Rh2BG388600

NB-ARC domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0008875
Physical Location & Seq
Reverse (-)
55289829 .. 55295007
5179 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG388600.1

Sequence Viewer

Length: 3141 bp
ATGGATGCTTTGCAAGTCATTTCTTCTGCAACACAGATAGTTTCAAGCATGGTAGGTGCCATTGCTGCATTAGAGCAAGCATCTAGAAACTTAGATGAAGCTCCAAAGAGAATTCAAAGCCTAGAGGAATTTGTTTGTGATCTTGAGAACTTGATTCGACGACTAAAGCACAAGCATGTCAACAAACTTCATAATCCTCAGTTAGAACACCAAATCCAAAGCTTGAATTCCCTGATAGAACGTCTGCATCCAAACATCACCAAGGCCAGGAGAATGGTGTCAAAGAGTAAGATTAAGAACTTGGCTAAGGTAGTTTGGACTTCCATGGCTGGAGACCCACTGGGGAAGCTTGTGAACTCAATAAGGGATGACTTGAATTGGTGGCTTGAATCACAAAGATTGGTCCAGGATGTTGAGAAGACACTTGAGTCAACTGCAAAAGACACCCGCGTTCGACTGAAAATTAGGACCGAACAAGGCTACCCAGTTTCTACTAAATGCTACTTTGTCAGGAATTTACTGGAAAAGAATGGTTCTCAACCTGTCATTCTAATTGTTGGGTTATCTGGTATTGGGAAGTCATTTTTGGCTCGTCAAGTAGCCTCTGATCCCCCTGAGAAATTTATGGATGGTGCAGTTGAACTTGGCTTTGGCCAATGGTGCAGTAGAGCTGCTTGCAACAGAAGTATAGCTGAATACCAGAGGCGCTTGGCAAGAAAACTTTGTAAATTTCTGGTGCAGATTGGATTTTGGAAGAAGATCAGGGATGAATATAGTGGAGATCTAGAATATATATGTTGCTTGCTTCAAGAAGCCTTGTATGGGAAGAGCATCCTTATACTTCTTGATGATGTTTGGGAGCAGGACATAGTTGAGCGGTTTGCAAAGCTATATGATAATGATTGCAGGTACCTTGTAACAACAAGAAATGAAGCTGTCTATGAAATTACAGAAGCAGAGAAGGTGGAATTAAGCAAAGATGACGTAAAGGAGACAAGCATGGAAGTTCTTCTCTACCATAGCCTCCTTAGCAAAGAAGAGCTACCGCAGGTAGCAGAGAACTTACTTGAGCGGTGCGGTCACCATCCTTTGACAGTTGCTGTTATGGGCAAGGCTCTCAGAAAAGAAACAAGAGCTGATCAATGGGAAAAGGCCATCACCAACTTATCCACATTTGCTACATGTGCACCTGGTCCTGTATCATATGTCAATGAAAAAGAAGCTGAGAATGCTTTAACCATTTTTGGATCCTTTGAGTTCAGTCTAGATGCAATGCCTGGAGACTCTAGAGAGCTCTTCATAGCTTTGTCAGCTCTTGCATGGGCAGAACCTGTGCCAGAAGCTTGTGTGGAGGCTGTTTGGTCAGTTCTGGGGCAGGAGACCCTGTTCCCACTCATAGTCTGCAAGCTTGTAGAAGGCTCATTGCTGATGAAAATTGATACGGATCCCTTGTACTTGGTACATGACATGGTTGCTCTGTACCTTGACAGCAAGACAAACAATTCAGTCCAGATACTATTAAATGCATCCACAGCTGAAGAAGCAGCATTCATCTGCCCTTGGCTTCTTATATTTGGGAAAGAGAGAGTAAAAGATATTGCCGAAAAGAAAGTAGTGTCTTTCCTTGGTTCTTTTGAGGAAAAGCATGTGATTATCACCTTAAAGGCGACTGTCCAGGCTCTAATGTCTAGCAAGTCCATATCAGAACTTGAAGAAAGTAGAGCAAACTTTAGTAGCTTATTGGGTCCTAGGACTGCAGACCTGATCTCCACTGAATCACAGAGCTTGATTGCTGTGTCTGCACAAGCCATCACCACTGTATTTAGCAAGAGTGACTATTGCAATTATTTTCCATCCCTTGAATATACTGGTGCAGTCAGCAAGTTGGCTTGCATCTTAGAAAATTGTGATGACCCTGTGATCCAAACAGATATTTCAGTTGTTCTTGCAAAGCTTGCAGAATTTGGAAGCCAAGAGACGGTCGATAAGGTGCTTCAGAGCATTCAATTTCATCAGTTGGCAGAGTTGCTCTCTCCAAATAATGAGCAATGGCATGAAAGTGTGTTTTCAATACTGATCTCATTGATGAAAGCTGGGAAATTAAAAGCTGTGGAGAGAATGCTTGCTTTTGAGATTGATAAGACTCTTCTTAGACTCCTACAGAATGGATCCGAAGTAGCTCAACACCATGCAATAGTTGCATTGAAGACATTTTTTGAGTTGAGAGGCCCCCATCTGGTTGGATCTCTTGAACCCAAAAATATAAACCTTTTGCCATGGCAAGCTAGACATTGTTTGGAGAGATTTCTTTTGTTGGATCGAAGTGTTCCCCTTTTACCACAGCTGCAAACTTTTGAAGATCTTATTTATAAGGTACTACACAGTGATAGCAAGCTGGTATTGGAGGCAATGCAAGATCTAATACCAATCCTAGAGAATGCAGGAGAACCAAGCATCAGAGACATGATTTTAGAAAGTCCCCTCATCAAACAACTCTCTGAACTCTTACAACGTGGAAGCCCTGAACATAATTCAACGAAATCTCAAGCTGCCTTTCTATTGATGAAGCTAGCTTCCTCTGGTGGGGAATCCTGCATTAAGAAGTTTCTTGAGTACGATATTATACCCGATCTAGTTAAGATGATGCAGTGCAGCACTATAGAGTTGCAGGATGCAGCCTATACAGCACTACACCAAATGCTTTTTGGAAGCAGCGGAGTTCTCGTTTTGAACCAAATCCTCCAGATGGGTCTCATAGAGAGGATGGCTCAATCACTGGAAAGCAAATCAATGAAGACCAGGGAAGTGAATGTGCACTGTTTTCTGGATATTGTGGAGCTCGGAAACAAAGCCTGCATCGAGCAAATGTTTTCACTGCAAGTGGTGGAGAAGCTTGTGAAAATAGAAAAGGCTAGTGGGGGAACTAGTGAAAAACTGCTTGGATTCATAAAGGGAATTGATAAATGTAAGCATCTATCTATGGCAGAGCGTAGAGTGATGAAACAACAAGTGGTTAGGAAGATAAGAGCTTCCCTTAAAGGCCATAAATTTGAGTTTCAAATTTTGGGAGCTGTTGATGCTTGTGTATCTGAGGGCTCAAAAGTAGGTAGTAGCAGTAGAGGTAAACACAAAAGGGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

1046

Amino Acids

117.2

Weight (kDa)

6.22

Isoelectric Point (pI)

40.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 171 - 321 3.8e-14 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2370
AasI GACNNNNNNGTC 1 cut(s) 427
Acc36I ACCTGC 2 cut(s) 897, 1039
Acc65I GGTACC 1 cut(s) 909
AccB1I GGYRCC 2 cut(s) 56, 909
AccBSI CCGCTC 2 cut(s) 877, 1072
AccII CGCG 1 cut(s) 450
AciI CCGC 6 cut(s) 448, 877, 1046, 1072, 1077, 2715
AcoI YGGCCR 1 cut(s) 652
AcsI RAATTY 9 cut(s) 111, 128, 226, 514, 620, 728, 1961, 3047, 3060
AcuI CTGAAG 2 cut(s) 1557, 1979
AfaI GTAC 6 cut(s) 911, 1454, 1461, 1481, 2376, 2615
AfiI CCNNNNNNNGG 6 cut(s) 267, 822, 1978, 2236, 2583, 2746
