Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0010585

Physical Location & Seq

Genomic Coordinates Reverse (-)

2561778 .. 2562092

Gene Structure 315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G035100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGGGGGTGAGAAGCAGTAAGCTGAGCCAGTTCATCGGCGCTCGAGGAGCTAAAAGACTGAAATTCCCTCCTCCGGTGGCACCTAGAGGTTATGTGCCTGTTTGTGTTGGTGTGGATGGTGATACTAGGCGTTTCATGGTGCATACCAAGTTGCTTGGCCATGCAGAGTTCTTGGAGCTGCTTTACAGATCAGCTGAGGAATATGGTTTTTGCAATGATGGGGTTTTGAGGATCCCATATGAGGCCAAGGATTTTGAGGAGTATTGGATGATCAAGAGGTCCAAACCCAAGATCTACAAGGTTGAACCAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Auxin_inducible

Protein Analysis

105

Amino Acids

11.94

Weight (kDa)

9.48

Isoelectric Point (pI)

43.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010585)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g35400
malus_domestica	MD09G1089100.v1.1 MD09G1170600.v1.1 MD09G1176000.v1.1 MD09G1176100.v1.1
prunus_persica	Prupe.3G035100_v2.0.a1
pyrus_communis	pycom09g01500 pycom09g08830 pycom09g09410 pycom09g09420 pycom09g10770
rosa_chinensis	RchiOBHm_Chr2g0146931
rosa_laevigata	RLG00000020227
rosa_multiflora	Rmu_sc0000566.1_g000022
rosa_roxburghii	Rroxscaffold_2G00099850
rosa_rugosa	Rorug02G0397500
rosa_samantha	Rh2AG454000 Rh2BG466700 Rh2CG441100 Rh2DG475600
rosa_wichuraiana	Rw2G037070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	79
AclWI	GGATC	2 cut(s)	226, 239
AcoI	YGGCCR	1 cut(s)	157
AcsI	RAATTY	1 cut(s)	62
AfiI	CCNNNNNNNGG	2 cut(s)	73, 241
AgsI	TTSAA	1 cut(s)	305
AluBI	AGCT	4 cut(s)	22, 50, 178, 194
AluI	AGCT	4 cut(s)	22, 50, 178, 194
AlwI	GGATC	2 cut(s)	226, 239
Ama87I	CYCGRG	1 cut(s)	42
AoxI	GGCC	2 cut(s)	157, 243
ApeKI	GCWGC	1 cut(s)	178
ApoI	RAATTY	1 cut(s)	62
AspLEI	GCGC	1 cut(s)	41
AspS9I	GGNCC	1 cut(s)	279
AsuHPI	GGTGA	2 cut(s)	19, 131
AvaI	CYCGRG	1 cut(s)	42
AvaII	GGWCC	1 cut(s)	279
BalI	TGGCCA	1 cut(s)	159
BamHI	GGATCC	1 cut(s)	231
BanI	GGYRCC	1 cut(s)	79
BbvCI	CCTCAGC	1 cut(s)	195
BbvI	GCAGC	1 cut(s)	165
BccI	CCATC	2 cut(s)	110, 212
BclI	TGATCA	1 cut(s)	270
BfaI	CTAG	2 cut(s)	84, 126
BfoI	RGCGCY	1 cut(s)	42
BglII	AGATCT	1 cut(s)	291
BisI	GCNGC	1 cut(s)	179
