Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0007427

Physical Location & Seq

Genomic Coordinates Reverse (-)

42326525 .. 42329555

Gene Structure 3031 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0340100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGCCACTACCAAAGAGGCCGCGCCCAAACATGGTTCCCTCTTCTCCAGACTCTTCGGTTCTCACAAGGGAAGTAGGATCATCTAAAGTAACGGTAGACCCTGTACTACAAGGATGTGGGTATTCAAGGGTCTTGCAAGGTCAAGAATTCTCGACCTTGCGAGGCAATTTTGTGGAGAGTGAGTCTGATACAGCTGAAAAGTCTACTGCATGGCCAGCTTCGGTTGATGATGAGAGGATTGATGCAGTGTCTGGTTCAAGAAGATTTGGTTCCAGTGCAGATAACTGGATGCCCTCAGGGAGACATGAGCCAACCTACACAGATTTGCTATCAGGCTTTGGGACTAATGGTGACGCGTCACATGGTATCTGTCAGCCCTTTGTTGATCAAGCAGTAGCATCTGCTAATTCAATGAGAAAGCATTCACTGGATCAGGAAGGCAAGTTTAACTTGAATTCATGGTCCATGTTACCCTCATCGCTGTCACTTAGTTTGGACTCTAATAAGAAGAGAACTGGACTGAATAAATCAGCTCGTCATAACCAAGCACTTACCTTGGAGTCTGACCAGAAGTTGGAAAAGTCAAGGGGACCAAAATCAGTGGATAATTTATTAGCTGTTAATGAGTCGGATAAACAAACTTCTCAGCAGCATGCCAGAGATGTTCAGGGTAAAGCACAAGGCTCTTCAACTAGGAGTTGCACAAAGCCTAAGGTCTATGACTTTAGTGCAAATGAGGTTGACATCGATAACGAAACTGAAAGCGAAGAAGAATGGATGATTCCAACTTCCTATATTAACATTAGATTTGTGTTCTTTCCAATTTTGGACCTGAAACTGTTGAGGATGCTAGCTAATGAAGGTGCTGCAGTGTTGTGTTCCTTGCAATCTCTGACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006521 GO:0006555 GO:0006558 GO:0006568 GO:0006569 GO:0006570 GO:0006576 GO:0006586 GO:0006725 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008483 GO:0009056 GO:0009058 GO:0009063 GO:0009066 GO:0009072 GO:0009074 GO:0009308 GO:0009310 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009641 GO:0009698 GO:0009850 GO:0009851 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010252 GO:0010326 GO:0010364 GO:0010366 GO:0010565 GO:0010600 GO:0010817 GO:0016054 GO:0016740 GO:0016769 GO:0017144 GO:0019222 GO:0019439 GO:0019748 GO:0019752 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031335 GO:0031336 GO:0032350 GO:0032351 GO:0032353 GO:0033238 GO:0033239 GO:0034641 GO:0042402 GO:0042430 GO:0042436 GO:0042445 GO:0042446 GO:0042592 GO:0042762 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0045763 GO:0046218 GO:0046395 GO:0046483 GO:0046700 GO:0046885 GO:0048519 GO:0048523 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051175 GO:0062012 GO:0062014 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0090354 GO:0090356 GO:0090357 GO:1900908 GO:1900909 GO:1900911 GO:1900912 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606 GO:1901996 GO:1901997 GO:1902221

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

299

Amino Acids

32.81

Weight (kDa)

5.64

Isoelectric Point (pI)

