Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000894.1

Orthogroup ID

OG0007427

Physical Location & Seq

Genomic Coordinates Forward (+)

44456 .. 49502

Gene Structure 5047 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000894.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

atgggttcccatctaaaacttgcaaagagggctatggatactgagatgccggtcatggttcagatacaacaattgatccgaggagccaaaaatgctgtgtctctggcgcagggagtagttcattggcaaccacccaaacaggcactggataaggtgaaagaacttgtatgggagccttcaattagtcgttatggtgctgatgaaggtatgcctgaactcagggaggcattggtaaaaaagttgcaagaggaaaacaagttatgcaaatcttcggttatggttactgcaggggcaaatcaggcatttgtgaatcttgttcttacattgtgtgatgctggagactctgttgtcatgtttgcaccatactacttcaatgcctacatgtccttccagatgactggagttactaatatacttgtgggtcctggtcaaccagatacactttatccagatgcagactggttggagaaaacactgtcagaaacaaaaccaaccccaaaacttgtcacagttgttaatcctggcaacccatccggaacctacattccagaacctcttcttaagaggatttcagatatttgcagagaggctggatcatggcttgttgtggacaatacatatgagtattttatgtatgatgatttaaagcattcttgtgtggagggtaatcacattgtcaacatcttttccttctcaaaagcttatgggatgatgggatggcgagttggctatatagcatacccatctgaagtagagggctttggtactcaactcctcaaagttcaagataacattcccatctgtgcttcaatactttcacaacatcttgccctctgctcattagaaatgggacctgaatgggttgttgaaagagtgaaaggtcttgtcaagaacagggaaattgttttagaagcgctctccccactcggaaaacagtctgttaaaggtggagaaggtgctatatacctgtgggccaagcttccagacaaatatgtcaatgactccgaaattgttcactggcttgctcacaggcatggggtggtggtgattcctggaagcgcatgtgggtgccctggaaatttgagaatctcctttggtggcctgttagaggatgactgcaaagctgctgcagagaggctgagaagagggttagaagaattggtcaaagatggaatggtcaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006521 GO:0006555 GO:0006558 GO:0006568 GO:0006569 GO:0006570 GO:0006576 GO:0006586 GO:0006725 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008483 GO:0009056 GO:0009058 GO:0009063 GO:0009066 GO:0009072 GO:0009074 GO:0009308 GO:0009310 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009641 GO:0009698 GO:0009850 GO:0009851 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010252 GO:0010326 GO:0010364 GO:0010366 GO:0010565 GO:0010600 GO:0010817 GO:0016054 GO:0016740 GO:0016769 GO:0017144 GO:0019222 GO:0019439 GO:0019748 GO:0019752 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031335 GO:0031336 GO:0032350 GO:0032351 GO:0032353 GO:0033238 GO:0033239 GO:0034641 GO:0042402 GO:0042430 GO:0042436 GO:0042445 GO:0042446 GO:0042592 GO:0042762 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0045763 GO:0046218 GO:0046395 GO:0046483 GO:0046700 GO:0046885 GO:0048519 GO:0048523 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051175 GO:0062012 GO:0062014 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0090354 GO:0090356 GO:0090357 GO:1900908 GO:1900909 GO:1900911 GO:1900912 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606 GO:1901996 GO:1901997 GO:1902221

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

394

Amino Acids

43.5

Weight (kDa)

5.83

Isoelectric Point (pI)