BlpI	GCTNAGC	1 cut(s)	23
BlsI	GCNGC	1 cut(s)	180
Bme18I	GGWCC	1 cut(s)	279
BmeT110I	CYCGRG	1 cut(s)	42
BmgT120I	GGNCC	1 cut(s)	279
BmiI	GGNNCC	2 cut(s)	81, 233
Bpu10I	CCTNAGC	1 cut(s)	195
Bpu1102I	GCTNAGC	1 cut(s)	23
BsaJI	CCNNGG	1 cut(s)	246
BsaWI	WCCGGW	1 cut(s)	73
Bsc4I	CCNNNNNNNGG	2 cut(s)	73, 241
Bse1I	ACTGG	2 cut(s)	28, 308
Bse3DI	GCAATG	1 cut(s)	220
BseDI	CCNNGG	1 cut(s)	246
BseGI	GGATG	2 cut(s)	121, 273
BseLI	CCNNNNNNNGG	2 cut(s)	73, 241
BseMI	GCAATG	1 cut(s)	220
BseMII	CTCAG	2 cut(s)	14, 186
BseNI	ACTGG	2 cut(s)	28, 308
BseRI	GAGGAG	3 cut(s)	60, 60, 272
BseXI	GCAGC	1 cut(s)	165
BshFI	GGCC	2 cut(s)	159, 245
BshNI	GGYRCC	1 cut(s)	79
BsiHKCI	CYCGRG	1 cut(s)	42
BsiSI	CCGG	1 cut(s)	74
BslI	CCNNNNNNNGG	2 cut(s)	73, 241
BsnI	GGCC	2 cut(s)	159, 245
BsoBI	CYCGRG	1 cut(s)	42
Bsp143I	GATC	4 cut(s)	188, 231, 270, 291
Bsp1720I	GCTNAGC	1 cut(s)	23
BspANI	GGCC	2 cut(s)	159, 245
BspCNI	CTCAG	2 cut(s)	15, 187
BspLI	GGNNCC	2 cut(s)	81, 233
BspPI	GGATC	2 cut(s)	226, 239
BspT107I	GGYRCC	1 cut(s)	79
BsrDI	GCAATG	1 cut(s)	220
BsrI	ACTGG	2 cut(s)	28, 308
BssECI	CCNNGG	1 cut(s)	246
BssMI	GATC	4 cut(s)	188, 231, 270, 291
BssT1I	CCWWGG	1 cut(s)	246
BstDEI	CTNAG	2 cut(s)	23, 195
BstF5I	GGATG	2 cut(s)	121, 273
BstH2I	RGCGCY	1 cut(s)	42
BstHHI	GCGC	1 cut(s)	41
BstKTI	GATC	4 cut(s)	191, 234, 273, 294
BstMBI	GATC	4 cut(s)	188, 231, 270, 291
BstMWI	GCNNNNNNNGC	1 cut(s)	47
BstV1I	GCAGC	1 cut(s)	165
BstX2I	RGATCY	2 cut(s)	231, 291
BstYI	RGATCY	2 cut(s)	231, 291
BsuRI	GGCC	2 cut(s)	159, 245
BtsCI	GGATG	2 cut(s)	121, 273
CfoI	GCGC	1 cut(s)	41
Cfr13I	GGNCC	1 cut(s)	279
CviAII	CATG	2 cut(s)	136, 161
CviJI	RGCY	7 cut(s)	22, 27, 50, 159, 178, 194, 245
CviKI_1	RGCY	7 cut(s)	22, 27, 50, 159, 178, 194, 245
DdeI	CTNAG	2 cut(s)	23, 195
DpnI	GATC	4 cut(s)	190, 233, 272, 293
DpnII	GATC	4 cut(s)	188, 231, 270, 291
EaeI	YGGCCR	1 cut(s)	157
Eco130I	CCWWGG	1 cut(s)	246
Eco47I	GGWCC	1 cut(s)	279
Eco88I	CYCGRG	1 cut(s)	42
EcoT14I	CCWWGG	1 cut(s)	246
ErhI	CCWWGG	1 cut(s)	246
FaeI	CATG	2 cut(s)	139, 164
FaiI	YATR	7 cut(s)	93, 137, 144, 162, 204, 238, 240
FatI	CATG	2 cut(s)	135, 160
FauNDI	CATATG	1 cut(s)	238
FbaI	TGATCA	1 cut(s)	270
