NB-ARC domain
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_6g30240 FvH4_6g30241 |
| prunus_persica | Prupe.3G081300_v2.0.a1 Prupe.3G081300_v2.0.a1 Prupe.3G081300_v2.0.a1 Prupe.3G081300_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr2g0136481 |
| rosa_laevigata | RLG00000019535 |
| rosa_multiflora | Rmu_co8277351.1_g000001 Rmu_co8287839.1_g000001 Rmu_ssc0000040.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00108250 |
| rosa_rugosa | Rorug02G0331000 Rorug02G0331100 Rorug02G0331200 |
| rosa_samantha | Rh2AG381900 Rh2AG382000 Rh2BG388600 Rh2CG368300 Rh2DG405100 Rh2DG405200 Rh2DG405300 |
| rosa_wichuraiana | Rw2G031220 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1636 |
| AatII | GACGTC | 1 cut(s) | 323 |
| Acc36I | ACCTGC | 1 cut(s) | 1636 |
| AccI | GTMKAC | 1 cut(s) | 3145 |
| AciI | CCGC | 4 cut(s) | 1046, 1755, 2583, 2815 |
| AclI | AACGTT | 1 cut(s) | 2268 |
| AclWI | GGATC | 6 cut(s) | 329, 602, 1439, 1915, 2163, 2176 |
| AcoI | YGGCCR | 3 cut(s) | 652, 1078, 2019 |
| AcuI | CTGAAG | 2 cut(s) | 1557, 2969 |
| AcyI | GRCGYC | 1 cut(s) | 320 |
| AfaI | GTAC | 6 cut(s) | 911, 1335, 1461, 1481, 2376, 2625 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 822, 1245, 2049, 2094, 2746, 2980 |
| AflII | CTTAAG | 1 cut(s) | 2741 |
| AflIII | ACRYGT | 2 cut(s) | 175, 1181 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 79 |
| AhlI | ACTAGT | 1 cut(s) | 349 |
| AjnI | CCWGG | 3 cut(s) | 266, 1276, 2449 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 569, 601, 633, 665, 2922, 2954 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1370, 1402 |
| Alw21I | GWGCWC | 4 cut(s) | 1189, 1995, 2722, 2841 |
| Alw26I | GTCTC | 7 cut(s) | 340, 774, 1275, 1373, 2110, 2250, 2454 |
| Alw44I | GTGCAC | 1 cut(s) | 1185 |
| AlwI | GGATC | 6 cut(s) | 329, 602, 1439, 1915, 2163, 2176 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 956, 1100 |
| Ama87I | CYCGRG | 1 cut(s) | 2799 |
| AoxI | GGCC | 8 cut(s) | 264, 652, 1078, 1152, 1665, 2019, 2227, 3040 |
| ApaLI | GTGCAC | 1 cut(s) | 1185 |
| ApeKI | GCWGC | 6 cut(s) | 671, 2509, 2652, 2675, 3111, 3114 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1486, 1518 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1008 |
| AspLEI | GCGC | 2 cut(s) | 708, 2991 |
| AspS9I | GGNCC | 6 cut(s) | 1193, 1248, 1745, 1752, 1912, 2228 |
| AsuC2I | CCSGG | 4 cut(s) | 1191, 2514, 2800, 2801 |