49.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007427)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80360 AT1G80360 AT1G80360 AT1G80360
fragaria_vesca	FvH4_6g31270 FvH4_6g31270
malus_domestica	MD09G1216600.v1.1 MD17G1198700.v1.1
prunus_persica	Prupe.3G075300_v2.0.a1 Prupe.3G075300_v2.0.a1
pyrus_communis	pycom17g20340
rosa_chinensis	RchiOBHm_Chr2g0137261
rosa_laevigata	RLG00000019645
rosa_multiflora	Rmu_sc0000894.1_g000009
rosa_roxburghii	Rroxscaffold_2G00107250
rosa_rugosa	Rorug02G0340100 Rorug02G0340200 Rorug02G0340200 Rorug02G0340200 Rorug02G0340200 Rorug02G0340300 Rorug02G0340400
rosa_samantha	Rh2AG388800 Rh2BG396600
rosa_wichuraiana	Rw2G031860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	574
AccI	GTMKAC	2 cut(s)	96, 203
AccII	CGCG	2 cut(s)	22, 356
AciI	CCGC	1 cut(s)	20
AclWI	GGATC	2 cut(s)	85, 438
AcoI	YGGCCR	1 cut(s)	212
AcsI	RAATTY	2 cut(s)	146, 454
AfaI	GTAC	1 cut(s)	105
AfiI	CCNNNNNNNGG	2 cut(s)	31, 574
AflIII	ACRYGT	1 cut(s)	354
AgsI	TTSAA	5 cut(s)	126, 258, 411, 454, 690
AluBI	AGCT	5 cut(s)	194, 218, 533, 617, 854
AluI	AGCT	5 cut(s)	194, 218, 533, 617, 854
Alw26I	GTCTC	1 cut(s)	295
AlwI	GGATC	2 cut(s)	85, 438
AlwNI	CAGNNNCTG	1 cut(s)	251
AoxI	GGCC	2 cut(s)	17, 212
ApeKI	GCWGC	2 cut(s)	649, 866
ApoI	RAATTY	2 cut(s)	146, 454
Asp700I	GAANNNNTTC	1 cut(s)	421
AspLEI	GCGC	1 cut(s)	24
AspS9I	GGNCC	3 cut(s)	462, 590, 829
AsuHPI	GGTGA	1 cut(s)	362
AsuNHI	GCTAGC	1 cut(s)	850
AvaII	GGWCC	3 cut(s)	462, 590, 829
AxyI	CCTNAGG	2 cut(s)	295, 711
BalI	TGGCCA	1 cut(s)	214
BbvI	GCAGC	2 cut(s)	661, 853
BclI	TGATCA	1 cut(s)	385
BcoDI	GTCTC	1 cut(s)	295
BfaI	CTAG	2 cut(s)	693, 851
BfmI	CTRYAG	1 cut(s)	867
BisI	GCNGC	3 cut(s)	20, 650, 867
BlsI	GCNGC	3 cut(s)	21, 651, 868
Bme18I	GGWCC	3 cut(s)	462, 590, 829
BmgT120I	GGNCC	3 cut(s)	462, 590, 829
BmiI	GGNNCC	3 cut(s)	36, 271, 591
BmsI	GCATC	4 cut(s)	232, 279, 407, 837
BmtI	GCTAGC	1 cut(s)	854
BpmI	CTGGAG	1 cut(s)	30
Bsa29I	ATCGAT	1 cut(s)	747
BsaJI	CCNNGG	1 cut(s)	555
BsaXI	ACNNNNNCTCC	2 cut(s)	167, 197
Bsc4I	CCNNNNNNNGG	2 cut(s)	31, 574
Bse1I	ACTGG	4 cut(s)	273, 290, 432, 520
Bse21I	CCTNAGG	2 cut(s)	295, 711