37.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007427)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80360 AT1G80360 AT1G80360 AT1G80360
fragaria_vesca	FvH4_6g31270 FvH4_6g31270
malus_domestica	MD09G1216600.v1.1 MD17G1198700.v1.1
prunus_persica	Prupe.3G075300_v2.0.a1 Prupe.3G075300_v2.0.a1
pyrus_communis	pycom17g20340
rosa_chinensis	RchiOBHm_Chr2g0137261
rosa_laevigata	RLG00000019645
rosa_multiflora	Rmu_sc0000894.1_g000009
rosa_roxburghii	Rroxscaffold_2G00107250
rosa_rugosa	Rorug02G0340100 Rorug02G0340200 Rorug02G0340200 Rorug02G0340200 Rorug02G0340200 Rorug02G0340300 Rorug02G0340400
rosa_samantha	Rh2AG388800 Rh2BG396600
rosa_wichuraiana	Rw2G031860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	347, 992
AccB1I	GGYRCC	1 cut(s)	1068
AccIII	TCCGGA	1 cut(s)	533
AclWI	GGATC	2 cut(s)	70, 601
AcsI	RAATTY	1 cut(s)	1078
AcuI	CTGAAG	1 cut(s)	768
AfaI	GTAC	1 cut(s)	766
AfeI	AGCGCT	1 cut(s)	915
AfiI	CCNNNNNNNGG	1 cut(s)	1108
AflII	CTTAAG	1 cut(s)	560
AflIII	ACRYGT	1 cut(s)	381
AgsI	TTSAA	5 cut(s)	180, 373, 785, 810, 869
AjnI	CCWGG	4 cut(s)	424, 520, 1051, 1072
AloI	GAACNNNNNNTCC	2 cut(s)	529, 561
AluBI	AGCT	3 cut(s)	701, 979, 1124
AluI	AGCT	3 cut(s)	701, 979, 1124
Alw26I	GTCTC	2 cut(s)	105, 333
AlwI	GGATC	2 cut(s)	70, 601
AlwNI	CAGNNNCTG	1 cut(s)	145
Aor13HI	TCCGGA	1 cut(s)	533
Aor51HI	AGCGCT	1 cut(s)	915
AoxI	GGCC	2 cut(s)	972, 1099
ApeKI	GCWGC	2 cut(s)	1124, 1127
ApoI	RAATTY	1 cut(s)	1078
Asp700I	GAANNNNTTC	2 cut(s)	555, 1011
AspLEI	GCGC	3 cut(s)	109, 916, 1061
AspS9I	GGNCC	3 cut(s)	422, 851, 972
AsuHPI	GGTGA	2 cut(s)	166, 1057
AvaII	GGWCC	2 cut(s)	422, 851
BaeGI	GKGCMC	1 cut(s)	1073
BanI	GGYRCC	1 cut(s)	1068
BbvI	GCAGC	2 cut(s)	1111, 1114
BccI	CCATC	7 cut(s)	18, 538, 706, 711, 751, 806, 1163
BciT130I	CCWGG	4 cut(s)	426, 522, 1053, 1074
BciVI	GTATCC	1 cut(s)	31
BcoDI	GTCTC	2 cut(s)	105, 333
BfmI	CTRYAG	2 cut(s)	285, 1128
BfoI	RGCGCY	1 cut(s)	917
BfrI	CTTAAG	1 cut(s)	560
BfuI	GTATCC	1 cut(s)	31
BisI	GCNGC	2 cut(s)	1125, 1128
BlsI	GCNGC	2 cut(s)	1126, 1129
Bme1390I	CCNGG	4 cut(s)	426, 522, 1053, 1074
Bme18I	GGWCC	2 cut(s)	422, 851
BmgT120I	GGNCC	3 cut(s)	422, 851, 972
BmiI	GGNNCC	7 cut(s)	7, 85, 174, 423, 538, 852, 1070
BmrFI	CCNGG	4 cut(s)	426, 522, 1053, 1074
BmsI	GCATC	3 cut(s)	36, 322, 442
BpmI	CTGGAG	2 cut(s)	357, 420
BsaJI	CCNNGG	2 cut(s)	79, 1072
BsaWI	WCCGGW	1 cut(s)	533