| AsuHPI | GGTGA | 6 cut(s) | 149, 398, 704, 1150, 1660, 1804 |
| AsuNHI | GCTAGC | 2 cut(s) | 1688, 2569 |
| AvaI | CYCGRG | 1 cut(s) | 2799 |
| AvaII | GGWCC | 5 cut(s) | 1193, 1248, 1745, 1752, 1912 |
| BaeGI | GKGCMC | 3 cut(s) | 1150, 1189, 2331 |
| BalI | TGGCCA | 3 cut(s) | 654, 1080, 2021 |
| BamHI | GGATCC | 1 cut(s) | 2168 |
| BanII | GRGCYC | 2 cut(s) | 2841, 3098 |
| BbsI | GAAGAC | 1 cut(s) | 2801 |
| Bbv12I | GWGCWC | 4 cut(s) | 1189, 1995, 2722, 2841 |
| BbvI | GCAGC | 6 cut(s) | 658, 2521, 2664, 2687, 3123, 3126 |
| BceAI | ACGGC | 1 cut(s) | 2997 |
| BciT130I | CCWGG | 3 cut(s) | 268, 1278, 2451 |
| BcnI | CCSGG | 4 cut(s) | 1191, 2514, 2800, 2801 |
| BcoDI | GTCTC | 7 cut(s) | 340, 774, 1275, 1373, 2110, 2250, 2454 |
| BcuI | ACTAGT | 1 cut(s) | 349 |
| BfmI | CTRYAG | 1 cut(s) | 1770 |
| BfoI | RGCGCY | 1 cut(s) | 709 |
| BfrI | CTTAAG | 1 cut(s) | 2741 |
| BfuAI | ACCTGC | 1 cut(s) | 1636 |
| BglII | AGATCT | 1 cut(s) | 2416 |
| BisI | GCNGC | 6 cut(s) | 672, 2510, 2653, 2676, 3112, 3115 |
| BlsI | GCNGC | 6 cut(s) | 673, 2511, 2654, 2677, 3113, 3116 |
| Bme1390I | CCNGG | 7 cut(s) | 268, 1191, 1278, 2451, 2514, 2800, 2801 |
| Bme18I | GGWCC | 5 cut(s) | 1193, 1248, 1745, 1752, 1912 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 79 |
| BmeT110I | CYCGRG | 1 cut(s) | 2799 |
| BmgT120I | GGNCC | 6 cut(s) | 1193, 1248, 1745, 1752, 1912, 2228 |
| BmiI | GGNNCC | 4 cut(s) | 1249, 1746, 1914, 2170 |
| BmrFI | CCNGG | 7 cut(s) | 268, 1191, 1278, 2451, 2514, 2800, 2801 |
| BmrI | ACTGGG | 1 cut(s) | 479 |
| BmsI | GCATC | 5 cut(s) | 1258, 2634, 2662, 2688, 3067 |
| BmtI | GCTAGC | 2 cut(s) | 1692, 2573 |
| BmuI | ACTGGG | 1 cut(s) | 479 |
| BpiI | GAAGAC | 1 cut(s) | 2801 |
| BpmI | CTGGAG | 6 cut(s) | 351, 597, 798, 1299, 2017, 2798 |
| Bpu10I | CCTNAGC | 2 cut(s) | 306, 1028 |
| BpuEI | CTTGAG | 2 cut(s) | 172, 362 |
| BpuMI | CCSGG | 4 cut(s) | 1191, 2514, 2800, 2801 |
| Bsa29I | ATCGAT | 1 cut(s) | 1437 |
| BsaBI | GATNNNNATC | 3 cut(s) | 1433, 1443, 2142 |
| BsaHI | GRCGYC | 1 cut(s) | 320 |
| BsaI | GGTCTC | 3 cut(s) | 774, 1373, 2250 |
| BsaJI | CCNNGG | 6 cut(s) | 1483, 1559, 1748, 2043, 2276, 2799 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1370, 1400 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 822, 1245, 2049, 2094, 2746, 2980 |
| Bse1I | ACTGG | 4 cut(s) | 485, 525, 1873, 2781 |
