FvH4_6g31270

Bifunctional aspartate aminotransferase and glutamate aspartate-prephenate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0007427
Physical Location & Seq
Reverse (-)
24412509 .. 24418568
6060 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g31270.t2

Sequence Viewer

Length: 1182 bp
ATGGGTTCCTGTGGAAAACTTGCAAAGAGGGCTGTGGATACTGATATGCCGGTCATGGTTCAGATACAACAATTGATCCGAGGTGCCAAAAATGCTGTGTCACTGGCGCAGGGAGTAGTTCATTGGCAACCACCCAAACAGGCATTGGATAAGGTGAAAGAACTTGTATGGGAGCCTTCAATTAGTCGTTATGGTGCTGATGAAGGTATACCTGAACTCAGGGAGGCATTGGTAAAAAAGTTGCGACAAGAAAACAAGTTGTGCAAATCTTCAGTTATGGTTACTGCAGGGGCAAATCAGGCATTTGTGAACCTTGTTCTTACATTGTGTGATGCTGGAGACTCCGTGGTCATGTTTGCACCGTACTACTTCAATGCCTACATGTCCTTCCAGATGACTGGAGTTACAAATATACTTGTAGGTCCTGGTCAGCCAAATACACTTTACCCAGATGCAGATTGGTTGGAGAAAACACTGTCAGAAACAAAACCAACCCCAAAACTTGTCACAGTTGTTAATCCTGGCAACCCATCTGGAACCTATATTCCAGAACCTCTTCTTAAGAGGATTTCAGATATTTGCAGAGAGGCTGGATCATGGCTTGTTGTGGACAATACATATGAGTATTTTATGTATGATGGATTGAAGCATTCTTGTGTGGAGGGAAATCACATTGTCAACATCTTTTCTTTCTCAAAAGCTTATGGGATGATGGGATGGCGAGTTGGCTATATAGCATACCCATCCGAAGCAGATGAGTTTGGCACTCAACTCCTCAAAGTTCAAGATAACATTCCCATCTGTGCTTCAATACTTTCGCAACATCTTGCCTTGTATTCACTAGAAATGGGATCCGAATGGGTTGTTGAACGAGTGAAAGGACTTGTCAAAAACAGAGAAATTGTTTTAGAAGCTCTCTCCCCACTCGGGGAAGAGTCTGTTAAAGGTGGAGAAGGTGCTATATACCTGTGGGCGAAGCTCCCGGACAAAGTCGATGACTCTGAATTTGTTCACTGGCTTGCTCACAGACATGGGGTGGTTGTGATTCCTGGAAGTGCATGCGGGTGCCCCGGAAATGTGAGAATCTCATTCGGTGGCTTGTTAGAGGATGACTGCAAAGCTGCTGCGGGGAGGCTGAGAAAAGGATTAGAAGAGTTGGTCAAGGATGGAATGGTCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000096 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006521 GO:0006555 GO:0006558 GO:0006568 GO:0006569 GO:0006570 GO:0006576 GO:0006586 GO:0006725 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008483 GO:0009056 GO:0009058 GO:0009063 GO:0009066 GO:0009072 GO:0009074 GO:0009308 GO:0009310 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009641 GO:0009698 GO:0009850 GO:0009851 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010252 GO:0010326 GO:0010364 GO:0010366 GO:0010565 GO:0010600 GO:0010817 GO:0016054 GO:0016740 GO:0016769 GO:0017144 GO:0019222 GO:0019439 GO:0019748 GO:0019752 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031335 GO:0031336 GO:0032350 GO:0032351 GO:0032353 GO:0033238 GO:0033239 GO:0034641 GO:0042402 GO:0042430 GO:0042436 GO:0042445 GO:0042446 GO:0042592 GO:0042762 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0045763 GO:0046218 GO:0046395 GO:0046483 GO:0046700 GO:0046885 GO:0048519 GO:0048523 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051175 GO:0062012 GO:0062014 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0090354 GO:0090356 GO:0090357 GO:1900908 GO:1900909 GO:1900911 GO:1900912 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606 GO:1901996 GO:1901997 GO:1902221
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aminotran_1_2

Protein Analysis

394

Amino Acids

43.17

Weight (kDa)