BsaXI	ACNNNNNCTCC	2 cut(s)	330, 360
Bsc4I	CCNNNNNNNGG	1 cut(s)	1108
Bse118I	RCCGGY	1 cut(s)	49
Bse1I	ACTGG	4 cut(s)	150, 403, 464, 1022
BseAI	TCCGGA	1 cut(s)	533
BseBI	CCWGG	4 cut(s)	426, 522, 1053, 1074
BseDI	CCNNGG	2 cut(s)	79, 1072
BseGI	GGATG	4 cut(s)	530, 714, 722, 1117
BseLI	CCNNNNNNNGG	1 cut(s)	1108
BseMII	CTCAG	3 cut(s)	33, 232, 1130
BseNI	ACTGG	4 cut(s)	150, 403, 464, 1022
BseRI	GAGGAG	2 cut(s)	96, 764
BseSI	GKGCMC	1 cut(s)	1073
BseXI	GCAGC	2 cut(s)	1111, 1114
BshFI	GGCC	2 cut(s)	974, 1101
BshNI	GGYRCC	1 cut(s)	1068
BsiSI	CCGG	2 cut(s)	50, 534
BslFI	GGGAC	1 cut(s)	864
BslI	CCNNNNNNNGG	1 cut(s)	1108
BsmAI	GTCTC	2 cut(s)	105, 333
BsmFI	GGGAC	1 cut(s)	864
BsmI	GAATGC	1 cut(s)	649
BsnI	GGCC	2 cut(s)	974, 1101
Bsp1286I	GDGCHC	1 cut(s)	1073
Bsp13I	TCCGGA	1 cut(s)	533
Bsp143I	GATC	2 cut(s)	75, 593
BspANI	GGCC	2 cut(s)	974, 1101
BspCNI	CTCAG	3 cut(s)	34, 231, 1131
BspEI	TCCGGA	1 cut(s)	533
BspLI	GGNNCC	7 cut(s)	7, 85, 174, 423, 538, 852, 1070
BspMAI	CTGCAG	2 cut(s)	289, 1132
BspPI	GGATC	2 cut(s)	70, 601
BspT107I	GGYRCC	1 cut(s)	1068
BspTI	CTTAAG	1 cut(s)	560
BsrFI	RCCGGY	1 cut(s)	49
BsrI	ACTGG	4 cut(s)	150, 403, 464, 1022
BssAI	RCCGGY	1 cut(s)	49
BssECI	CCNNGG	2 cut(s)	79, 1072
BssMI	GATC	2 cut(s)	75, 593
Bst2UI	CCWGG	4 cut(s)	426, 522, 1053, 1074
Bst4CI	ACNGT	3 cut(s)	477, 511, 936
Bst6I	CTCTTC	2 cut(s)	561, 1138
BstAFI	CTTAAG	1 cut(s)	560
BstC8I	GCNNGC	1 cut(s)	1023
BstDEI	CTNAG	3 cut(s)	42, 218, 1139
BstENI	CCTNNNNNAGG	1 cut(s)	1106
BstF5I	GGATG	4 cut(s)	530, 714, 722, 1117
BstH2I	RGCGCY	1 cut(s)	917
BstHHI	GCGC	3 cut(s)	109, 916, 1061
BstKTI	GATC	2 cut(s)	78, 596
BstMAI	GTCTC	2 cut(s)	105, 333
BstMBI	GATC	2 cut(s)	75, 593
BstMWI	GCNNNNNNNGC	3 cut(s)	29, 92, 299
BstNI	CCWGG	4 cut(s)	426, 522, 1053, 1074
BstNSI	RCATGY	2 cut(s)	385, 1065
BstSCI	CCNGG	4 cut(s)	424, 520, 1051, 1072
BstSFI	CTRYAG	2 cut(s)	285, 1128
BstSLI	GKGCMC	1 cut(s)	1073
BstV1I	GCAGC	2 cut(s)	1111, 1114
BstXI	CCANNNNNNTGG	1 cut(s)	398
BsuI	GTATCC	1 cut(s)	31
BsuRI	GGCC	2 cut(s)	974, 1101
BtsCI	GGATG	4 cut(s)	530, 714, 722, 1117
BtsIMutI	CAGTG	3 cut(s)	143, 473, 1015
Cac8I	GCNNGC	1 cut(s)	1023
CaiI	CAGNNNCTG	1 cut(s)	145
CfoI	GCGC	3 cut(s)	109, 916, 1061
Cfr10I	RCCGGY	1 cut(s)	49
Cfr13I	GGNCC	3 cut(s)	422, 851, 972
Csp6I	GTAC	1 cut(s)	765
CviAII	CATG	6 cut(s)	55, 352, 382, 597, 1034, 1062
CviQI	GTAC	1 cut(s)	765