| Bse3DI | GCAATG | 5 cut(s) | 1278, 1299, 2415, 2647, 2655 |
| Bse8I | GATNNNNATC | 3 cut(s) | 1433, 1443, 2142 |
| BseBI | CCWGG | 3 cut(s) | 268, 1278, 2451 |
| BseCI | ATCGAT | 1 cut(s) | 1437 |
| BseDI | CCNNGG | 6 cut(s) | 1483, 1559, 1748, 2043, 2276, 2799 |
| BseGI | GGATG | 8 cut(s) | 10, 247, 373, 634, 772, 1853, 2677, 2769 |
| BseJI | GATNNNNATC | 3 cut(s) | 1433, 1443, 2142 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 822, 1245, 2049, 2094, 2746, 2980 |
| BseMI | GCAATG | 5 cut(s) | 1278, 1299, 2415, 2647, 2655 |
| BseMII | CTCAG | 4 cut(s) | 462, 1132, 1215, 3081 |
| BseNI | ACTGG | 4 cut(s) | 485, 525, 1873, 2781 |
| BseSI | GKGCMC | 3 cut(s) | 1150, 1189, 2331 |
| BseXI | GCAGC | 6 cut(s) | 658, 2521, 2664, 2687, 3123, 3126 |
| BsgI | GTGCAG | 6 cut(s) | 420, 654, 682, 758, 1785, 1893 |
| BshFI | GGCC | 8 cut(s) | 266, 654, 1080, 1154, 1667, 2021, 2229, 3042 |
| BshVI | ATCGAT | 1 cut(s) | 1437 |
| BsiHKAI | GWGCWC | 4 cut(s) | 1189, 1995, 2722, 2841 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2799 |
| BsiSI | CCGG | 3 cut(s) | 1191, 2514, 2800 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 822, 1245, 2049, 2094, 2746, 2980 |
| BsmAI | GTCTC | 7 cut(s) | 340, 774, 1275, 1373, 2110, 2250, 2454 |
| BsmI | GAATGC | 3 cut(s) | 831, 1234, 2001 |
| BsnI | GGCC | 8 cut(s) | 266, 654, 1080, 1154, 1667, 2021, 2229, 3042 |
| Bso31I | GGTCTC | 3 cut(s) | 774, 1373, 2250 |
| BsoBI | CYCGRG | 1 cut(s) | 2799 |
| Bsp1286I | GDGCHC | 7 cut(s) | 1150, 1189, 1995, 2331, 2722, 2841, 3098 |
| Bsp19I | CCATGG | 1 cut(s) | 2276 |
| BspACI | CCGC | 4 cut(s) | 1046, 1755, 2583, 2815 |
| BspANI | GGCC | 8 cut(s) | 266, 654, 1080, 1154, 1667, 2021, 2229, 3042 |
| BspCNI | CTCAG | 4 cut(s) | 461, 1131, 1216, 3082 |
| BspDI | ATCGAT | 1 cut(s) | 1437 |
| BspLI | GGNNCC | 4 cut(s) | 1249, 1746, 1914, 2170 |
| BspMI | ACCTGC | 1 cut(s) | 1636 |
| BspOI | GCTAGC | 2 cut(s) | 1692, 2573 |
| BspPI | GGATC | 6 cut(s) | 329, 602, 1439, 1915, 2163, 2176 |
| BspQI | GCTCTTC | 2 cut(s) | 821, 1301 |
| BspTI | CTTAAG | 1 cut(s) | 2741 |
| BspTNI | GGTCTC | 3 cut(s) | 774, 1373, 2250 |
| BsrDI | GCAATG | 5 cut(s) | 1278, 1299, 2415, 2647, 2655 |
| BsrI | ACTGG | 4 cut(s) | 485, 525, 1873, 2781 |
| BssECI | CCNNGG | 6 cut(s) | 1483, 1559, 1748, 2043, 2276, 2799 |
| BssNI | GRCGYC | 1 cut(s) | 320 |