AflIII ACRYGT 1 cut(s) 1181
AhlI ACTAGT 1 cut(s) 2924
AjnI CCWGG 6 cut(s) 266, 405, 1189, 1276, 1674, 2798
AjuI GAANNNNNNNTTGG 6 cut(s) 569, 601, 633, 665, 2922, 2954
AloI GAACNNNNNNTCC 4 cut(s) 198, 230, 1370, 1402
Alw21I GWGCWC 4 cut(s) 1189, 1296, 2817, 2841
Alw26I GTCTC 7 cut(s) 327, 986, 1275, 1373, 1970, 2454, 2756
Alw44I GTGCAC 2 cut(s) 1185, 2813
AlwNI CAGNNNCTG 2 cut(s) 1100, 1331
AoxI GGCC 5 cut(s) 264, 652, 1152, 2227, 3040
ApaLI GTGCAC 2 cut(s) 1185, 2813
ApeKI GCWGC 8 cut(s) 65, 671, 1544, 2344, 2549, 2652, 2675, 2712
ApoI RAATTY 9 cut(s) 111, 128, 226, 514, 620, 728, 1961, 3047, 3060
Asp700I GAANNNNTTC 1 cut(s) 1008
Asp718I GGTACC 1 cut(s) 909
AspA2I CCTAGG 1 cut(s) 1748
AspLEI GCGC 1 cut(s) 708
AspS9I GGNCC 5 cut(s) 403, 468, 1193, 1745, 2228
AsuHPI GGTGA 5 cut(s) 250, 1073, 1150, 1648, 1804
AsuNHI GCTAGC 1 cut(s) 2569
AvaII GGWCC 4 cut(s) 403, 468, 1193, 1745
AvrII CCTAGG 1 cut(s) 1748
BaeGI GKGCMC 2 cut(s) 1189, 2817
BalI TGGCCA 1 cut(s) 654
BamHI GGATCC 3 cut(s) 1247, 1444, 2168
BanI GGYRCC 2 cut(s) 56, 909
BanII GRGCYC 3 cut(s) 1296, 2841, 3098
BbsI GAAGAC 3 cut(s) 425, 2213, 2801
Bbv12I GWGCWC 4 cut(s) 1189, 1296, 2817, 2841
BbvI GCAGC 8 cut(s) 52, 658, 1556, 2331, 2536, 2664, 2687, 2724
BccI CCATC 8 cut(s) 623, 1092, 1163, 1817, 1861, 2241, 2740, 2758
BciT130I CCWGG 6 cut(s) 268, 407, 1191, 1278, 1676, 2800
BclI TGATCA 1 cut(s) 1138
BcoDI GTCTC 7 cut(s) 327, 986, 1275, 1373, 1970, 2454, 2756
BcuI ACTAGT 1 cut(s) 2924
BfmI CTRYAG 3 cut(s) 1755, 2159, 2658
BfoI RGCGCY 1 cut(s) 709
BfuAI ACCTGC 2 cut(s) 897, 1039
BglII AGATCT 3 cut(s) 781, 2359, 2416
BisI GCNGC 8 cut(s) 66, 672, 1545, 2345, 2550, 2653, 2676, 2713
BlnI CCTAGG 1 cut(s) 1748
BlsI GCNGC 8 cut(s) 67, 673, 1546, 2346, 2551, 2654, 2677, 2714
Bme1390I CCNGG 6 cut(s) 268, 407, 1191, 1278, 1676, 2800
Bme18I GGWCC 4 cut(s) 403, 468, 1193, 1745
BmgT120I GGNCC 5 cut(s) 403, 468, 1193, 1745, 2228
BmiI GGNNCC 7 cut(s) 58, 911, 1249, 1446, 1746, 2170, 2230
BmrFI CCNGG 6 cut(s) 268, 407, 1191, 1278, 1676, 2800
BmrI ACTGGG 2 cut(s) 350, 479
BmtI GCTAGC 1 cut(s) 2573
