FvH4_6g35400

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0010585
Physical Location & Seq
Forward (+)
27935894 .. 27936472
579 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g35400.t1

Sequence Viewer

Length: 312 bp
ATGGGAGTTAGAGGCAGTAGGTTGAGTCAGATCATTGGAGTGAGCAAGAGACTGAGATCGAGCACTCCGGTTATGACTCCTAGAGGTTATGTGCCTGTTTGTGTCGGAGTCGATGGTGATTTCCAGCGGTTCATGGTTCATACCAAATTGCTTGGACATCAAGAATTCATGGAGCTGCTGTATAGATCAGCAGAGGAATATGGTTTCTGCAATGATGGGGTTTTAAGGATTCCATATGAAGCTAAGGATTTTGAGGAGTACTGGATGATCAAAAAGTCCAAACCAAAGATTTTCAAGGTTAAACCACTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

104

Amino Acids

11.92

Weight (kDa)

9.51

Isoelectric Point (pI)

27.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 19 - 87 9e-16 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 127
AcsI RAATTY 1 cut(s) 164
AfaI GTAC 1 cut(s) 260
AgsI TTSAA 1 cut(s) 295
AluBI AGCT 2 cut(s) 175, 242
AluI AGCT 2 cut(s) 175, 242
Alw21I GWGCWC 1 cut(s) 65
Alw26I GTCTC 1 cut(s) 43
ApeKI GCWGC 1 cut(s) 175
ApoI RAATTY 1 cut(s) 164
AsuHPI GGTGA 1 cut(s) 128
Bbv12I GWGCWC 1 cut(s) 65
BbvI GCAGC 1 cut(s) 162
BccI CCATC 2 cut(s) 107, 209
BclI TGATCA 1 cut(s) 267
BcoDI GTCTC 1 cut(s) 43
BfaI CTAG 2 cut(s) 81, 310
BisI GCNGC 1 cut(s) 176
BlsI GCNGC 1 cut(s) 177
BmcAI AGTACT 1 cut(s) 260
Bpu10I CCTNAGC 1 cut(s) 243
BsaWI WCCGGW 1 cut(s) 67
BsaXI ACNNNNNCTCC 2 cut(s) 164, 194
Bse1I ACTGG 1 cut(s) 266
Bse3DI GCAATG 1 cut(s) 217
BseGI GGATG 1 cut(s) 270
BseMI GCAATG 1 cut(s) 217
BseMII CTCAG 1 cut(s) 44
BseNI ACTGG 1 cut(s) 266
BseRI GAGGAG 1 cut(s) 269
BseXI GCAGC 1 cut(s) 162
BsiHKAI GWGCWC 1 cut(s) 65
BsiSI CCGG 1 cut(s) 68
BsmAI GTCTC 1 cut(s) 43
Bsp1286I GDGCHC 1 cut(s) 65
Bsp143I GATC 4 cut(s) 30, 56, 185, 267
BspACI CCGC 1 cut(s) 127
BspCNI CTCAG 1 cut(s) 45
BsrDI GCAATG 1 cut(s) 217
BsrI ACTGG 1 cut(s) 266
BssMI GATC 4 cut(s) 30, 56, 185, 267
BstDEI CTNAG 2 cut(s) 53, 243
BstF5I GGATG 1 cut(s) 270
BstKTI GATC 4 cut(s) 33, 59, 188, 270
BstMAI GTCTC 1 cut(s) 43
BstMBI GATC 4 cut(s) 30, 56, 185, 267
BstV1I GCAGC 1 cut(s) 162
BtsCI GGATG 1 cut(s) 270
Csp6I GTAC 1 cut(s) 259
CviAII CATG 2 cut(s) 133, 169
CviJI RGCY 2 cut(s) 175, 242
CviKI_1 RGCY 2 cut(s) 175, 242