BseCI	ATCGAT	1 cut(s)	747
BseDI	CCNNGG	1 cut(s)	555
BseGI	GGATG	4 cut(s)	119, 294, 783, 852
BseLI	CCNNNNNNNGG	2 cut(s)	31, 574
BseMII	CTCAG	2 cut(s)	309, 659
BseNI	ACTGG	4 cut(s)	273, 290, 432, 520
BseXI	GCAGC	2 cut(s)	661, 853
BsgI	GTGCAG	1 cut(s)	297
Bsh1236I	CGCG	2 cut(s)	22, 356
BshFI	GGCC	2 cut(s)	19, 214
BshVI	ATCGAT	1 cut(s)	747
BslFI	GGGAC	2 cut(s)	355, 603
BslI	CCNNNNNNNGG	2 cut(s)	31, 574
BsmAI	GTCTC	1 cut(s)	295
BsmFI	GGGAC	2 cut(s)	355, 603
BsmI	GAATGC	1 cut(s)	421
BsnI	GGCC	2 cut(s)	19, 214
Bsp143I	GATC	3 cut(s)	77, 385, 430
BspACI	CCGC	1 cut(s)	20
BspANI	GGCC	2 cut(s)	19, 214
BspCNI	CTCAG	2 cut(s)	308, 658
BspDI	ATCGAT	1 cut(s)	747
BspFNI	CGCG	2 cut(s)	22, 356
BspLI	GGNNCC	3 cut(s)	36, 271, 591
BspMAI	CTGCAG	1 cut(s)	871
BspOI	GCTAGC	1 cut(s)	854
BspPI	GGATC	2 cut(s)	85, 438
BspQI	GCTCTTC	1 cut(s)	691
BsrI	ACTGG	4 cut(s)	273, 290, 432, 520
BssECI	CCNNGG	1 cut(s)	555
BssMI	GATC	3 cut(s)	77, 385, 430
BssT1I	CCWWGG	1 cut(s)	555
Bst4CI	ACNGT	2 cut(s)	94, 840
Bst6I	CTCTTC	4 cut(s)	46, 58, 503, 691
BstC8I	GCNNGC	3 cut(s)	216, 654, 852
BstDEI	CTNAG	4 cut(s)	295, 488, 645, 711
BstF5I	GGATG	4 cut(s)	119, 294, 783, 852
BstFNI	CGCG	2 cut(s)	22, 356
BstHHI	GCGC	1 cut(s)	24
BstKTI	GATC	3 cut(s)	80, 388, 433
BstMAI	GTCTC	1 cut(s)	295
BstMBI	GATC	3 cut(s)	77, 385, 430
BstMWI	GCNNNNNNNGC	1 cut(s)	215
BstNSI	RCATGY	1 cut(s)	656
BstSFI	CTRYAG	1 cut(s)	867
BstUI	CGCG	2 cut(s)	22, 356
BstV1I	GCAGC	2 cut(s)	661, 853
Bsu15I	ATCGAT	1 cut(s)	747
Bsu36I	CCTNAGG	2 cut(s)	295, 711
BsuRI	GGCC	2 cut(s)	19, 214
BsuTUI	ATCGAT	1 cut(s)	747
BtgZI	GCGATG	1 cut(s)	462
BtsCI	GGATG	4 cut(s)	119, 294, 783, 852
BtsI	GCAGTG	2 cut(s)	252, 876
BtsIMutI	CAGTG	5 cut(s)	252, 280, 425, 606, 876
Cac8I	GCNNGC	3 cut(s)	216, 654, 852
CaiI	CAGNNNCTG	1 cut(s)	251
CfoI	GCGC	1 cut(s)	24
Cfr13I	GGNCC	3 cut(s)	462, 590, 829
ClaI	ATCGAT	1 cut(s)	747
CseI	GACGC	2 cut(s)	345, 362
Csp6I	GTAC	1 cut(s)	104
CspCI	CAANNNNNGTGG	2 cut(s)	582, 617
CviAII	CATG	7 cut(s)	31, 210, 305, 362, 459, 466, 653
CviQI	GTAC	1 cut(s)	104
DdeI	CTNAG	4 cut(s)	295, 488, 645, 711
DpnI	GATC	3 cut(s)	79, 387, 432
DpnII	GATC	3 cut(s)	77, 385, 430