DdeI	CTNAG	3 cut(s)	42, 218, 1139
DpnI	GATC	2 cut(s)	77, 595
DpnII	GATC	2 cut(s)	75, 593
DraI	TTTAAA	1 cut(s)	645
DrdI	GACNNNNNNGTC	2 cut(s)	347, 992
DseDI	GACNNNNNNGTC	2 cut(s)	347, 992
Eam1104I	CTCTTC	2 cut(s)	561, 1138
EarI	CTCTTC	2 cut(s)	561, 1138
Eco47I	GGWCC	2 cut(s)	422, 851
Eco47III	AGCGCT	1 cut(s)	915
Eco57I	CTGAAG	1 cut(s)	768
EcoNI	CCTNNNNNAGG	1 cut(s)	1106
EcoO109I	RGGNCCY	2 cut(s)	422, 851
EcoRII	CCWGG	4 cut(s)	424, 520, 1051, 1072
FaeI	CATG	6 cut(s)	58, 355, 385, 600, 1037, 1065
FaqI	GGGAC	1 cut(s)	864
FatI	CATG	6 cut(s)	54, 351, 381, 596, 1033, 1061
FauNDI	CATATG	1 cut(s)	619
Fnu4HI	GCNGC	2 cut(s)	1125, 1128
FokI	GGATG	4 cut(s)	517, 721, 729, 1124
Fsp4HI	GCNGC	2 cut(s)	1125, 1128
GlaI	GCGC	3 cut(s)	108, 915, 1060
GluI	GCNGC	2 cut(s)	1125, 1128
GsuI	CTGGAG	2 cut(s)	357, 420
HaeII	RGCGCY	1 cut(s)	917
HaeIII	GGCC	2 cut(s)	974, 1101
HapII	CCGG	2 cut(s)	50, 534
HhaI	GCGC	3 cut(s)	109, 916, 1061
Hin1II	CATG	6 cut(s)	58, 355, 385, 600, 1037, 1065
Hin6I	GCGC	3 cut(s)	107, 914, 1059
HinP1I	GCGC	3 cut(s)	107, 914, 1059
HincII	GTYRAC	2 cut(s)	431, 679
HindII	GTYRAC	2 cut(s)	431, 679
HindIII	AAGCTT	2 cut(s)	699, 977
HinfI	GANTC	5 cut(s)	310, 341, 1001, 1048, 1086
HpaII	CCGG	2 cut(s)	50, 534
HphI	GGTGA	2 cut(s)	166, 1057
Hpy166II	GTNNAC	4 cut(s)	431, 610, 679, 1015
Hpy188I	TCNGA	7 cut(s)	63, 80, 481, 574, 748, 929, 1006
Hpy188III	TCNNGA	7 cut(s)	391, 449, 534, 548, 785, 889, 983
Hpy8I	GTNNAC	4 cut(s)	431, 610, 679, 1015
HpyAV	CCTTC	5 cut(s)	186, 197, 397, 700, 947
HpyCH4III	ACNGT	3 cut(s)	477, 511, 936
HpyCH4V	TGCA	9 cut(s)	23, 244, 264, 287, 359, 455, 582, 1119, 1130
HpyF10VI	GCNNNNNNNGC	3 cut(s)	29, 92, 299
HpyF3I	CTNAG	3 cut(s)	42, 218, 1139
Hsp92II	CATG	6 cut(s)	58, 355, 385, 600, 1037, 1065
HspAI	GCGC	3 cut(s)	107, 914, 1059
Kpn2I	TCCGGA	1 cut(s)	533
Kzo9I	GATC	2 cut(s)	75, 593
LmnI	GCTCC	2 cut(s)	83, 172
Lsp1109I	GCAGC	2 cut(s)	1111, 1114
LweI	GCATC	3 cut(s)	36, 322, 442
MaeIII	GTNAC	3 cut(s)	280, 403, 505
MalI	GATC	2 cut(s)	77, 595
MboI	GATC	2 cut(s)	75, 593
MboII	GAAGA	4 cut(s)	261, 548, 1155, 1166
MfeI	CAATTG	1 cut(s)	71
MhlI	GDGCHC	1 cut(s)	1073
MluCI	AATT	7 cut(s)	71, 180, 900, 1008, 1078, 1157, 1180
MlyI	GAGTC	2 cut(s)	335, 995
MmeI	TCCRAC	1 cut(s)	444
MroI	TCCGGA	1 cut(s)	533
MroXI	GAANNNNTTC	2 cut(s)	555, 1011
MseI	TTAA	5 cut(s)	516, 561, 644, 942, 1183
MslI	CAYNNNNRTG	3 cut(s)	654, 1032, 1066