BmuI ACTGGG 2 cut(s) 350, 479
BpiI GAAGAC 3 cut(s) 425, 2213, 2801
BplI GAGNNNNNCTC 4 cut(s) 2015, 2047, 2752, 2784
BpmI CTGGAG 3 cut(s) 351, 1299, 2726
Bpu10I CCTNAGC 2 cut(s) 306, 1028
BpuEI CTTGAG 5 cut(s) 164, 446, 1088, 2529, 2630
BsaBI GATNNNNATC 1 cut(s) 1443
BsaI GGTCTC 3 cut(s) 327, 1373, 2756
BsaJI CCNNGG 7 cut(s) 261, 324, 1559, 1624, 1748, 2276, 2799
BsaXI ACNNNNNCTCC 6 cut(s) 1370, 1400, 1751, 1781, 2709, 2739
Bsc4I CCNNNNNNNGG 6 cut(s) 267, 822, 1978, 2236, 2583, 2746
Bse1I ACTGG 5 cut(s) 345, 485, 525, 1873, 2781
Bse3DI GCAATG 5 cut(s) 60, 1278, 1421, 2054, 2415
Bse8I GATNNNNATC 1 cut(s) 1443
BseBI CCWGG 6 cut(s) 268, 407, 1191, 1278, 1676, 2800
BseDI CCNNGG 7 cut(s) 261, 324, 1559, 1624, 1748, 2276, 2799
BseJI GATNNNNATC 1 cut(s) 1443
BseLI CCNNNNNNNGG 6 cut(s) 267, 822, 1978, 2236, 2583, 2746
BseMI GCAATG 5 cut(s) 60, 1278, 1421, 2054, 2415
BseMII CTCAG 5 cut(s) 212, 606, 1132, 1215, 3081
BseNI ACTGG 5 cut(s) 345, 485, 525, 1873, 2781
BseSI GKGCMC 2 cut(s) 1189, 2817
BseXI GCAGC 8 cut(s) 52, 658, 1556, 2331, 2536, 2664, 2687, 2724
BseYI CCCAGC 1 cut(s) 2093
BsgI GTGCAG 6 cut(s) 654, 682, 758, 1785, 1893, 2671
Bsh1236I CGCG 1 cut(s) 450
Bsh1285I CGRYCG 1 cut(s) 1983
BshFI GGCC 5 cut(s) 266, 654, 1154, 2229, 3042
BshNI GGYRCC 2 cut(s) 56, 909
BsiEI CGRYCG 1 cut(s) 1983
BsiHKAI GWGCWC 4 cut(s) 1189, 1296, 2817, 2841
BslFI GGGAC 1 cut(s) 2463
BslI CCNNNNNNNGG 6 cut(s) 267, 822, 1978, 2236, 2583, 2746
BsmAI GTCTC 7 cut(s) 327, 986, 1275, 1373, 1970, 2454, 2756
BsmBI CGTCTC 1 cut(s) 1970
BsmFI GGGAC 1 cut(s) 2463
BsmI GAATGC 5 cut(s) 1234, 1547, 2001, 2124, 2443
BsnI GGCC 5 cut(s) 266, 654, 1154, 2229, 3042
Bso31I GGTCTC 3 cut(s) 327, 1373, 2756
Bsp1286I GDGCHC 5 cut(s) 1189, 1296, 2817, 2841, 3098
Bsp19I CCATGG 2 cut(s) 324, 2276
BspACI CCGC 6 cut(s) 448, 877, 1046, 1072, 1077, 2715
BspANI GGCC 5 cut(s) 266, 654, 1154, 2229, 3042
BspCNI CTCAG 5 cut(s) 211, 607, 1131, 1216, 3082
BspFNI CGCG 1 cut(s) 450
BspLI GGNNCC 7 cut(s) 58, 911, 1249, 1446, 1746, 2170, 2230
BspMAI CTGCAG 1 cut(s) 1759
