Rorug02G0340400

Bifunctional aspartate aminotransferase and glutamate aspartate-prephenate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0007427
Physical Location & Seq
Forward (+)
42368397 .. 42369183
787 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0340400.1

Sequence Viewer

Length: 618 bp
ATGGATGAACTTTTCTTTTGGGTGAAGCTGCATAACATACCACTGATCTTAGAGGTAAAGAATACGATTGTCAATGTTGCTTCAATTGCTGGGAGGTTTTTGGAGATGGATGACAAACTGTTCAAGGCCACAGGCGACATTAGGGTTCATGTGGCGCATGATATTGCCAAACCCTTCTTCCTGACAAAAACCCTAAAACTAGCTCCGGGGGTTTTGTGCAATAAAATTTTATTGGCGGTGCATTTCGATTACAGGGCATTCAGACGCCCATTCTTCCCCACATTGCAAGAAATTTATTTGGCCCTAACCCCTCCTCCAAGCTACGCAAGCCAATGGTTATTCGTAGTGCAAACCTGCCGGTACCGGAGGAAGCTGACAAATAGCTTGCAAAATGCAAAACAATCGGCTTTGAAGCGAGGACGACCTGGTTCTCCTTTTGCCTCTCCCAAGAAGCTAAAACTCATGCTTGGGGATCTTGCAGTGGGCATTAATAGCTCATTGGCACCACCAAAGAAAGTGAAAATGCCTGCAGCTCCAGTCAAGCTTTCAGCCAAATCGTTGGGCCTAGTTGAGACACCGGGGGGGACTTCTTGTTCTTGCAGAAGTGATGCTGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000096 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006521 GO:0006555 GO:0006558 GO:0006568 GO:0006569 GO:0006570 GO:0006576 GO:0006586 GO:0006725 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008483 GO:0009056 GO:0009058 GO:0009063 GO:0009066 GO:0009072 GO:0009074 GO:0009308 GO:0009310 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009641 GO:0009698 GO:0009850 GO:0009851 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010252 GO:0010326 GO:0010364 GO:0010366 GO:0010565 GO:0010600 GO:0010817 GO:0016054 GO:0016740 GO:0016769 GO:0017144 GO:0019222 GO:0019439 GO:0019748 GO:0019752 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031335 GO:0031336 GO:0032350 GO:0032351 GO:0032353 GO:0033238 GO:0033239 GO:0034641 GO:0042402 GO:0042430 GO:0042436 GO:0042445 GO:0042446 GO:0042592 GO:0042762 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0045763 GO:0046218 GO:0046395 GO:0046483 GO:0046700 GO:0046885 GO:0048519 GO:0048523 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051175 GO:0062012 GO:0062014 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0090354 GO:0090356 GO:0090357 GO:1900908 GO:1900909 GO:1900911 GO:1900912 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606 GO:1901996 GO:1901997 GO:1902221
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aminotran_1_2

Protein Analysis

205

Amino Acids

22.69

Weight (kDa)

10.05

Isoelectric Point (pI)