| BssT1I | CCWWGG | 4 cut(s) | 1483, 1559, 1748, 2276 |
| Bst2UI | CCWGG | 3 cut(s) | 268, 1278, 2451 |
| Bst4CI | ACNGT | 5 cut(s) | 723, 1096, 1819, 1981, 2520 |
| Bst6I | CTCTTC | 3 cut(s) | 821, 1032, 1301 |
| BstACI | GRCGYC | 1 cut(s) | 320 |
| BstAFI | CTTAAG | 1 cut(s) | 2741 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1955 |
| BstDSI | CCRYGG | 1 cut(s) | 2276 |
| BstF5I | GGATG | 8 cut(s) | 10, 247, 373, 634, 772, 1853, 2677, 2769 |
| BstH2I | RGCGCY | 1 cut(s) | 709 |
| BstHHI | GCGC | 2 cut(s) | 708, 2991 |
| BstMAI | GTCTC | 7 cut(s) | 340, 774, 1275, 1373, 2110, 2250, 2454 |
| BstNI | CCWGG | 3 cut(s) | 268, 1278, 2451 |
| BstNSI | RCATGY | 5 cut(s) | 179, 1052, 1185, 2065, 2815 |
| BstSCI | CCNGG | 7 cut(s) | 266, 1189, 1276, 2449, 2512, 2798, 2799 |
| BstSFI | CTRYAG | 1 cut(s) | 1770 |
| BstSLI | GKGCMC | 3 cut(s) | 1150, 1189, 2331 |
| BstV1I | GCAGC | 6 cut(s) | 658, 2521, 2664, 2687, 3123, 3126 |
| BstV2I | GAAGAC | 1 cut(s) | 2801 |
| BstX2I | RGATCY | 4 cut(s) | 334, 1444, 2168, 2416 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 274 |
| BstYI | RGATCY | 4 cut(s) | 334, 1444, 2168, 2416 |
| Bsu15I | ATCGAT | 1 cut(s) | 1437 |
| BsuRI | GGCC | 8 cut(s) | 266, 654, 1080, 1154, 1667, 2021, 2229, 3042 |
| BsuTUI | ATCGAT | 1 cut(s) | 1437 |
| BtgI | CCRYGG | 1 cut(s) | 2276 |
| BtsCI | GGATG | 8 cut(s) | 10, 247, 373, 634, 772, 1853, 2677, 2769 |
| BtsI | GCAGTG | 2 cut(s) | 2716, 3124 |
| BtsIMutI | CAGTG | 4 cut(s) | 1815, 2716, 2774, 3124 |
| BveI | ACCTGC | 1 cut(s) | 1636 |
| CaiI | CAGNNNCTG | 2 cut(s) | 956, 1100 |
| CfoI | GCGC | 2 cut(s) | 708, 2991 |
| Cfr13I | GGNCC | 6 cut(s) | 1193, 1248, 1745, 1752, 1912, 2228 |
| Cfr9I | CCCGGG | 1 cut(s) | 2799 |
| ClaI | ATCGAT | 1 cut(s) | 1437 |
| CseI | GACGC | 1 cut(s) | 69 |
| Csp6I | GTAC | 6 cut(s) | 910, 1334, 1460, 1480, 2375, 2624 |
| CviQI | GTAC | 6 cut(s) | 910, 1334, 1460, 1480, 2375, 2624 |
| DriI | GACNNNNNGTC | 1 cut(s) | 79 |
| EaeI | YGGCCR | 3 cut(s) | 652, 1078, 2019 |
| Eam1104I | CTCTTC | 3 cut(s) | 821, 1032, 1301 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 79 |
| EarI | CTCTTC | 3 cut(s) | 821, 1032, 1301 |
| EciI | GGCGGA | 1 cut(s) | 2598 |
| Ecl136II | GAGCTC | 1 cut(s) | 2839 |
| Eco130I | CCWWGG | 4 cut(s) | 1483, 1559, 1748, 2276 |
| Eco147I | AGGCCT | 1 cut(s) | 1667 |
| Eco24I | GRGCYC | 2 cut(s) | 2841, 3098 |
| Eco31I | GGTCTC | 3 cut(s) | 774, 1373, 2250 |