BspMI ACCTGC 2 cut(s) 897, 1039
BspOI GCTAGC 1 cut(s) 2573
BspQI GCTCTTC 3 cut(s) 821, 1032, 1301
BspT107I GGYRCC 2 cut(s) 56, 909
BspTNI GGTCTC 3 cut(s) 327, 1373, 2756
BsrBI CCGCTC 2 cut(s) 877, 1072
BsrDI GCAATG 5 cut(s) 60, 1278, 1421, 2054, 2415
BsrI ACTGG 5 cut(s) 345, 485, 525, 1873, 2781
BssECI CCNNGG 7 cut(s) 261, 324, 1559, 1624, 1748, 2276, 2799
BssT1I CCWWGG 6 cut(s) 261, 324, 1559, 1624, 1748, 2276
Bst2UI CCWGG 6 cut(s) 268, 407, 1191, 1278, 1676, 2800
Bst4CI ACNGT 6 cut(s) 1096, 1672, 1819, 1981, 2384, 2819
Bst6I CTCTTC 4 cut(s) 821, 1032, 1301, 2151
BstAPI GCANNNNNTGC 2 cut(s) 1955, 2198
BstDSI CCRYGG 2 cut(s) 324, 2276
BstEII GGTNACC 1 cut(s) 1079
BstFNI CGCG 1 cut(s) 450
BstH2I RGCGCY 1 cut(s) 709
BstHHI GCGC 1 cut(s) 708
BstMAI GTCTC 7 cut(s) 327, 986, 1275, 1373, 1970, 2454, 2756
BstMCI CGRYCG 1 cut(s) 1983
BstNI CCWGG 6 cut(s) 268, 407, 1191, 1278, 1676, 2800
BstNSI RCATGY 3 cut(s) 179, 1185, 1649
BstPI GGTNACC 1 cut(s) 1079
BstSCI CCNGG 6 cut(s) 266, 405, 1189, 1276, 1674, 2798
BstSFI CTRYAG 3 cut(s) 1755, 2159, 2658
BstSLI GKGCMC 2 cut(s) 1189, 2817
BstUI CGCG 1 cut(s) 450
BstV1I GCAGC 8 cut(s) 52, 658, 1556, 2331, 2536, 2664, 2687, 2724
BstV2I GAAGAC 3 cut(s) 425, 2213, 2801
BstX2I RGATCY 7 cut(s) 781, 1247, 1444, 2168, 2243, 2359, 2416
BstXI CCANNNNNNTGG 2 cut(s) 274, 2240
BstYI RGATCY 7 cut(s) 781, 1247, 1444, 2168, 2243, 2359, 2416
BsuRI GGCC 5 cut(s) 266, 654, 1154, 2229, 3042
BtgI CCRYGG 2 cut(s) 324, 2276
BtsI GCAGTG 2 cut(s) 2654, 2873
BtsIMutI CAGTG 8 cut(s) 338, 1770, 1815, 2389, 2654, 2774, 2815, 2873
BveI ACCTGC 2 cut(s) 897, 1039
CaiI CAGNNNCTG 2 cut(s) 1100, 1331
CfoI GCGC 1 cut(s) 708
Cfr13I GGNCC 5 cut(s) 403, 468, 1193, 1745, 2228
CsiI ACCWGGT 1 cut(s) 1189
Csp6I GTAC 6 cut(s) 910, 1453, 1460, 1480, 2375, 2614
CviQI GTAC 6 cut(s) 910, 1453, 1460, 1480, 2375, 2614
DrdI GACNNNNNNGTC 1 cut(s) 427
DseDI GACNNNNNNGTC 1 cut(s) 427
EaeI YGGCCR 1 cut(s) 652
Eam1104I CTCTTC 4 cut(s) 821, 1032, 1301, 2151
EarI CTCTTC 4 cut(s) 821, 1032, 1301, 2151
Ecl136II GAGCTC 2 cut(s) 1294, 2839