5.88

Isoelectric Point (pI)

32.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_1_2 PF00155 19 - 365 1.1e-51 Aminotransferase class I and II
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 347
AccB1I GGYRCC 2 cut(s) 83, 1065
AccI GTMKAC 1 cut(s) 208
AciI CCGC 2 cut(s) 1062, 1127
AclWI GGATC 4 cut(s) 70, 601, 846, 859
AcsI RAATTY 1 cut(s) 1004
AcuI CTGAAG 1 cut(s) 255
AfaI GTAC 1 cut(s) 365
AfiI CCNNNNNNNGG 2 cut(s) 927, 928
AflII CTTAAG 1 cut(s) 560
AflIII ACRYGT 1 cut(s) 381
AgsI TTSAA 6 cut(s) 180, 373, 646, 785, 810, 869
AjnI CCWGG 3 cut(s) 424, 520, 1048
AloI GAACNNNNNNTCC 2 cut(s) 529, 561
AluBI AGCT 4 cut(s) 701, 914, 979, 1121
AluI AGCT 4 cut(s) 701, 914, 979, 1121
Alw26I GTCTC 1 cut(s) 333
AlwI GGATC 4 cut(s) 70, 601, 846, 859
Ama87I CYCGRG 1 cut(s) 926
ApeKI GCWGC 2 cut(s) 1121, 1124
ApoI RAATTY 1 cut(s) 1004
ArsI GACNNNNNNTTYG 2 cut(s) 989, 1021
Asp700I GAANNNNTTC 2 cut(s) 555, 1008
AspLEI GCGC 1 cut(s) 109
AspS9I GGNCC 1 cut(s) 422
AsuC2I CCSGG 2 cut(s) 983, 1071
AsuHPI GGTGA 1 cut(s) 166
AvaI CYCGRG 1 cut(s) 926
AvaII GGWCC 1 cut(s) 422
BaeGI GKGCMC 1 cut(s) 1070
BamHI GGATCC 1 cut(s) 851
BanI GGYRCC 2 cut(s) 83, 1065
BbvI GCAGC 2 cut(s) 1108, 1111
BccI CCATC 7 cut(s) 538, 632, 706, 711, 751, 806, 1160
BciT130I CCWGG 3 cut(s) 426, 522, 1050
BciVI GTATCC 1 cut(s) 31
BcnI CCSGG 2 cut(s) 983, 1071
BcoDI GTCTC 1 cut(s) 333
BfaI CTAG 1 cut(s) 842
BfmI CTRYAG 1 cut(s) 285
BfrI CTTAAG 1 cut(s) 560
BfuI GTATCC 1 cut(s) 31
BisI GCNGC 2 cut(s) 1122, 1125
BlsI GCNGC 2 cut(s) 1123, 1126
Bme1390I CCNGG 5 cut(s) 426, 522, 983, 1050, 1071
Bme18I GGWCC 1 cut(s) 422
BmeT110I CYCGRG 1 cut(s) 926
BmgT120I GGNCC 1 cut(s) 422
BmiI GGNNCC 6 cut(s) 7, 85, 174, 538, 853, 1067
BmrFI CCNGG 5 cut(s) 426, 522, 983, 1050, 1071
BmsI GCATC 2 cut(s) 322, 442
BpmI CTGGAG 2 cut(s) 357, 420
BpuMI CCSGG 2 cut(s) 983, 1071
BsaJI CCNNGG 3 cut(s) 79, 345, 1069
BsaXI ACNNNNNCTCC 2 cut(s) 330, 360
Bsc4I CCNNNNNNNGG 2 cut(s) 927, 928
Bse118I RCCGGY 1 cut(s) 49
Bse1I ACTGG 3 cut(s) 108, 403, 1019
BseBI CCWGG 3 cut(s) 426, 522, 1050
BseDI CCNNGG 3 cut(s) 79, 345, 1069
BseGI GGATG 5 cut(s) 714, 722, 743, 1114, 1171
BseLI CCNNNNNNNGG 2 cut(s) 927, 928
BseMII CTCAG 2 cut(s) 232, 1127