| Eco32I | GATATC | 1 cut(s) | 868 |
| Eco47I | GGWCC | 5 cut(s) | 1193, 1248, 1745, 1752, 1912 |
| Eco53kI | GAGCTC | 1 cut(s) | 2839 |
| Eco57I | CTGAAG | 2 cut(s) | 1557, 2969 |
| Eco88I | CYCGRG | 1 cut(s) | 2799 |
| EcoICRI | GAGCTC | 1 cut(s) | 2839 |
| EcoO109I | RGGNCCY | 4 cut(s) | 1248, 1745, 1912, 2228 |
| EcoRI | GAATTC | 3 cut(s) | 111, 226, 1961 |
| EcoRII | CCWGG | 3 cut(s) | 266, 1276, 2449 |
| EcoRV | GATATC | 1 cut(s) | 868 |
| EcoT14I | CCWWGG | 4 cut(s) | 1483, 1559, 1748, 2276 |
| EcoT22I | ATGCAT | 1 cut(s) | 2649 |
| EcoT38I | GRGCYC | 2 cut(s) | 2841, 3098 |
| ErhI | CCWWGG | 4 cut(s) | 1483, 1559, 1748, 2276 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2293, 2325 |
| FauNDI | CATATG | 1 cut(s) | 1204 |
| FblI | GTMKAC | 1 cut(s) | 3145 |
| Fnu4HI | GCNGC | 6 cut(s) | 672, 2510, 2653, 2676, 3112, 3115 |
| FokI | GGATG | 8 cut(s) | 17, 234, 380, 641, 779, 1840, 2684, 2776 |
| FriOI | GRGCYC | 2 cut(s) | 2841, 3098 |
| Fsp4HI | GCNGC | 6 cut(s) | 672, 2510, 2653, 2676, 3112, 3115 |
| GlaI | GCGC | 2 cut(s) | 707, 2990 |
| GluI | GCNGC | 6 cut(s) | 672, 2510, 2653, 2676, 3112, 3115 |
| GsuI | CTGGAG | 6 cut(s) | 351, 597, 798, 1299, 2017, 2798 |
| HaeII | RGCGCY | 1 cut(s) | 709 |
| HaeIII | GGCC | 8 cut(s) | 266, 654, 1080, 1154, 1667, 2021, 2229, 3042 |
| HapII | CCGG | 3 cut(s) | 1191, 2514, 2800 |
| HgaI | GACGC | 1 cut(s) | 69 |
| HhaI | GCGC | 2 cut(s) | 708, 2991 |
| Hin1I | GRCGYC | 1 cut(s) | 320 |
| Hin6I | GCGC | 2 cut(s) | 706, 2989 |
| HinP1I | GCGC | 2 cut(s) | 706, 2989 |
| HincII | GTYRAC | 2 cut(s) | 181, 2085 |
| HindII | GTYRAC | 2 cut(s) | 181, 2085 |
| HindIII | AAGCTT | 8 cut(s) | 185, 220, 1060, 1341, 1406, 1726, 1952, 2891 |
| HpaI | GTTAAC | 1 cut(s) | 2085 |
| HpaII | CCGG | 3 cut(s) | 1191, 2514, 2800 |
| HphI | GGTGA | 6 cut(s) | 149, 398, 704, 1150, 1660, 1804 |
| HpyAV | CCTTC | 7 cut(s) | 1183, 1409, 1981, 2200, 2342, 2944, 3047 |
| HpyCH4III | ACNGT | 5 cut(s) | 723, 1096, 1819, 1981, 2520 |
| HpyCH4IV | ACGT | 2 cut(s) | 320, 2268 |
| HpySE526I | ACGT | 2 cut(s) | 320, 2268 |
| Hsp92I | GRCGYC | 1 cut(s) | 320 |
| HspAI | GCGC | 2 cut(s) | 706, 2989 |
| KspAI | GTTAAC | 1 cut(s) | 2085 |
| LguI | GCTCTTC | 2 cut(s) | 821, 1301 |
| LmnI | GCTCC | 7 cut(s) | 106, 117, 859, 1998, 2160, 2836, 3068 |
| Lsp1109I | GCAGC | 6 cut(s) | 658, 2521, 2664, 2687, 3123, 3126 |