Fnu4HI	GCNGC	1 cut(s)	179
FokI	GGATG	2 cut(s)	128, 280
Fsp4HI	GCNGC	1 cut(s)	179
FspBI	CTAG	2 cut(s)	84, 126
GlaI	GCGC	1 cut(s)	40
GluI	GCNGC	1 cut(s)	179
HaeII	RGCGCY	1 cut(s)	42
HaeIII	GGCC	2 cut(s)	159, 245
HapII	CCGG	1 cut(s)	74
HhaI	GCGC	1 cut(s)	41
Hin1II	CATG	2 cut(s)	139, 164
Hin6I	GCGC	1 cut(s)	39
HinP1I	GCGC	1 cut(s)	39
HpaII	CCGG	1 cut(s)	74
HphI	GGTGA	2 cut(s)	19, 131
Hpy188III	TCNNGA	1 cut(s)	274
HpyCH4V	TGCA	3 cut(s)	142, 164, 213
HpyF10VI	GCNNNNNNNGC	1 cut(s)	47
HpyF3I	CTNAG	2 cut(s)	23, 195
Hsp92II	CATG	2 cut(s)	139, 164
HspAI	GCGC	1 cut(s)	39
Ksp22I	TGATCA	1 cut(s)	270
Kzo9I	GATC	4 cut(s)	188, 231, 270, 291
LmnI	GCTCC	2 cut(s)	47, 175
LpnPI	CCDG	3 cut(s)	41, 87, 111
Lsp1109I	GCAGC	1 cut(s)	165
MaeI	CTAG	2 cut(s)	84, 126
MalI	GATC	4 cut(s)	190, 233, 272, 293
MboI	GATC	4 cut(s)	188, 231, 270, 291
MflI	RGATCY	2 cut(s)	231, 291
MlsI	TGGCCA	1 cut(s)	159
MluCI	AATT	1 cut(s)	62
MluNI	TGGCCA	1 cut(s)	159
MnlI	CCTC	9 cut(s)	38, 78, 80, 81, 190, 222, 235, 250, 270
Mox20I	TGGCCA	1 cut(s)	159
MscI	TGGCCA	1 cut(s)	159
MseI	TTAA	1 cut(s)	313
Msp20I	TGGCCA	1 cut(s)	159
MspA1I	CMGCKG	1 cut(s)	194
MspI	CCGG	1 cut(s)	74
MwoI	GCNNNNNNNGC	1 cut(s)	47
NdeI	CATATG	1 cut(s)	238
NdeII	GATC	4 cut(s)	188, 231, 270, 291
NlaIII	CATG	2 cut(s)	139, 164
NlaIV	GGNNCC	2 cut(s)	81, 233
PaeR7I	CTCGAG	1 cut(s)	42
PkrI	GCNGC	1 cut(s)	180
PspN4I	GGNNCC	2 cut(s)	81, 233
PspPI	GGNCC	1 cut(s)	279
PspXI	VCTCGAGB	1 cut(s)	42
PsuI	RGATCY	2 cut(s)	231, 291
PvuII	CAGCTG	1 cut(s)	194
SaqAI	TTAA	1 cut(s)	313
SatI	GCNGC	1 cut(s)	179
Sau3AI	GATC	4 cut(s)	188, 231, 270, 291
Sau96I	GGNCC	1 cut(s)	279
SetI	ASST	8 cut(s)	24, 52, 85, 91, 180, 196, 281, 303
Sfr274I	CTCGAG	1 cut(s)	42
SinI	GGWCC	1 cut(s)	279
SlaI	CTCGAG	1 cut(s)	42
SmlI	CTYRAG	1 cut(s)	42
SmoI	CTYRAG	1 cut(s)	42
Sse9I	AATT	1 cut(s)	62
SspMI	CTAG	2 cut(s)	84, 126
StyI	CCWWGG	1 cut(s)	246
TaqI	TCGA	1 cut(s)	43
TasI	AATT	1 cut(s)	62
Tru1I	TTAA	1 cut(s)	313
Tru9I	TTAA	1 cut(s)	313
TseI	GCWGC	1 cut(s)	178
TspDTI	ATGAA	2 cut(s)	22, 124
VpaK11BI	GGWCC	1 cut(s)	279
XapI	RAATTY	1 cut(s)	62
XhoI	CTCGAG	1 cut(s)	42
XspI	CTAG	2 cut(s)	84, 126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.