BseNI ACTGG 3 cut(s) 108, 403, 1019
BseRI GAGGAG 1 cut(s) 764
BseSI GKGCMC 1 cut(s) 1070
BseXI GCAGC 2 cut(s) 1108, 1111
BshNI GGYRCC 2 cut(s) 83, 1065
BsiHKCI CYCGRG 1 cut(s) 926
BsiSI CCGG 3 cut(s) 50, 983, 1071
BslI CCNNNNNNNGG 2 cut(s) 927, 928
BsmAI GTCTC 1 cut(s) 333
BsmI GAATGC 1 cut(s) 649
BsoBI CYCGRG 1 cut(s) 926
Bsp1286I GDGCHC 1 cut(s) 1070
Bsp143I GATC 3 cut(s) 75, 593, 851
BspACI CCGC 2 cut(s) 1062, 1127
BspCNI CTCAG 2 cut(s) 231, 1128
BspLI GGNNCC 6 cut(s) 7, 85, 174, 538, 853, 1067
BspMAI CTGCAG 1 cut(s) 289
BspPI GGATC 4 cut(s) 70, 601, 846, 859
BspT107I GGYRCC 2 cut(s) 83, 1065
BspTI CTTAAG 1 cut(s) 560
BsrFI RCCGGY 1 cut(s) 49
BsrI ACTGG 3 cut(s) 108, 403, 1019
BssAI RCCGGY 1 cut(s) 49
BssECI CCNNGG 3 cut(s) 79, 345, 1069
BssMI GATC 3 cut(s) 75, 593, 851
BssNAI GTATAC 1 cut(s) 209
Bst1107I GTATAC 1 cut(s) 209
Bst2UI CCWGG 3 cut(s) 426, 522, 1050
Bst4CI ACNGT 3 cut(s) 363, 477, 511
Bst6I CTCTTC 3 cut(s) 561, 927, 1146
BstAFI CTTAAG 1 cut(s) 560
BstC8I GCNNGC 2 cut(s) 1020, 1060
BstDEI CTNAG 2 cut(s) 218, 1136
BstDSI CCRYGG 1 cut(s) 345
BstF5I GGATG 5 cut(s) 714, 722, 743, 1114, 1171
BstHHI GCGC 1 cut(s) 109
BstKTI GATC 3 cut(s) 78, 596, 854
BstMAI GTCTC 1 cut(s) 333
BstMBI GATC 3 cut(s) 75, 593, 851
BstMWI GCNNNNNNNGC 3 cut(s) 29, 92, 299
BstNI CCWGG 3 cut(s) 426, 522, 1050
BstNSI RCATGY 2 cut(s) 385, 1062
BstSCI CCNGG 5 cut(s) 424, 520, 981, 1048, 1069
BstSFI CTRYAG 1 cut(s) 285
BstSLI GKGCMC 1 cut(s) 1070
BstV1I GCAGC 2 cut(s) 1108, 1111
BstX2I RGATCY 1 cut(s) 851
BstXI CCANNNNNNTGG 1 cut(s) 398
BstYI RGATCY 1 cut(s) 851
BstZ17I GTATAC 1 cut(s) 209
BsuI GTATCC 1 cut(s) 31
BtgI CCRYGG 1 cut(s) 345
BtsCI GGATG 5 cut(s) 714, 722, 743, 1114, 1171
BtsIMutI CAGTG 3 cut(s) 101, 473, 1012
Cac8I GCNNGC 2 cut(s) 1020, 1060
CfoI GCGC 1 cut(s) 109
Cfr10I RCCGGY 1 cut(s) 49
Cfr13I GGNCC 1 cut(s) 422
Csp6I GTAC 1 cut(s) 364
CviAII CATG 6 cut(s) 55, 352, 382, 597, 1031, 1059
CviQI GTAC 1 cut(s) 364
DdeI CTNAG 2 cut(s) 218, 1136
DpnI GATC 3 cut(s) 77, 595, 853
DpnII GATC 3 cut(s) 75, 593, 851
DrdI GACNNNNNNGTC 1 cut(s) 347
DseDI GACNNNNNNGTC 1 cut(s) 347
Eam1104I CTCTTC 3 cut(s) 561, 927, 1146
EarI CTCTTC 3 cut(s) 561, 927, 1146
Eco47I GGWCC 1 cut(s) 422
Eco57I CTGAAG 1 cut(s) 255