49.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 362
Acc65I GGTACC 1 cut(s) 360
AccB1I GGYRCC 2 cut(s) 360, 502
AciI CCGC 1 cut(s) 236
AclWI GGATC 1 cut(s) 480
AcsI RAATTY 2 cut(s) 225, 291
AcyI GRCGYC 1 cut(s) 265
AfaI GTAC 1 cut(s) 362
AgsI TTSAA 3 cut(s) 84, 124, 412
AjnI CCWGG 1 cut(s) 424
AjuI GAANNNNNNNTTGG 2 cut(s) 161, 193
AloI GAACNNNNNNTCC 2 cut(s) 577, 609
AluBI AGCT 9 cut(s) 28, 203, 321, 373, 384, 454, 495, 533, 544
AluI AGCT 9 cut(s) 28, 203, 321, 373, 384, 454, 495, 533, 544
Alw26I GTCTC 1 cut(s) 566
AlwI GGATC 1 cut(s) 480
AoxI GGCC 3 cut(s) 126, 300, 562
ApeKI GCWGC 3 cut(s) 28, 530, 611
ApoI RAATTY 2 cut(s) 225, 291
AseI ATTAAT 1 cut(s) 489
Asp718I GGTACC 1 cut(s) 360
AspLEI GCGC 1 cut(s) 157
AspS9I GGNCC 2 cut(s) 301, 562
AsuC2I CCSGG 2 cut(s) 207, 579
AsuHPI GGTGA 1 cut(s) 34
BanI GGYRCC 2 cut(s) 360, 502
BbvI GCAGC 3 cut(s) 15, 542, 598
BccI CCATC 1 cut(s) 100
BcgI CGANNNNNNTGC 2 cut(s) 384, 418
BciT130I CCWGG 1 cut(s) 426
BcnI CCSGG 2 cut(s) 207, 579
BcoDI GTCTC 1 cut(s) 566
BfaI CTAG 3 cut(s) 200, 566, 616
BfmI CTRYAG 1 cut(s) 528
BfuAI ACCTGC 1 cut(s) 362
BisI GCNGC 3 cut(s) 29, 531, 612
BlsI GCNGC 3 cut(s) 30, 532, 613
Bme1390I CCNGG 3 cut(s) 207, 426, 579
BmgT120I GGNCC 2 cut(s) 301, 562
BmiI GGNNCC 2 cut(s) 362, 504
BmrFI CCNGG 3 cut(s) 207, 426, 579
BmsI GCATC 1 cut(s) 598
BpmI CTGGAG 1 cut(s) 519
BpuMI CCSGG 2 cut(s) 207, 579
BsaHI GRCGYC 1 cut(s) 265
BsaJI CCNNGG 2 cut(s) 206, 578
BsaWI WCCGGW 1 cut(s) 363
BsaXI ACNNNNNCTCC 2 cut(s) 298, 328
Bse118I RCCGGY 1 cut(s) 357
Bse1I ACTGG 1 cut(s) 536
Bse3DI GCAATG 1 cut(s) 281
BseBI CCWGG 1 cut(s) 426
BseDI CCNNGG 2 cut(s) 206, 578
BseGI GGATG 2 cut(s) 10, 115
BseMI GCAATG 1 cut(s) 281
BseNI ACTGG 1 cut(s) 536
BseRI GAGGAG 1 cut(s) 303
BseXI GCAGC 3 cut(s) 15, 542, 598
BseYI CCCAGC 1 cut(s) 89
BshFI GGCC 3 cut(s) 128, 302, 564
BshNI GGYRCC 2 cut(s) 360, 502
BsiSI CCGG 4 cut(s) 206, 358, 364, 578
BslFI GGGAC 1 cut(s) 598
BsmAI GTCTC 1 cut(s) 566
BsmFI GGGAC 1 cut(s) 598
BsmI GAATGC 1 cut(s) 257
BsnI GGCC 3 cut(s) 128, 302, 564
Bsp143I GATC 2 cut(s) 45, 472
BspACI CCGC 1 cut(s) 236
BspANI GGCC 3 cut(s) 128, 302, 564
BspLI GGNNCC 2 cut(s) 362, 504
BspMAI CTGCAG 1 cut(s) 532
BspMI ACCTGC 1 cut(s) 362
BspPI GGATC 1 cut(s) 480
BspT107I GGYRCC 2 cut(s) 360, 502
BsrDI GCAATG 1 cut(s) 281
BsrFI RCCGGY 1 cut(s) 357
BsrI ACTGG 1 cut(s) 536
BssAI RCCGGY 1 cut(s) 357
BssECI CCNNGG 2 cut(s) 206, 578
BssMI GATC 2 cut(s) 45, 472
BssNI GRCGYC 1 cut(s) 265
Bst2UI CCWGG 1 cut(s) 426
Bst4CI ACNGT 1 cut(s) 120
BstACI GRCGYC 1 cut(s) 265
BstC8I GCNNGC 3 cut(s) 328, 386, 528
BstDEI CTNAG 1 cut(s) 49
BstF5I GGATG 2 cut(s) 10, 115
BstHHI GCGC 1 cut(s) 157
BstKTI GATC 2 cut(s) 48, 475
BstMAI GTCTC 1 cut(s) 566
BstMBI GATC 2 cut(s) 45, 472
BstMWI GCNNNNNNNGC 3 cut(s) 86, 327, 492
BstNI CCWGG 1 cut(s) 426
BstSCI CCNGG 3 cut(s) 205, 424, 577
BstSFI CTRYAG 1 cut(s) 528
BstV1I GCAGC 3 cut(s) 15, 542, 598
BstX2I RGATCY 1 cut(s) 472
BstXI CCANNNNNNTGG 1 cut(s) 559
BstYI RGATCY 1 cut(s) 472
BsuRI GGCC 3 cut(s) 128, 302, 564
BtsCI GGATG 2 cut(s) 10, 115
BtsI GCAGTG 1 cut(s) 486
BtsIMutI CAGTG 2 cut(s) 41, 486
BveI ACCTGC 1 cut(s) 362