EaeI	YGGCCR	1 cut(s)	212
Eam1104I	CTCTTC	4 cut(s)	46, 58, 503, 691
EarI	CTCTTC	4 cut(s)	46, 58, 503, 691
Eco130I	CCWWGG	1 cut(s)	555
Eco47I	GGWCC	3 cut(s)	462, 590, 829
Eco81I	CCTNAGG	2 cut(s)	295, 711
EcoRI	GAATTC	2 cut(s)	146, 454
EcoT14I	CCWWGG	1 cut(s)	555
ErhI	CCWWGG	1 cut(s)	555
FaeI	CATG	7 cut(s)	34, 213, 308, 365, 462, 469, 656
FalI	AAGNNNNNCTT	2 cut(s)	434, 466
FaqI	GGGAC	2 cut(s)	355, 603
FatI	CATG	7 cut(s)	30, 209, 304, 361, 458, 465, 652
FbaI	TGATCA	1 cut(s)	385
FblI	GTMKAC	2 cut(s)	96, 203
Fnu4HI	GCNGC	3 cut(s)	20, 650, 867
FokI	GGATG	4 cut(s)	126, 301, 790, 859
Fsp4HI	GCNGC	3 cut(s)	20, 650, 867
FspBI	CTAG	2 cut(s)	693, 851
GlaI	GCGC	1 cut(s)	23
GluI	GCNGC	3 cut(s)	20, 650, 867
GsuI	CTGGAG	1 cut(s)	30
HaeIII	GGCC	2 cut(s)	19, 214
HgaI	GACGC	2 cut(s)	345, 362
HhaI	GCGC	1 cut(s)	24
Hin1II	CATG	7 cut(s)	34, 213, 308, 365, 462, 469, 656
Hin6I	GCGC	1 cut(s)	22
HinP1I	GCGC	1 cut(s)	22
HincII	GTYRAC	1 cut(s)	742
HindII	GTYRAC	1 cut(s)	742
HinfI	GANTC	6 cut(s)	50, 182, 497, 560, 626, 781
HphI	GGTGA	1 cut(s)	362
Hpy166II	GTNNAC	3 cut(s)	97, 204, 742
Hpy188I	TCNGA	4 cut(s)	187, 565, 631, 894
Hpy188III	TCNNGA	5 cut(s)	47, 143, 151, 258, 434
Hpy8I	GTNNAC	3 cut(s)	97, 204, 742
HpyAV	CCTTC	2 cut(s)	431, 854
HpyCH4III	ACNGT	2 cut(s)	94, 840
HpyCH4V	TGCA	8 cut(s)	136, 209, 245, 278, 702, 731, 869, 886
HpyF10VI	GCNNNNNNNGC	1 cut(s)	215
HpyF3I	CTNAG	4 cut(s)	295, 488, 645, 711
Hsp92II	CATG	7 cut(s)	34, 213, 308, 365, 462, 469, 656
HspAI	GCGC	1 cut(s)	22
Ksp22I	TGATCA	1 cut(s)	385
Kzo9I	GATC	3 cut(s)	77, 385, 430
LguI	GCTCTTC	1 cut(s)	691
Lsp1109I	GCAGC	2 cut(s)	661, 853
LweI	GCATC	4 cut(s)	232, 279, 407, 837
MaeI	CTAG	2 cut(s)	693, 851
MaeIII	GTNAC	5 cut(s)	88, 350, 357, 468, 483
MalI	GATC	3 cut(s)	79, 387, 432
MboI	GATC	3 cut(s)	77, 385, 430
MboII	GAAGA	7 cut(s)	33, 45, 273, 520, 678, 779, 782
MlsI	TGGCCA	1 cut(s)	214
MluCI	AATT	6 cut(s)	146, 166, 406, 454, 607, 822
MluI	ACGCGT	1 cut(s)	354
MluNI	TGGCCA	1 cut(s)	214
MlyI	GAGTC	5 cut(s)	44, 191, 491, 569, 635
MmeI	TCCRAC	3 cut(s)	555, 609, 809
MnlI	CCTC	8 cut(s)	9, 49, 155, 228, 304, 484, 730, 837
Mox20I	TGGCCA	1 cut(s)	214