Eco88I CYCGRG 1 cut(s) 926
EcoO109I RGGNCCY 1 cut(s) 422
EcoRII CCWGG 3 cut(s) 424, 520, 1048
FaeI CATG 6 cut(s) 58, 355, 385, 600, 1034, 1062
FatI CATG 6 cut(s) 54, 351, 381, 596, 1030, 1058
FauI CCCGC 2 cut(s) 1055, 1120
FauNDI CATATG 1 cut(s) 619
FblI GTMKAC 1 cut(s) 208
Fnu4HI GCNGC 2 cut(s) 1122, 1125
FokI GGATG 5 cut(s) 721, 729, 730, 1121, 1178
Fsp4HI GCNGC 2 cut(s) 1122, 1125
FspBI CTAG 1 cut(s) 842
GlaI GCGC 1 cut(s) 108
GluI GCNGC 2 cut(s) 1122, 1125
GsuI CTGGAG 2 cut(s) 357, 420
HapII CCGG 3 cut(s) 50, 983, 1071
HhaI GCGC 1 cut(s) 109
Hin1II CATG 6 cut(s) 58, 355, 385, 600, 1034, 1062
Hin6I GCGC 1 cut(s) 107
HinP1I GCGC 1 cut(s) 107
HincII GTYRAC 1 cut(s) 679
HindII GTYRAC 1 cut(s) 679
HindIII AAGCTT 1 cut(s) 699
HinfI GANTC 5 cut(s) 341, 935, 998, 1045, 1083
HpaII CCGG 3 cut(s) 50, 983, 1071
HphI GGTGA 1 cut(s) 166
Hpy166II GTNNAC 5 cut(s) 209, 310, 610, 679, 1012
Hpy188I TCNGA 7 cut(s) 63, 80, 481, 574, 748, 856, 1003
Hpy188III TCNNGA 4 cut(s) 391, 534, 548, 785
Hpy8I GTNNAC 5 cut(s) 209, 310, 610, 679, 1012
HpyAV CCTTC 4 cut(s) 186, 197, 397, 947
HpyCH4III ACNGT 3 cut(s) 363, 477, 511
HpyCH4V TGCA 8 cut(s) 23, 264, 287, 359, 455, 582, 1058, 1116
HpyF10VI GCNNNNNNNGC 3 cut(s) 29, 92, 299
HpyF3I CTNAG 2 cut(s) 218, 1136
Hsp92II CATG 6 cut(s) 58, 355, 385, 600, 1034, 1062
HspAI GCGC 1 cut(s) 107
Kzo9I GATC 3 cut(s) 75, 593, 851
LmnI GCTCC 2 cut(s) 172, 984
Lsp1109I GCAGC 2 cut(s) 1108, 1111
LweI GCATC 2 cut(s) 322, 442
MaeI CTAG 1 cut(s) 842
MaeIII GTNAC 4 cut(s) 99, 280, 403, 505
MalI GATC 3 cut(s) 77, 595, 853
MboI GATC 3 cut(s) 75, 593, 851
MboII GAAGA 4 cut(s) 261, 548, 944, 1163
MfeI CAATTG 1 cut(s) 71
MflI RGATCY 1 cut(s) 851
MhlI GDGCHC 1 cut(s) 1070
MluCI AATT 4 cut(s) 71, 180, 900, 1004
MlyI GAGTC 3 cut(s) 335, 944, 992
MmeI TCCRAC 1 cut(s) 444
MroXI GAANNNNTTC 2 cut(s) 555, 1008
MseI TTAA 3 cut(s) 516, 561, 942
MslI CAYNNNNRTG 3 cut(s) 654, 1029, 1063
MspCI CTTAAG 1 cut(s) 560
MspI CCGG 3 cut(s) 50, 983, 1071
MspR9I CCNGG 5 cut(s) 426, 522, 983, 1050, 1071
MunI CAATTG 1 cut(s) 71
Mva1269I GAATGC 1 cut(s) 649
MvaI CCWGG 3 cut(s) 426, 522, 1050
MwoI GCNNNNNNNGC 3 cut(s) 29, 92, 299
NciI CCSGG 2 cut(s) 983, 1071
NdeI CATATG 1 cut(s) 619