| LweI | GCATC | 5 cut(s) | 1258, 2634, 2662, 2688, 3067 |
| MaeII | ACGT | 2 cut(s) | 320, 2268 |
| MaeIII | GTNAC | 4 cut(s) | 155, 916, 1041, 1234 |
| MfeI | CAATTG | 2 cut(s) | 1938, 2427 |
| MflI | RGATCY | 4 cut(s) | 334, 1444, 2168, 2416 |
| MhlI | GDGCHC | 7 cut(s) | 1150, 1189, 1995, 2331, 2722, 2841, 3098 |
| MlsI | TGGCCA | 3 cut(s) | 654, 1080, 2021 |
| MluNI | TGGCCA | 3 cut(s) | 654, 1080, 2021 |
| MlyI | GAGTC | 4 cut(s) | 163, 552, 1277, 1792 |
| MmeI | TCCRAC | 1 cut(s) | 2060 |
| Mox20I | TGGCCA | 3 cut(s) | 654, 1080, 2021 |
| Mph1103I | ATGCAT | 1 cut(s) | 2649 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1008 |
| MscI | TGGCCA | 3 cut(s) | 654, 1080, 2021 |
| MslI | CAYNNNNRTG | 1 cut(s) | 2075 |
| Msp20I | TGGCCA | 3 cut(s) | 654, 1080, 2021 |
| MspCI | CTTAAG | 1 cut(s) | 2741 |
| MspI | CCGG | 3 cut(s) | 1191, 2514, 2800 |
| MspR9I | CCNGG | 7 cut(s) | 268, 1191, 1278, 2451, 2514, 2800, 2801 |
| MunI | CAATTG | 2 cut(s) | 1938, 2427 |
| Mva1269I | GAATGC | 3 cut(s) | 831, 1234, 2001 |
| MvaI | CCWGG | 3 cut(s) | 268, 1278, 2451 |
| NciI | CCSGG | 4 cut(s) | 1191, 2514, 2800, 2801 |
| NcoI | CCATGG | 1 cut(s) | 2276 |
| NdeI | CATATG | 1 cut(s) | 1204 |
| NheI | GCTAGC | 2 cut(s) | 1688, 2569 |
| NlaIV | GGNNCC | 4 cut(s) | 1249, 1746, 1914, 2170 |
| NmeAIII | GCCGAG | 1 cut(s) | 2068 |
| NmuCI | GTSAC | 2 cut(s) | 155, 916 |
| NsiI | ATGCAT | 1 cut(s) | 2649 |
| NspI | RCATGY | 5 cut(s) | 179, 1052, 1185, 2065, 2815 |
| PaqCI | CACCTGC | 1 cut(s) | 1636 |
| PceI | AGGCCT | 1 cut(s) | 1667 |
| PciI | ACATGT | 2 cut(s) | 175, 1181 |
| PciSI | GCTCTTC | 2 cut(s) | 821, 1301 |
| PctI | GAATGC | 3 cut(s) | 831, 1234, 2001 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1008 |
| PfeI | GAWTC | 7 cut(s) | 389, 428, 1502, 1526, 1775, 2143, 2454 |
| PkrI | GCNGC | 6 cut(s) | 673, 2511, 2654, 2677, 3113, 3116 |
| PleI | GAGTC | 4 cut(s) | 162, 551, 1277, 1791 |
| PpsI | GAGTC | 4 cut(s) | 162, 551, 1277, 1791 |
| PpuMI | RGGWCCY | 3 cut(s) | 1248, 1745, 1912 |
| PscI | ACATGT | 2 cut(s) | 175, 1181 |
| Psp124BI | GAGCTC | 1 cut(s) | 2841 |
| Psp1406I | AACGTT | 1 cut(s) | 2268 |
| Psp5II | RGGWCCY | 3 cut(s) | 1248, 1745, 1912 |
| Psp6I | CCWGG | 3 cut(s) | 266, 1276, 2449 |
| PspGI | CCWGG | 3 cut(s) | 266, 1276, 2449 |
| PspN4I | GGNNCC | 4 cut(s) | 1249, 1746, 1914, 2170 |