Eco130I CCWWGG 6 cut(s) 261, 324, 1559, 1624, 1748, 2276
Eco24I GRGCYC 3 cut(s) 1296, 2841, 3098
Eco31I GGTCTC 3 cut(s) 327, 1373, 2756
Eco47I GGWCC 4 cut(s) 403, 468, 1193, 1745
Eco53kI GAGCTC 2 cut(s) 1294, 2839
Eco57I CTGAAG 2 cut(s) 1557, 1979
Eco91I GGTNACC 1 cut(s) 1079
EcoICRI GAGCTC 2 cut(s) 1294, 2839
EcoO109I RGGNCCY 2 cut(s) 1745, 2228
EcoO65I GGTNACC 1 cut(s) 1079
EcoRI GAATTC 2 cut(s) 111, 226
EcoRII CCWGG 6 cut(s) 266, 405, 1189, 1276, 1674, 2798
EcoT14I CCWWGG 6 cut(s) 261, 324, 1559, 1624, 1748, 2276
EcoT22I ATGCAT 1 cut(s) 1528
EcoT38I GRGCYC 3 cut(s) 1296, 2841, 3098
ErhI CCWWGG 6 cut(s) 261, 324, 1559, 1624, 1748, 2276
Esp3I CGTCTC 1 cut(s) 1970
FaqI GGGAC 1 cut(s) 2463
FauI CCCGC 1 cut(s) 455
FauNDI CATATG 1 cut(s) 1204
FbaI TGATCA 1 cut(s) 1138
Fnu4HI GCNGC 8 cut(s) 66, 672, 1545, 2345, 2550, 2653, 2676, 2713
FriOI GRGCYC 3 cut(s) 1296, 2841, 3098
Fsp4HI GCNGC 8 cut(s) 66, 672, 1545, 2345, 2550, 2653, 2676, 2713
GlaI GCGC 1 cut(s) 707
GluI GCNGC 8 cut(s) 66, 672, 1545, 2345, 2550, 2653, 2676, 2713
GsaI CCCAGC 1 cut(s) 2097
GsuI CTGGAG 3 cut(s) 351, 1299, 2726
HaeII RGCGCY 1 cut(s) 709
HaeIII GGCC 5 cut(s) 266, 654, 1154, 2229, 3042
HhaI GCGC 1 cut(s) 708
Hin6I GCGC 1 cut(s) 706
HinP1I GCGC 1 cut(s) 706
HincII GTYRAC 2 cut(s) 181, 432
HindII GTYRAC 2 cut(s) 181, 432
HindIII AAGCTT 6 cut(s) 220, 347, 1341, 1406, 1952, 2891
HinfI GANTC 9 cut(s) 154, 389, 428, 1283, 1775, 2143, 2154, 2588, 2943
HphI GGTGA 5 cut(s) 250, 1073, 1150, 1648, 1804
Hpy166II GTNNAC 6 cut(s) 181, 355, 432, 1187, 2815, 3125
Hpy188I TCNGA 9 cut(s) 607, 1121, 1705, 1998, 2173, 2459, 2500, 2843, 3091
Hpy8I GTNNAC 6 cut(s) 181, 355, 432, 1187, 2815, 3125
Hpy99I CGWCG 1 cut(s) 162
HpyAV CCTTC 2 cut(s) 955, 1409
HpyCH4III ACNGT 6 cut(s) 1096, 1672, 1819, 1981, 2384, 2819
HpyCH4IV ACGT 3 cut(s) 241, 984, 2512
HpySE526I ACGT 3 cut(s) 241, 984, 2512
HspAI GCGC 1 cut(s) 706
KpnI GGTACC 1 cut(s) 913
Ksp22I TGATCA 1 cut(s) 1138
LguI GCTCTTC 3 cut(s) 821, 1032, 1301
LmnI GCTCC 4 cut(s) 106, 859, 2836, 3068
Lsp1109I GCAGC 8 cut(s) 52, 658, 1556, 2331, 2536, 2664, 2687, 2724
