, 98, 1026, 1056
Bsc4I	CCNNNNNNNGG	4 cut(s)	295, 553, 900, 1063
Bse1I	ACTGG	2 cut(s)	190, 1098
Bse3DI	GCAATG	2 cut(s)	371, 732
BseBI	CCWGG	1 cut(s)	1117
BseDI	CCNNGG	3 cut(s)	65, 593, 1116
BseGI	GGATG	3 cut(s)	170, 994, 1086
BseLI	CCNNNNNNNGG	4 cut(s)	295, 553, 900, 1063
BseMI	GCAATG	2 cut(s)	371, 732
BseMII	CTCAG	1 cut(s)	1398
BseNI	ACTGG	2 cut(s)	190, 1098
BseSI	GKGCMC	1 cut(s)	1134
BseXI	GCAGC	5 cut(s)	648, 853, 981, 1004, 1041
BseYI	CCCAGC	1 cut(s)	410
BsgI	GTGCAG	3 cut(s)	102, 210, 988
Bsh1285I	CGRYCG	1 cut(s)	300
BshFI	GGCC	2 cut(s)	546, 1359
BsiEI	CGRYCG	1 cut(s)	300
BsiHKAI	GWGCWC	2 cut(s)	1134, 1158
BslFI	GGGAC	1 cut(s)	780
BslI	CCNNNNNNNGG	4 cut(s)	295, 553, 900, 1063
BsmAI	GTCTC	3 cut(s)	287, 771, 1073
BsmBI	CGTCTC	1 cut(s)	287
BsmFI	GGGAC	1 cut(s)	780
BsmI	GAATGC	3 cut(s)	318, 441, 760
BsnI	GGCC	2 cut(s)	546, 1359
Bso31I	GGTCTC	1 cut(s)	1073
Bsp1286I	GDGCHC	3 cut(s)	1134, 1158, 1415
Bsp143I	GATC	9 cut(s)	81, 237, 393, 485, 560, 634, 676, 733, 946
Bsp19I	CCATGG	1 cut(s)	593
BspACI	CCGC	1 cut(s)	1032
BspANI	GGCC	2 cut(s)	546, 1359
BspCNI	CTCAG	1 cut(s)	1399
BspLI	GGNNCC	3 cut(s)	63, 487, 547
BspMAI	CTGCAG	1 cut(s)	76
BspOI	GCTAGC	2 cut(s)	9, 890
BspPI	GGATC	5 cut(s)	232, 480, 493, 568, 642
BspTNI	GGTCTC	1 cut(s)	1073
BsrDI	GCAATG	2 cut(s)	371, 732
BsrI	ACTGG	2 cut(s)	190, 1098
BssECI	CCNNGG	3 cut(s)	65, 593, 1116
BssMI	GATC	9 cut(s)	81, 237, 393, 485, 560, 634, 676, 733, 946
BssT1I	CCWWGG	2 cut(s)	65, 593
Bst2UI	CCWGG	1 cut(s)	1117
Bst4CI	ACNGT	4 cut(s)	136, 298, 701, 1136
Bst6I	CTCTTC	1 cut(s)	468
BstAPI	GCANNNNNTGC	2 cut(s)	272, 515
BstC8I	GCNNGC	8 cut(s)	7, 208, 273, 441, 600, 710, 888, 1171
BstDEI	CTNAG	3 cut(s)	214, 467, 1407
BstDSI	CCRYGG	1 cut(s)	593
BstF5I	GGATG	3 cut(s)	170, 994, 1086
BstKTI	GATC	9 cut(s)	84, 240, 396, 488, 563, 637, 679, 736, 949
BstMAI	GTCTC	3 cut(s)	287, 771, 1073
BstMBI	GATC	9 cut(s)	81, 237, 393, 485, 560, 634, 676, 733, 946
BstMCI	CGRYCG	1 cut(s)	300
BstMWI	GCNNNNNNNGC	5 cut(s)	116, 272, 515, 1001, 1394
BstNI	CCWGG	1 cut(s)	1117
BstSCI	CCNGG	1 cut(s)	1115
BstSFI	CTRYAG	3 cut(s)	72, 476, 975
BstSLI	GKGCMC	1 cut(s)	1134
BstV1I	GCAGC	5 cut(s)	648, 853, 981, 1004, 1041
BstV2I	GAAGAC	2 cut(s)	530, 1118
BstX2I	RGATCY	4 cut(s)	485, 560, 676, 733
BstXI	CCANNNNNNTGG	1 cut(s)	557
BstYI	RGATCY	4 cut(s)	485, 560, 676, 733
BsuRI	GGCC	2 cut(s)	546, 1359
BtgI	CCRYGG	1 cut(s)	593
BtsCI	GGATG	3 cut(s)	170, 994, 1086
BtsI	GCAGTG	2 cut(s)	971, 1190
BtsIMutI	CAGTG	7 cut(s)	87, 132, 706, 971, 1091, 1132, 1190
Cac8I	GCNNGC	8 cut(s)	7, 208, 273, 441, 600, 710, 888, 1171
Cfr13I	GGNCC	2 cut(s)	62, 545
Csp6I	GTAC	2 cut(s)	692, 931
CviAII	CATG	5 cut(s)	371, 506, 594, 781, 1108