Cac8I GCNNGC 3 cut(s) 328, 386, 528
CfoI GCGC 1 cut(s) 157
Cfr10I RCCGGY 1 cut(s) 357
Cfr13I GGNCC 2 cut(s) 301, 562
CseI GACGC 1 cut(s) 273
CsiI ACCWGGT 1 cut(s) 424
Csp6I GTAC 1 cut(s) 361
CviAII CATG 3 cut(s) 149, 158, 463
CviQI GTAC 1 cut(s) 361
DdeI CTNAG 1 cut(s) 49
DpnI GATC 2 cut(s) 47, 474
DpnII GATC 2 cut(s) 45, 472
EcoRII CCWGG 1 cut(s) 424
FaeI CATG 3 cut(s) 152, 161, 466
FaiI YATR 5 cut(s) 33, 38, 150, 159, 464
FaqI GGGAC 1 cut(s) 598
FatI CATG 3 cut(s) 148, 157, 462
Fnu4HI GCNGC 3 cut(s) 29, 531, 612
FokI GGATG 2 cut(s) 17, 122
Fsp4HI GCNGC 3 cut(s) 29, 531, 612
FspBI CTAG 3 cut(s) 200, 566, 616
GlaI GCGC 1 cut(s) 156
GluI GCNGC 3 cut(s) 29, 531, 612
GsaI CCCAGC 1 cut(s) 93
GsuI CTGGAG 1 cut(s) 519
HaeIII GGCC 3 cut(s) 128, 302, 564
HapII CCGG 4 cut(s) 206, 358, 364, 578
HgaI GACGC 1 cut(s) 273
HhaI GCGC 1 cut(s) 157
Hin1I GRCGYC 1 cut(s) 265
Hin1II CATG 3 cut(s) 152, 161, 466
Hin6I GCGC 1 cut(s) 155
HinP1I GCGC 1 cut(s) 155
HindIII AAGCTT 1 cut(s) 542
HpaII CCGG 4 cut(s) 206, 358, 364, 578
HphI GGTGA 1 cut(s) 34
Hpy188I TCNGA 1 cut(s) 263
Hpy188III TCNNGA 1 cut(s) 181
HpyAV CCTTC 1 cut(s) 184
HpyCH4III ACNGT 1 cut(s) 120
HpyF10VI GCNNNNNNNGC 3 cut(s) 86, 327, 492
HpyF3I CTNAG 1 cut(s) 49
Hsp92I GRCGYC 1 cut(s) 265
Hsp92II CATG 3 cut(s) 152, 161, 466
HspAI GCGC 1 cut(s) 155
KpnI GGTACC 1 cut(s) 364
Kzo9I GATC 2 cut(s) 45, 472
LmnI GCTCC 2 cut(s) 208, 538
Lsp1109I GCAGC 3 cut(s) 15, 542, 598
LweI GCATC 1 cut(s) 598
MabI ACCWGGT 1 cut(s) 424
MaeI CTAG 3 cut(s) 200, 566, 616
MalI GATC 2 cut(s) 47, 474
MboI GATC 2 cut(s) 45, 472
MboII GAAGA 2 cut(s) 169, 265
MfeI CAATTG 1 cut(s) 84
MflI RGATCY 1 cut(s) 472
MluCI AATT 3 cut(s) 84, 225, 291
MnlI CCTC 7 cut(s) 46, 87, 321, 324, 360, 410, 451
MseI TTAA 1 cut(s) 489
MspI CCGG 4 cut(s) 206, 358, 364, 578
MspR9I CCNGG 3 cut(s) 207, 426, 579
MunI CAATTG 1 cut(s) 84
Mva1269I GAATGC 1 cut(s) 257
MvaI CCWGG 1 cut(s) 426
MwoI GCNNNNNNNGC 3 cut(s) 86, 327, 492
NciI CCSGG 2 cut(s) 207, 579
NdeII GATC 2 cut(s) 45, 472
NlaIII CATG 3 cut(s) 152, 161, 466
NlaIV GGNNCC 2 cut(s) 362, 504
PctI GAATGC 1 cut(s) 257
PkrI GCNGC 3 cut(s) 30, 532, 613
PshBI ATTAAT 1 cut(s) 489
Psp6I CCWGG 1 cut(s) 424
PspFI CCCAGC 1 cut(s) 89
PspGI CCWGG 1 cut(s) 424
PspN4I GGNNCC 2 cut(s) 362, 504
PspPI GGNCC 2 cut(s) 301, 562
PstI CTGCAG 1 cut(s) 532
PsuI RGATCY 1 cut(s) 472
RsaI GTAC 1 cut(s) 362
RsaNI GTAC 1 cut(s) 361
SaqAI TTAA 1 cut(s) 489
SatI GCNGC 3 cut(s) 29, 531, 612
Sau3AI GATC 2 cut(s) 45, 472
Sau96I GGNCC 2 cut(s) 301, 562
ScrFI CCNGG 3 cut(s) 207, 426, 579
SexAI ACCWGGT 1 cut(s) 424
SfaNI GCATC 1 cut(s) 598
SfcI CTRYAG 1 cut(s) 528
Sse9I AATT 3 cut(s) 84, 225, 291
SsiI CCGC 1 cut(s) 236
SspMI CTAG 3 cut(s) 200, 566, 616
StyD4I CCNGG 3 cut(s) 205, 424, 577
TaaI ACNGT 1 cut(s) 120
TaqI TCGA 1 cut(s) 246
TasI AATT 3 cut(s) 84, 225, 291
Tru1I TTAA 1 cut(s) 489
Tru9I TTAA 1 cut(s) 489
TscAI CASTG 2 cut(s) 48, 486
TseI GCWGC 3 cut(s) 28, 530, 611
TspDTI ATGAA 2 cut(s) 21, 137
TspRI CASTG 2 cut(s) 48, 486
VspI ATTAAT 1 cut(s) 489
XapI RAATTY 2 cut(s) 225, 291
XspI CTAG 3 cut(s) 200, 566, 616
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.