MabI ACCWGGT 1 cut(s) 1189
MaeII ACGT 3 cut(s) 241, 984, 2512
MaeIII GTNAC 3 cut(s) 916, 1079, 1832
MbiI CCGCTC 2 cut(s) 877, 1072
MflI RGATCY 7 cut(s) 781, 1247, 1444, 2168, 2243, 2359, 2416
MhlI GDGCHC 5 cut(s) 1189, 1296, 2817, 2841, 3098
MlsI TGGCCA 1 cut(s) 654
MluNI TGGCCA 1 cut(s) 654
MlyI GAGTC 4 cut(s) 437, 1277, 2137, 2148
MmeI TCCRAC 2 cut(s) 2221, 2295
Mox20I TGGCCA 1 cut(s) 654
Mph1103I ATGCAT 1 cut(s) 1528
MroXI GAANNNNTTC 1 cut(s) 1008
MscI TGGCCA 1 cut(s) 654
MseI TTAA 9 cut(s) 294, 971, 1235, 1520, 1661, 2102, 2598, 2637, 3036
MslI CAYNNNNRTG 2 cut(s) 174, 2058
Msp20I TGGCCA 1 cut(s) 654
MspA1I CMGCKG 3 cut(s) 1535, 2344, 2715
MspR9I CCNGG 6 cut(s) 268, 407, 1191, 1278, 1676, 2800
Mva1269I GAATGC 5 cut(s) 1234, 1547, 2001, 2124, 2443
MvaI CCWGG 6 cut(s) 268, 407, 1191, 1278, 1676, 2800
MvnI CGCG 1 cut(s) 450
NcoI CCATGG 2 cut(s) 324, 2276
NdeI CATATG 1 cut(s) 1204
NheI GCTAGC 1 cut(s) 2569
NlaIV GGNNCC 7 cut(s) 58, 911, 1249, 1446, 1746, 2170, 2230
NmuCI GTSAC 2 cut(s) 1079, 1832
NsiI ATGCAT 1 cut(s) 1528
NspI RCATGY 3 cut(s) 179, 1185, 1649
PciI ACATGT 1 cut(s) 1181
PciSI GCTCTTC 3 cut(s) 821, 1032, 1301
PctI GAATGC 5 cut(s) 1234, 1547, 2001, 2124, 2443
PdmI GAANNNNTTC 1 cut(s) 1008
PfeI GAWTC 5 cut(s) 154, 389, 1775, 2588, 2943
PfoI TCCNGGA 1 cut(s) 405
PkrI GCNGC 8 cut(s) 67, 673, 1546, 2346, 2551, 2654, 2677, 2714
PleI GAGTC 4 cut(s) 436, 1277, 2137, 2148
PpsI GAGTC 4 cut(s) 436, 1277, 2137, 2148
PpuMI RGGWCCY 1 cut(s) 1745
PscI ACATGT 1 cut(s) 1181
PsiI TTATAA 1 cut(s) 2370
Psp124BI GAGCTC 2 cut(s) 1296, 2841
Psp5II RGGWCCY 1 cut(s) 1745
Psp6I CCWGG 6 cut(s) 266, 405, 1189, 1276, 1674, 2798
PspEI GGTNACC 1 cut(s) 1079
PspFI CCCAGC 1 cut(s) 2093
PspGI CCWGG 6 cut(s) 266, 405, 1189, 1276, 1674, 2798
PspN4I GGNNCC 7 cut(s) 58, 911, 1249, 1446, 1746, 2170, 2230
PspPI GGNCC 5 cut(s) 403, 468, 1193, 1745, 2228
PspPPI RGGWCCY 1 cut(s) 1745
PstI CTGCAG 1 cut(s) 1759
PstNI CAGNNNCTG 2 cut(s) 1100, 1331
PsuI RGATCY 7 cut(s) 781, 1247, 1444, 2168, 2243, 2359, 2416
PvuII CAGCTG 2 cut(s) 1535, 2344