CviQI	GTAC	2 cut(s)	692, 931
DdeI	CTNAG	3 cut(s)	214, 467, 1407
DpnI	GATC	9 cut(s)	83, 239, 395, 487, 562, 636, 678, 735, 948
DpnII	GATC	9 cut(s)	81, 237, 393, 485, 560, 634, 676, 733, 946
Eam1104I	CTCTTC	1 cut(s)	468
EarI	CTCTTC	1 cut(s)	468
Ecl136II	GAGCTC	1 cut(s)	1156
Eco130I	CCWWGG	2 cut(s)	65, 593
Eco24I	GRGCYC	2 cut(s)	1158, 1415
Eco31I	GGTCTC	1 cut(s)	1073
Eco47I	GGWCC	1 cut(s)	62
Eco53kI	GAGCTC	1 cut(s)	1156
Eco57I	CTGAAG	2 cut(s)	296, 1043
EcoICRI	GAGCTC	1 cut(s)	1156
EcoO109I	RGGNCCY	2 cut(s)	62, 545
EcoRII	CCWGG	1 cut(s)	1115
EcoT14I	CCWWGG	2 cut(s)	65, 593
EcoT38I	GRGCYC	2 cut(s)	1158, 1415
ErhI	CCWWGG	2 cut(s)	65, 593
Esp3I	CGTCTC	1 cut(s)	287
FaeI	CATG	5 cut(s)	374, 509, 597, 784, 1111
FaqI	GGGAC	1 cut(s)	780
FatI	CATG	5 cut(s)	370, 505, 593, 780, 1107
Fnu4HI	GCNGC	5 cut(s)	662, 867, 970, 993, 1030
FokI	GGATG	3 cut(s)	157, 1001, 1093
FriOI	GRGCYC	2 cut(s)	1158, 1415
Fsp4HI	GCNGC	5 cut(s)	662, 867, 970, 993, 1030
FspBI	CTAG	7 cut(s)	6, 66, 603, 887, 950, 1230, 1242
GluI	GCNGC	5 cut(s)	662, 867, 970, 993, 1030
GsaI	CCCAGC	1 cut(s)	414
GsuI	CTGGAG	1 cut(s)	635
HaeIII	GGCC	2 cut(s)	546, 1359
Hin1II	CATG	5 cut(s)	374, 509, 597, 784, 1111
HindIII	AAGCTT	2 cut(s)	269, 1208
HinfI	GANTC	5 cut(s)	92, 460, 471, 905, 1260
HphI	GGTGA	1 cut(s)	121
Hpy166II	GTNNAC	2 cut(s)	1132, 1442
Hpy188I	TCNGA	9 cut(s)	22, 315, 490, 776, 817, 841, 1062, 1160, 1408
Hpy188III	TCNNGA	4 cut(s)	566, 614, 926, 1142
Hpy8I	GTNNAC	2 cut(s)	1132, 1442
HpyAV	CCTTC	1 cut(s)	1067
HpyCH4III	ACNGT	4 cut(s)	136, 298, 701, 1136
HpyCH4IV	ACGT	1 cut(s)	829
HpyF10VI	GCNNNNNNNGC	5 cut(s)	116, 272, 515, 1001, 1394
HpyF3I	CTNAG	3 cut(s)	214, 467, 1407
HpySE526I	ACGT	1 cut(s)	829
Hsp92II	CATG	5 cut(s)	374, 509, 597, 784, 1111
Kzo9I	GATC	9 cut(s)	81, 237, 393, 485, 560, 634, 676, 733, 946
LmnI	GCTCC	2 cut(s)	1153, 1385
Lsp1109I	GCAGC	5 cut(s)	648, 853, 981, 1004, 1041
LweI	GCATC	7 cut(s)	219, 780, 951, 979, 1182, 1297, 1384
MaeI	CTAG	7 cut(s)	6, 66, 603, 887, 950, 1230, 1242
MaeII	ACGT	1 cut(s)	829
MaeIII	GTNAC	2 cut(s)	50, 149
MalI	GATC	9 cut(s)	83, 239, 395, 487, 562, 636, 678, 735, 948
MboI	GATC	9 cut(s)	81, 237, 393, 485, 560, 634, 676, 733, 946
MboII	GAAGA	6 cut(s)	41, 455, 535, 686, 1123, 1348
MflI	RGATCY	4 cut(s)	485, 560, 676, 733
MhlI	GDGCHC	3 cut(s)	1134, 1158, 1415
MluCI	AATT	9 cut(s)	160, 220, 278, 323, 416, 847, 1272, 1364, 1377
MlyI	GAGTC	2 cut(s)	454, 465
MmeI	TCCRAC	2 cut(s)	538, 612
MnlI	CCTC	7 cut(s)	536, 715, 809, 904, 1071, 1402, 1430
MseI	TTAA	4 cut(s)	419, 915, 954, 1353
MslI	CAYNNNNRTG	1 cut(s)	375
MspA1I	CMGCKG	2 cut(s)	661, 1032
MspR9I	CCNGG	1 cut(s)	1117
