MD09G1089100.v1.1

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0010585
Physical Location & Seq
Forward (+)
6500577 .. 6500903
327 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1089100.v1.1.491

Sequence Viewer

Length: 327 bp
ATGAAGAGAGTGCTTTGCTATTTGCTAATGGGGGTGAGAAGAAGCAGTAAATTAAGCCAGTTAATAGGAGCAAAAAGACTGAAAAGTTCTCATTCTACAACACCGAAACGTTACGTGCCTGTTTGTGTTGGTGTGGATGGTGATACTAAGCGTTTCATGATTCATTCCAAGTTGCTTCGTCATGTAGAGTTCTTGAAACTGCTATATAGATCAGCTGAGGAATATGGGTTTTGCAATGATGGGGTTTTGAGGATTCCATACGAAGCCAGGGATTTTGAAGAGTTGTTCGTGGCTAGAATTTCCGTTGGGATGTTTCCTAGCAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

109

Amino Acids

12.5

Weight (kDa)

9.96

Isoelectric Point (pI)

47.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 20 - 95 2.3e-15 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 109
AcsI RAATTY 1 cut(s) 297
AgsI TTSAA 2 cut(s) 196, 278
AjnI CCWGG 1 cut(s) 266
AluBI AGCT 1 cut(s) 215
AluI AGCT 1 cut(s) 215
ApoI RAATTY 1 cut(s) 297
AsuHPI GGTGA 2 cut(s) 46, 152
BbvCI CCTCAGC 1 cut(s) 216
BccI CCATC 2 cut(s) 131, 233
BciT130I CCWGG 1 cut(s) 268
BfaI CTAG 2 cut(s) 294, 318
Bme1390I CCNGG 1 cut(s) 268
BmrFI CCNGG 1 cut(s) 268
Bpu10I CCTNAGC 1 cut(s) 216
BsaAI YACGTR 1 cut(s) 115
BsaJI CCNNGG 1 cut(s) 267
Bse1I ACTGG 1 cut(s) 58
Bse3DI GCAATG 1 cut(s) 241
BseBI CCWGG 1 cut(s) 268
BseDI CCNNGG 1 cut(s) 267
BseGI GGATG 2 cut(s) 142, 315
BseMI GCAATG 1 cut(s) 241
BseMII CTCAG 1 cut(s) 207
BseNI ACTGG 1 cut(s) 58
Bsp143I GATC 1 cut(s) 209
BspCNI CTCAG 1 cut(s) 208
BspHI TCATGA 1 cut(s) 156
BsrDI GCAATG 1 cut(s) 241
BsrI ACTGG 1 cut(s) 58
BssECI CCNNGG 1 cut(s) 267
BssMI GATC 1 cut(s) 209
Bst2UI CCWGG 1 cut(s) 268
Bst6I CTCTTC 1 cut(s) 273
BstBAI YACGTR 1 cut(s) 115
BstDEI CTNAG 2 cut(s) 147, 216
BstF5I GGATG 2 cut(s) 142, 315
BstKTI GATC 1 cut(s) 212
BstMBI GATC 1 cut(s) 209
BstNI CCWGG 1 cut(s) 268
BstSCI CCNGG 1 cut(s) 266
BtsCI GGATG 2 cut(s) 142, 315
CciI TCATGA 1 cut(s) 156
CviAII CATG 2 cut(s) 157, 182
CviJI RGCY 4 cut(s) 57, 215, 266, 293
CviKI_1 RGCY 4 cut(s) 57, 215, 266, 293
DdeI CTNAG 2 cut(s) 147, 216
DpnI GATC 1 cut(s) 211
DpnII GATC 1 cut(s) 209
Eam1104I CTCTTC 1 cut(s) 273
EarI CTCTTC 1 cut(s) 273
EcoRII CCWGG 1 cut(s) 266
FaeI CATG 2 cut(s) 160, 185
FaiI YATR 6 cut(s) 158, 183, 205, 207, 225, 259
FatI CATG 2 cut(s) 156, 181
FokI GGATG 2 cut(s) 149, 322
FspBI CTAG 2 cut(s) 294, 318
Hin1II CATG 2 cut(s) 160, 185
HinfI GANTC 2 cut(s) 160, 253
HphI GGTGA 2 cut(s) 46, 152
Hpy188III TCNNGA 2 cut(s) 157, 193
HpyCH4IV ACGT 2 cut(s) 109, 114
HpyCH4V TGCA 1 cut(s) 234
HpyF3I CTNAG 2 cut(s) 147, 216
HpySE526I ACGT 2 cut(s) 109, 114
Hsp92II CATG 2 cut(s) 160, 185
Kzo9I GATC 1 cut(s) 209
LmnI GCTCC 1 cut(s) 68
LpnPI CCDG 4 cut(s) 71, 132, 253, 280
MaeI CTAG 2 cut(s) 294, 318
MaeII ACGT 2 cut(s) 109, 114
MaeIII GTNAC 1 cut(s) 110
MalI GATC 1 cut(s) 211
MboI GATC 1 cut(s) 209
MboII GAAGA 3 cut(s) 16, 51, 290
MluCI AATT 2 cut(s) 50, 297
MnlI CCTC 2 cut(s) 211, 243
MseI TTAA 2 cut(s) 53, 62
MspA1I CMGCKG 1 cut(s) 215
MspR9I CCNGG 1 cut(s) 268
MvaI CCWGG 1 cut(s) 268
NdeII GATC 1 cut(s) 209
NlaIII CATG 2 cut(s) 160, 185
PagI TCATGA 1 cut(s) 156
PfeI GAWTC 2 cut(s) 160, 253
Ppu21I YACGTR 1 cut(s) 115
Psp1406I AACGTT 1 cut(s) 109
Psp6I CCWGG 1 cut(s) 266
PspGI CCWGG 1 cut(s) 266
PvuII CAGCTG 1 cut(s) 215
SaqAI TTAA 2 cut(s) 53, 62
Sau3AI GATC 1 cut(s) 209
ScrFI CCNGG 1 cut(s) 268
SetI ASST 3 cut(s) 112, 117, 217
Sse9I AATT 2 cut(s) 50, 297
SspMI CTAG 2 cut(s) 294, 318
StyD4I CCNGG 1 cut(s) 266
TaiI ACGT 2 cut(s) 112, 117
TasI AATT 2 cut(s) 50, 297
TfiI GAWTC 2 cut(s) 160, 253
Tru1I TTAA 2 cut(s) 53, 62
Tru9I TTAA 2 cut(s) 53, 62
TspDTI ATGAA 3 cut(s) 17, 145, 152
TspGWI ACGGA 1 cut(s) 292
XapI RAATTY 1 cut(s) 297
XspI CTAG 2 cut(s) 294, 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.