RsaI GTAC 6 cut(s) 911, 1454, 1461, 1481, 2376, 2615
RsaNI GTAC 6 cut(s) 910, 1453, 1460, 1480, 2375, 2614
RseI CAYNNNNRTG 2 cut(s) 174, 2058
SacI GAGCTC 2 cut(s) 1296, 2841
SapI GCTCTTC 3 cut(s) 821, 1032, 1301
SaqAI TTAA 9 cut(s) 294, 971, 1235, 1520, 1661, 2102, 2598, 2637, 3036
SatI GCNGC 8 cut(s) 66, 672, 1545, 2345, 2550, 2653, 2676, 2713
Sau96I GGNCC 5 cut(s) 403, 468, 1193, 1745, 2228
SchI GAGTC 4 cut(s) 437, 1277, 2137, 2148
ScrFI CCNGG 6 cut(s) 268, 407, 1191, 1278, 1676, 2800
SduI GDGCHC 5 cut(s) 1189, 1296, 2817, 2841, 3098
SexAI ACCWGGT 1 cut(s) 1189
SfcI CTRYAG 3 cut(s) 1755, 2159, 2658
SinI GGWCC 4 cut(s) 403, 468, 1193, 1745
SmiMI CAYNNNNRTG 2 cut(s) 174, 2058
SmlI CTYRAG 5 cut(s) 143, 425, 1067, 2544, 2609
SmoI CTYRAG 5 cut(s) 143, 425, 1067, 2544, 2609
SpeI ACTAGT 1 cut(s) 2924
SsiI CCGC 6 cut(s) 448, 877, 1046, 1072, 1077, 2715
SstI GAGCTC 2 cut(s) 1296, 2841
StyD4I CCNGG 6 cut(s) 266, 405, 1189, 1276, 1674, 2798
StyI CCWWGG 6 cut(s) 261, 324, 1559, 1624, 1748, 2276
TaaI ACNGT 6 cut(s) 1096, 1672, 1819, 1981, 2384, 2819
TaiI ACGT 3 cut(s) 244, 987, 2515
TaqI TCGA 5 cut(s) 157, 454, 1983, 2320, 2859
TaqII GACCGA 1 cut(s) 485
TatI WGTACW 1 cut(s) 1452
TfiI GAWTC 5 cut(s) 154, 389, 1775, 2588, 2943
Tru1I TTAA 9 cut(s) 294, 971, 1235, 1520, 1661, 2102, 2598, 2637, 3036
Tru9I TTAA 9 cut(s) 294, 971, 1235, 1520, 1661, 2102, 2598, 2637, 3036
TscAI CASTG 8 cut(s) 345, 1777, 1822, 2389, 2654, 2781, 2822, 2880
TseFI GTSAC 2 cut(s) 1079, 1832
TseI GCWGC 8 cut(s) 65, 671, 1544, 2344, 2549, 2652, 2675, 2712
Tsp45I GTSAC 2 cut(s) 1079, 1832
TspGWI ACGGA 1 cut(s) 1457
TspRI CASTG 8 cut(s) 345, 1777, 1822, 2389, 2654, 2781, 2822, 2880
VneI GTGCAC 2 cut(s) 1185, 2813
VpaK11BI GGWCC 4 cut(s) 403, 468, 1193, 1745
XapI RAATTY 9 cut(s) 111, 128, 226, 514, 620, 728, 1961, 3047, 3060
XbaI TCTAGA 4 cut(s) 83, 784, 1264, 1286
XceI RCATGY 3 cut(s) 179, 1185, 1649
XcmI CCANNNNNNNNNTGG 1 cut(s) 2702
XmaJI CCTAGG 1 cut(s) 1748
XmnI GAANNNNTTC 1 cut(s) 1008
Zsp2I ATGCAT 1 cut(s) 1528
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.