| PspPI | GGNCC | 6 cut(s) | 1193, 1248, 1745, 1752, 1912, 2228 |
| PspPPI | RGGWCCY | 3 cut(s) | 1248, 1745, 1912 |
| PstNI | CAGNNNCTG | 2 cut(s) | 956, 1100 |
| PsuI | RGATCY | 4 cut(s) | 334, 1444, 2168, 2416 |
| RsaI | GTAC | 6 cut(s) | 911, 1335, 1461, 1481, 2376, 2625 |
| RsaNI | GTAC | 6 cut(s) | 910, 1334, 1460, 1480, 2375, 2624 |
| RseI | CAYNNNNRTG | 1 cut(s) | 2075 |
| SacI | GAGCTC | 1 cut(s) | 2841 |
| SapI | GCTCTTC | 2 cut(s) | 821, 1301 |
| SatI | GCNGC | 6 cut(s) | 672, 2510, 2653, 2676, 3112, 3115 |
| Sau96I | GGNCC | 6 cut(s) | 1193, 1248, 1745, 1752, 1912, 2228 |
| SchI | GAGTC | 4 cut(s) | 163, 552, 1277, 1792 |
| ScrFI | CCNGG | 7 cut(s) | 268, 1191, 1278, 2451, 2514, 2800, 2801 |
| SduI | GDGCHC | 7 cut(s) | 1150, 1189, 1995, 2331, 2722, 2841, 3098 |
| SfaNI | GCATC | 5 cut(s) | 1258, 2634, 2662, 2688, 3067 |
| SfcI | CTRYAG | 1 cut(s) | 1770 |
| SinI | GGWCC | 5 cut(s) | 1193, 1248, 1745, 1752, 1912 |
| SmaI | CCCGGG | 1 cut(s) | 2801 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 2075 |
| SmlI | CTYRAG | 3 cut(s) | 151, 341, 2741 |
| SmoI | CTYRAG | 3 cut(s) | 151, 341, 2741 |
| SpeI | ACTAGT | 1 cut(s) | 349 |
| SseBI | AGGCCT | 1 cut(s) | 1667 |
| SsiI | CCGC | 4 cut(s) | 1046, 1755, 2583, 2815 |
| SstI | GAGCTC | 1 cut(s) | 2841 |
| StuI | AGGCCT | 1 cut(s) | 1667 |
| StyD4I | CCNGG | 7 cut(s) | 266, 1189, 1276, 2449, 2512, 2798, 2799 |
| StyI | CCWWGG | 4 cut(s) | 1483, 1559, 1748, 2276 |
| TaaI | ACNGT | 5 cut(s) | 723, 1096, 1819, 1981, 2520 |
| TaiI | ACGT | 2 cut(s) | 323, 2271 |
| TfiI | GAWTC | 7 cut(s) | 389, 428, 1502, 1526, 1775, 2143, 2454 |
| TscAI | CASTG | 4 cut(s) | 1822, 2716, 2781, 3124 |
| TseFI | GTSAC | 2 cut(s) | 155, 916 |
| TseI | GCWGC | 6 cut(s) | 671, 2509, 2652, 2675, 3111, 3114 |
| Tsp45I | GTSAC | 2 cut(s) | 155, 916 |
| TspMI | CCCGGG | 1 cut(s) | 2799 |
| TspRI | CASTG | 4 cut(s) | 1822, 2716, 2781, 3124 |
| Vha464I | CTTAAG | 1 cut(s) | 2741 |
| VneI | GTGCAC | 1 cut(s) | 1185 |
| VpaK11BI | GGWCC | 5 cut(s) | 1193, 1248, 1745, 1752, 1912 |
| XbaI | TCTAGA | 3 cut(s) | 83, 1264, 2608 |
| XceI | RCATGY | 5 cut(s) | 179, 1052, 1185, 2065, 2815 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2702 |
| XmaI | CCCGGG | 1 cut(s) | 2799 |
| XmiI | GTMKAC | 1 cut(s) | 3145 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1008 |
| ZraI | GACGTC | 1 cut(s) | 321 |
| Zsp2I | ATGCAT | 1 cut(s) | 2649 |