NdeII GATC 3 cut(s) 75, 593, 851
NlaIII CATG 6 cut(s) 58, 355, 385, 600, 1034, 1062
NlaIV GGNNCC 6 cut(s) 7, 85, 174, 538, 853, 1067
NmuCI GTSAC 2 cut(s) 99, 505
NspI RCATGY 2 cut(s) 385, 1062
PaeI GCATGC 1 cut(s) 1062
PciI ACATGT 1 cut(s) 381
PctI GAATGC 1 cut(s) 649
PdmI GAANNNNTTC 2 cut(s) 555, 1008
PfeI GAWTC 2 cut(s) 1045, 1083
PflFI GACNNNGTC 1 cut(s) 989
PfoI TCCNGGA 2 cut(s) 981, 1048
PkrI GCNGC 2 cut(s) 1123, 1126
PleI GAGTC 3 cut(s) 335, 943, 992
PpsI GAGTC 3 cut(s) 335, 943, 992
PpuMI RGGWCCY 1 cut(s) 422
PscI ACATGT 1 cut(s) 381
Psp5II RGGWCCY 1 cut(s) 422
Psp6I CCWGG 3 cut(s) 424, 520, 1048
PspGI CCWGG 3 cut(s) 424, 520, 1048
PspN4I GGNNCC 6 cut(s) 7, 85, 174, 538, 853, 1067
PspPI GGNCC 1 cut(s) 422
PspPPI RGGWCCY 1 cut(s) 422
PstI CTGCAG 1 cut(s) 289
PsuI RGATCY 1 cut(s) 851
PsyI GACNNNGTC 1 cut(s) 989
RsaI GTAC 1 cut(s) 365
RsaNI GTAC 1 cut(s) 364
RseI CAYNNNNRTG 3 cut(s) 654, 1029, 1063
SaqAI TTAA 3 cut(s) 516, 561, 942
SatI GCNGC 2 cut(s) 1122, 1125
Sau3AI GATC 3 cut(s) 75, 593, 851
Sau96I GGNCC 1 cut(s) 422
SchI GAGTC 3 cut(s) 335, 944, 992
ScrFI CCNGG 5 cut(s) 426, 522, 983, 1050, 1071
SduI GDGCHC 1 cut(s) 1070
SfaNI GCATC 2 cut(s) 322, 442
SfcI CTRYAG 1 cut(s) 285
SinI GGWCC 1 cut(s) 422
SmiMI CAYNNNNRTG 3 cut(s) 654, 1029, 1063
SmlI CTYRAG 1 cut(s) 560
SmoI CTYRAG 1 cut(s) 560
SphI GCATGC 1 cut(s) 1062
Sse9I AATT 4 cut(s) 71, 180, 900, 1004
SsiI CCGC 2 cut(s) 1062, 1127
SspMI CTAG 1 cut(s) 842
StyD4I CCNGG 5 cut(s) 424, 520, 981, 1048, 1069
TaaI ACNGT 3 cut(s) 363, 477, 511
TaqI TCGA 1 cut(s) 993
TasI AATT 4 cut(s) 71, 180, 900, 1004
TfiI GAWTC 2 cut(s) 1045, 1083
Tru1I TTAA 3 cut(s) 516, 561, 942
Tru9I TTAA 3 cut(s) 516, 561, 942
TscAI CASTG 3 cut(s) 108, 480, 1019
TseFI GTSAC 2 cut(s) 99, 505
TseI GCWGC 2 cut(s) 1121, 1124
Tsp45I GTSAC 2 cut(s) 99, 505
TspDTI ATGAA 2 cut(s) 110, 216
TspGWI ACGGA 1 cut(s) 334
TspRI CASTG 3 cut(s) 108, 480, 1019
Tth111I GACNNNGTC 1 cut(s) 989
Vha464I CTTAAG 1 cut(s) 560
VpaK11BI GGWCC 1 cut(s) 422
XapI RAATTY 1 cut(s) 1004
XceI RCATGY 2 cut(s) 385, 1062
XcmI CCANNNNNNNNNTGG 2 cut(s) 142, 456
XmiI GTMKAC 1 cut(s) 208
XmnI GAANNNNTTC 2 cut(s) 555, 1008
XspI CTAG 1 cut(s) 842
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.