Mva1269I	GAATGC	3 cut(s)	318, 441, 760
MvaI	CCWGG	1 cut(s)	1117
MwoI	GCNNNNNNNGC	5 cut(s)	116, 272, 515, 1001, 1394
NcoI	CCATGG	1 cut(s)	593
NdeII	GATC	9 cut(s)	81, 237, 393, 485, 560, 634, 676, 733, 946
NheI	GCTAGC	2 cut(s)	5, 886
NlaIII	CATG	5 cut(s)	374, 509, 597, 784, 1111
NlaIV	GGNNCC	3 cut(s)	63, 487, 547
NmuCI	GTSAC	1 cut(s)	149
PctI	GAATGC	3 cut(s)	318, 441, 760
PfeI	GAWTC	3 cut(s)	92, 905, 1260
PflFI	GACNNNGTC	1 cut(s)	609
PkrI	GCNGC	5 cut(s)	663, 868, 971, 994, 1031
PleI	GAGTC	2 cut(s)	454, 465
PpsI	GAGTC	2 cut(s)	454, 465
PpuMI	RGGWCCY	1 cut(s)	62
PsiI	TTATAA	1 cut(s)	687
Psp124BI	GAGCTC	1 cut(s)	1158
Psp5II	RGGWCCY	1 cut(s)	62
Psp6I	CCWGG	1 cut(s)	1115
PspFI	CCCAGC	1 cut(s)	410
PspGI	CCWGG	1 cut(s)	1115
PspN4I	GGNNCC	3 cut(s)	63, 487, 547
PspPI	GGNCC	2 cut(s)	62, 545
PspPPI	RGGWCCY	1 cut(s)	62
PstI	CTGCAG	1 cut(s)	76
PsuI	RGATCY	4 cut(s)	485, 560, 676, 733
PsyI	GACNNNGTC	1 cut(s)	609
PvuII	CAGCTG	1 cut(s)	661
RsaI	GTAC	2 cut(s)	693, 932
RsaNI	GTAC	2 cut(s)	692, 931
RseI	CAYNNNNRTG	1 cut(s)	375
SacI	GAGCTC	1 cut(s)	1158
SaqAI	TTAA	4 cut(s)	419, 915, 954, 1353
SatI	GCNGC	5 cut(s)	662, 867, 970, 993, 1030
Sau3AI	GATC	9 cut(s)	81, 237, 393, 485, 560, 634, 676, 733, 946
Sau96I	GGNCC	2 cut(s)	62, 545
SchI	GAGTC	2 cut(s)	454, 465
ScrFI	CCNGG	1 cut(s)	1117
SduI	GDGCHC	3 cut(s)	1134, 1158, 1415
SfaNI	GCATC	7 cut(s)	219, 780, 951, 979, 1182, 1297, 1384
SfcI	CTRYAG	3 cut(s)	72, 476, 975
SinI	GGWCC	1 cut(s)	62
SmiMI	CAYNNNNRTG	1 cut(s)	375
SmlI	CTYRAG	2 cut(s)	861, 926
SmoI	CTYRAG	2 cut(s)	861, 926
SpeI	ACTAGT	1 cut(s)	1241
Sse9I	AATT	9 cut(s)	160, 220, 278, 323, 416, 847, 1272, 1364, 1377
SsiI	CCGC	1 cut(s)	1032
SspMI	CTAG	7 cut(s)	6, 66, 603, 887, 950, 1230, 1242
SstI	GAGCTC	1 cut(s)	1158
StyD4I	CCNGG	1 cut(s)	1115
StyI	CCWWGG	2 cut(s)	65, 593
TaaI	ACNGT	4 cut(s)	136, 298, 701, 1136
TaiI	ACGT	1 cut(s)	832
TaqI	TCGA	3 cut(s)	300, 637, 1176
TasI	AATT	9 cut(s)	160, 220, 278, 323, 416, 847, 1272, 1364, 1377
TfiI	GAWTC	3 cut(s)	92, 905, 1260
Tru1I	TTAA	4 cut(s)	419, 915, 954, 1353
Tru9I	TTAA	4 cut(s)	419, 915, 954, 1353
TscAI	CASTG	7 cut(s)	94, 139, 706, 971, 1098, 1139, 1197
TseFI	GTSAC	1 cut(s)	149
TseI	GCWGC	5 cut(s)	661, 866, 969, 992, 1029
Tsp45I	GTSAC	1 cut(s)	149
TspDTI	ATGAA	6 cut(s)	317, 419, 896, 1124, 1252, 1331
TspRI	CASTG	7 cut(s)	94, 139, 706, 971, 1098, 1139, 1197
Tth111I	GACNNNGTC	1 cut(s)	609
VneI	GTGCAC	1 cut(s)	1130
VpaK11BI	GGWCC	1 cut(s)	62
XapI	RAATTY	3 cut(s)	278, 1364, 1377
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1019
XmaJI	CCTAGG	1 cut(s)	65
XspI	CTAG	7 cut(s)	6, 66, 603, 887, 950, 1230, 1242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.