CviQI GTAC 1 cut(s) 259
DdeI CTNAG 2 cut(s) 53, 243
DpnI GATC 4 cut(s) 32, 58, 187, 269
DpnII GATC 4 cut(s) 30, 56, 185, 267
EcoRI GAATTC 1 cut(s) 164
FaeI CATG 2 cut(s) 136, 172
FaiI YATR 9 cut(s) 74, 90, 134, 141, 170, 183, 201, 235, 237
FatI CATG 2 cut(s) 132, 168
FauNDI CATATG 1 cut(s) 235
FbaI TGATCA 1 cut(s) 267
Fnu4HI GCNGC 1 cut(s) 176
FokI GGATG 1 cut(s) 277
Fsp4HI GCNGC 1 cut(s) 176
FspBI CTAG 2 cut(s) 81, 310
GluI GCNGC 1 cut(s) 176
HapII CCGG 1 cut(s) 68
Hin1II CATG 2 cut(s) 136, 172
HinfI GANTC 4 cut(s) 25, 76, 108, 229
HpaII CCGG 1 cut(s) 68
HphI GGTGA 1 cut(s) 128
Hpy188I TCNGA 2 cut(s) 30, 107
Hpy188III TCNNGA 1 cut(s) 161
HpyCH4V TGCA 1 cut(s) 210
HpyF3I CTNAG 2 cut(s) 53, 243
Hsp92II CATG 2 cut(s) 136, 172
Ksp22I TGATCA 1 cut(s) 267
Kzo9I GATC 4 cut(s) 30, 56, 185, 267
LmnI GCTCC 1 cut(s) 172
LpnPI CCDG 4 cut(s) 81, 108, 137, 247
Lsp1109I GCAGC 1 cut(s) 162
MaeI CTAG 2 cut(s) 81, 310
MalI GATC 4 cut(s) 32, 58, 187, 269
MboI GATC 4 cut(s) 30, 56, 185, 267
MhlI GDGCHC 1 cut(s) 65
MluCI AATT 2 cut(s) 146, 164
MlyI GAGTC 3 cut(s) 34, 70, 117
MmeI TCCRAC 1 cut(s) 85
MnlI CCTC 4 cut(s) 5, 77, 187, 247
MseI TTAA 2 cut(s) 224, 300
MslI CAYNNNNRTG 1 cut(s) 38
MspA1I CMGCKG 1 cut(s) 127
MspI CCGG 1 cut(s) 68
NdeI CATATG 1 cut(s) 235
NdeII GATC 4 cut(s) 30, 56, 185, 267
NlaIII CATG 2 cut(s) 136, 172
PfeI GAWTC 1 cut(s) 229
PkrI GCNGC 1 cut(s) 177
PleI GAGTC 3 cut(s) 33, 70, 116
PpsI GAGTC 3 cut(s) 33, 70, 116
RsaI GTAC 1 cut(s) 260
RsaNI GTAC 1 cut(s) 259
RseI CAYNNNNRTG 1 cut(s) 38
SaqAI TTAA 2 cut(s) 224, 300
SatI GCNGC 1 cut(s) 176
Sau3AI GATC 4 cut(s) 30, 56, 185, 267
ScaI AGTACT 1 cut(s) 260
SchI GAGTC 3 cut(s) 34, 70, 117
SduI GDGCHC 1 cut(s) 65
SetI ASST 5 cut(s) 23, 88, 177, 244, 300
SmiMI CAYNNNNRTG 1 cut(s) 38
Sse9I AATT 2 cut(s) 146, 164
SsiI CCGC 1 cut(s) 127
SspMI CTAG 2 cut(s) 81, 310
TaqI TCGA 2 cut(s) 59, 111
TasI AATT 2 cut(s) 146, 164
TatI WGTACW 1 cut(s) 258
TfiI GAWTC 1 cut(s) 229
Tru1I TTAA 2 cut(s) 224, 300
Tru9I TTAA 2 cut(s) 224, 300
TseI GCWGC 1 cut(s) 175
TspDTI ATGAA 4 cut(s) 121, 128, 157, 252
XapI RAATTY 1 cut(s) 164
XspI CTAG 2 cut(s) 81, 310
ZrmI AGTACT 1 cut(s) 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.