MroXI	GAANNNNTTC	1 cut(s)	421
MscI	TGGCCA	1 cut(s)	214
MseI	TTAA	3 cut(s)	447, 621, 798
Msp20I	TGGCCA	1 cut(s)	214
MspA1I	CMGCKG	1 cut(s)	194
Mva1269I	GAATGC	1 cut(s)	421
MvnI	CGCG	2 cut(s)	22, 356
MwoI	GCNNNNNNNGC	1 cut(s)	215
NdeII	GATC	3 cut(s)	77, 385, 430
NheI	GCTAGC	1 cut(s)	850
NlaIII	CATG	7 cut(s)	34, 213, 308, 365, 462, 469, 656
NlaIV	GGNNCC	3 cut(s)	36, 271, 591
NmuCI	GTSAC	3 cut(s)	350, 357, 483
NspI	RCATGY	1 cut(s)	656
PaeI	GCATGC	1 cut(s)	656
PciSI	GCTCTTC	1 cut(s)	691
PctI	GAATGC	1 cut(s)	421
PdmI	GAANNNNTTC	1 cut(s)	421
PfeI	GAWTC	1 cut(s)	781
PflMI	CCANNNNNTGG	1 cut(s)	574
PkrI	GCNGC	3 cut(s)	21, 651, 868
PleI	GAGTC	5 cut(s)	44, 190, 491, 568, 634
PpsI	GAGTC	5 cut(s)	44, 190, 491, 568, 634
PspN4I	GGNNCC	3 cut(s)	36, 271, 591
PspPI	GGNCC	3 cut(s)	462, 590, 829
PstI	CTGCAG	1 cut(s)	871
PstNI	CAGNNNCTG	1 cut(s)	251
PvuII	CAGCTG	1 cut(s)	194
RsaI	GTAC	1 cut(s)	105
RsaNI	GTAC	1 cut(s)	104
SapI	GCTCTTC	1 cut(s)	691
SaqAI	TTAA	3 cut(s)	447, 621, 798
SatI	GCNGC	3 cut(s)	20, 650, 867
Sau3AI	GATC	3 cut(s)	77, 385, 430
Sau96I	GGNCC	3 cut(s)	462, 590, 829
SchI	GAGTC	5 cut(s)	44, 191, 491, 569, 635
SfaNI	GCATC	4 cut(s)	232, 279, 407, 837
SfcI	CTRYAG	1 cut(s)	867
SinI	GGWCC	3 cut(s)	462, 590, 829
SphI	GCATGC	1 cut(s)	656
Sse9I	AATT	6 cut(s)	146, 166, 406, 454, 607, 822
SsiI	CCGC	1 cut(s)	20
SspMI	CTAG	2 cut(s)	693, 851
StyI	CCWWGG	1 cut(s)	555
TaaI	ACNGT	2 cut(s)	94, 840
TaqI	TCGA	2 cut(s)	152, 747
TasI	AATT	6 cut(s)	146, 166, 406, 454, 607, 822
TatI	WGTACW	1 cut(s)	103
TauI	GCSGC	1 cut(s)	22
TfiI	GAWTC	1 cut(s)	781
Tru1I	TTAA	3 cut(s)	447, 621, 798
Tru9I	TTAA	3 cut(s)	447, 621, 798
TscAI	CASTG	5 cut(s)	252, 280, 432, 606, 876
TseFI	GTSAC	3 cut(s)	350, 357, 483
TseI	GCWGC	2 cut(s)	649, 866
Tsp45I	GTSAC	3 cut(s)	350, 357, 483
TspDTI	ATGAA	2 cut(s)	447, 873
TspRI	CASTG	5 cut(s)	252, 280, 432, 606, 876
Van91I	CCANNNNNTGG	1 cut(s)	574
VpaK11BI	GGWCC	3 cut(s)	462, 590, 829
XapI	RAATTY	2 cut(s)	146, 454
XceI	RCATGY	1 cut(s)	656
XmiI	GTMKAC	2 cut(s)	96, 203
XmnI	GAANNNNTTC	1 cut(s)	421
XspI	CTAG	2 cut(s)	693, 851

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.