MspCI	CTTAAG	1 cut(s)	560
MspI	CCGG	2 cut(s)	50, 534
MspR9I	CCNGG	4 cut(s)	426, 522, 1053, 1074
MunI	CAATTG	1 cut(s)	71
Mva1269I	GAATGC	1 cut(s)	649
MvaI	CCWGG	4 cut(s)	426, 522, 1053, 1074
MwoI	GCNNNNNNNGC	3 cut(s)	29, 92, 299
NdeI	CATATG	1 cut(s)	619
NdeII	GATC	2 cut(s)	75, 593
NlaIII	CATG	6 cut(s)	58, 355, 385, 600, 1037, 1065
NlaIV	GGNNCC	7 cut(s)	7, 85, 174, 423, 538, 852, 1070
NmuCI	GTSAC	1 cut(s)	505
NspI	RCATGY	2 cut(s)	385, 1065
PciI	ACATGT	1 cut(s)	381
PctI	GAATGC	1 cut(s)	649
PdmI	GAANNNNTTC	2 cut(s)	555, 1011
PfeI	GAWTC	3 cut(s)	310, 1048, 1086
PfoI	TCCNGGA	1 cut(s)	1051
PkrI	GCNGC	2 cut(s)	1126, 1129
PleI	GAGTC	2 cut(s)	335, 995
PpsI	GAGTC	2 cut(s)	335, 995
PpuMI	RGGWCCY	2 cut(s)	422, 851
PscI	ACATGT	1 cut(s)	381
Psp5II	RGGWCCY	2 cut(s)	422, 851
Psp6I	CCWGG	4 cut(s)	424, 520, 1051, 1072
PspGI	CCWGG	4 cut(s)	424, 520, 1051, 1072
PspN4I	GGNNCC	7 cut(s)	7, 85, 174, 423, 538, 852, 1070
PspPI	GGNCC	3 cut(s)	422, 851, 972
PspPPI	RGGWCCY	2 cut(s)	422, 851
PstI	CTGCAG	2 cut(s)	289, 1132
PstNI	CAGNNNCTG	1 cut(s)	145
RsaI	GTAC	1 cut(s)	766
RsaNI	GTAC	1 cut(s)	765
RseI	CAYNNNNRTG	3 cut(s)	654, 1032, 1066
SaqAI	TTAA	5 cut(s)	516, 561, 644, 942, 1183
SatI	GCNGC	2 cut(s)	1125, 1128
Sau3AI	GATC	2 cut(s)	75, 593
Sau96I	GGNCC	3 cut(s)	422, 851, 972
SchI	GAGTC	2 cut(s)	335, 995
ScrFI	CCNGG	4 cut(s)	426, 522, 1053, 1074
SduI	GDGCHC	1 cut(s)	1073
SfaNI	GCATC	3 cut(s)	36, 322, 442
SfcI	CTRYAG	2 cut(s)	285, 1128
SinI	GGWCC	2 cut(s)	422, 851
SmiMI	CAYNNNNRTG	3 cut(s)	654, 1032, 1066
SmlI	CTYRAG	1 cut(s)	560
SmoI	CTYRAG	1 cut(s)	560
Sse9I	AATT	7 cut(s)	71, 180, 900, 1008, 1078, 1157, 1180
StyD4I	CCNGG	4 cut(s)	424, 520, 1051, 1072
TaaI	ACNGT	3 cut(s)	477, 511, 936
TasI	AATT	7 cut(s)	71, 180, 900, 1008, 1078, 1157, 1180
TfiI	GAWTC	3 cut(s)	310, 1048, 1086
Tru1I	TTAA	5 cut(s)	516, 561, 644, 942, 1183
Tru9I	TTAA	5 cut(s)	516, 561, 644, 942, 1183
TscAI	CASTG	3 cut(s)	150, 480, 1022
TseFI	GTSAC	1 cut(s)	505
TseI	GCWGC	2 cut(s)	1124, 1127
Tsp45I	GTSAC	1 cut(s)	505
TspDTI	ATGAA	2 cut(s)	110, 216
TspRI	CASTG	3 cut(s)	150, 480, 1022
Vha464I	CTTAAG	1 cut(s)	560
VpaK11BI	GGWCC	2 cut(s)	422, 851
XagI	CCTNNNNNAGG	1 cut(s)	1106
XapI	RAATTY	1 cut(s)	1078
XceI	RCATGY	2 cut(s)	385, 1065
XcmI	CCANNNNNNNNNTGG	2 cut(s)	142, 456
XmnI	GAANNNNTTC	2 cut(s)	555, 1011

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.