Rh2AG454000

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0010585
Physical Location & Seq
Forward (+)
66806258 .. 66806764
507 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG454000.1

Sequence Viewer

Length: 321 bp
ATGGGGATTAGAGGCAGTAAGTTGAGCCAGATTATGGGAGTGAACAAGCGACTGAGATCGAGCACTCCAGTTACGACTCCTAGAGGTTATGTGCCTGTTTGTGTCGGAGTCGATGGTGATTTTCGGCGGTTCATGGTTCATACCAAATTGCTTGGACATCAAGAATTTATGGAGCTGCTGTATAGTTCAGCTGAGGAATATGGTTTCTGCAATGATGGGGTTTTAAGGATCCCATATGAAGCTAAGGATTTTGAGGAGTACTGGATGATCAAAAAGTCCAAACCCAAGGTTTTCAAGGTTAAACAATCTAGCAAGCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

106

Amino Acids

12.2

Weight (kDa)

9.58

Isoelectric Point (pI)

37.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 19 - 87 1e-15 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 34
AciI CCGC 1 cut(s) 127
AclWI GGATC 2 cut(s) 223, 236
AcsI RAATTY 1 cut(s) 164
AfaI GTAC 1 cut(s) 260
AfiI CCNNNNNNNGG 1 cut(s) 34
AgsI TTSAA 1 cut(s) 295
AluBI AGCT 4 cut(s) 175, 191, 242, 316
AluI AGCT 4 cut(s) 175, 191, 242, 316
Alw21I GWGCWC 1 cut(s) 65
AlwI GGATC 2 cut(s) 223, 236
ApeKI GCWGC 1 cut(s) 175
ApoI RAATTY 1 cut(s) 164
AsuHPI GGTGA 1 cut(s) 128
BamHI GGATCC 1 cut(s) 228
Bbv12I GWGCWC 1 cut(s) 65
BbvCI CCTCAGC 1 cut(s) 192
BbvI GCAGC 1 cut(s) 162
BccI CCATC 2 cut(s) 107, 209
BclI TGATCA 1 cut(s) 267
BfaI CTAG 3 cut(s) 81, 309, 319
BisI GCNGC 1 cut(s) 176
BlsI GCNGC 1 cut(s) 177
BmcAI AGTACT 1 cut(s) 260
BmiI GGNNCC 1 cut(s) 230
BpmI CTGGAG 1 cut(s) 51
Bpu10I CCTNAGC 2 cut(s) 192, 243
BsaJI CCNNGG 1 cut(s) 285
BsaXI ACNNNNNCTCC 2 cut(s) 164, 194
Bsc4I CCNNNNNNNGG 1 cut(s) 34
Bse1I ACTGG 2 cut(s) 68, 266
Bse3DI GCAATG 1 cut(s) 217
BseDI CCNNGG 1 cut(s) 285
BseGI GGATG 1 cut(s) 270
BseLI CCNNNNNNNGG 1 cut(s) 34
BseMI GCAATG 1 cut(s) 217
BseMII CTCAG 2 cut(s) 44, 183
BseNI ACTGG 2 cut(s) 68, 266
BseRI GAGGAG 1 cut(s) 269
BseXI GCAGC 1 cut(s) 162
BsiHKAI GWGCWC 1 cut(s) 65
BslI CCNNNNNNNGG 1 cut(s) 34
Bsp1286I GDGCHC 1 cut(s) 65
Bsp143I GATC 3 cut(s) 56, 228, 267
BspACI CCGC 1 cut(s) 127
BspCNI CTCAG 2 cut(s) 45, 184
BspLI GGNNCC 1 cut(s) 230
BspPI GGATC 2 cut(s) 223, 236
BsrDI GCAATG 1 cut(s) 217
BsrI ACTGG 2 cut(s) 68, 266
BssECI CCNNGG 1 cut(s) 285
BssMI GATC 3 cut(s) 56, 228, 267
BssT1I CCWWGG 1 cut(s) 285
BstC8I GCNNGC 1 cut(s) 314
BstDEI CTNAG 3 cut(s) 53, 192, 243
BstF5I GGATG 1 cut(s) 270
BstKTI GATC 3 cut(s) 59, 231, 270
BstMBI GATC 3 cut(s) 56, 228, 267
BstV1I GCAGC 1 cut(s) 162
BstX2I RGATCY 1 cut(s) 228
BstYI RGATCY 1 cut(s) 228
BtsCI GGATG 1 cut(s) 270
Cac8I GCNNGC 1 cut(s) 314
Csp6I GTAC 1 cut(s) 259
CviAII CATG 1 cut(s) 133
CviJI RGCY 5 cut(s) 27, 175, 191, 242, 316
CviKI_1 RGCY 5 cut(s) 27, 175, 191, 242, 316
CviQI GTAC 1 cut(s) 259
DdeI CTNAG 3 cut(s) 53, 192, 243
DpnI GATC 3 cut(s) 58, 230, 269
DpnII GATC 3 cut(s) 56, 228, 267
Eco130I CCWWGG 1 cut(s) 285
EcoT14I CCWWGG 1 cut(s) 285
ErhI CCWWGG 1 cut(s) 285
FaeI CATG 1 cut(s) 136
FaiI YATR 9 cut(s) 35, 90, 134, 141, 170, 183, 201, 235, 237
FatI CATG 1 cut(s) 132
FauNDI CATATG 1 cut(s) 235
FbaI TGATCA 1 cut(s) 267
Fnu4HI GCNGC 1 cut(s) 176
FokI GGATG 1 cut(s) 277
Fsp4HI GCNGC 1 cut(s) 176
FspBI CTAG 3 cut(s) 81, 309, 319
GluI GCNGC 1 cut(s) 176
GsuI CTGGAG 1 cut(s) 51
Hin1II CATG 1 cut(s) 136
HinfI GANTC 2 cut(s) 76, 108
HphI GGTGA 1 cut(s) 128
Hpy166II GTNNAC 1 cut(s) 43
Hpy188I TCNGA 1 cut(s) 107
Hpy188III TCNNGA 1 cut(s) 161
Hpy8I GTNNAC 1 cut(s) 43
HpyCH4V TGCA 1 cut(s) 210
HpyF3I CTNAG 3 cut(s) 53, 192, 243
Hsp92II CATG 1 cut(s) 136
Ksp22I TGATCA 1 cut(s) 267
Kzo9I GATC 3 cut(s) 56, 228, 267
LmnI GCTCC 1 cut(s) 172
LpnPI CCDG 4 cut(s) 41, 81, 108, 247
Lsp1109I GCAGC 1 cut(s) 162
MaeI CTAG 3 cut(s) 81, 309, 319
MaeIII GTNAC 1 cut(s) 70
MalI GATC 3 cut(s) 58, 230, 269
MboI GATC 3 cut(s) 56, 228, 267
MflI RGATCY 1 cut(s) 228
MhlI GDGCHC 1 cut(s) 65
MluCI AATT 2 cut(s) 146, 164
MlyI GAGTC 2 cut(s) 70, 117
MmeI TCCRAC 1 cut(s) 85
MnlI CCTC 4 cut(s) 5, 77, 187, 247
MseI TTAA 2 cut(s) 224, 300
MspA1I CMGCKG 1 cut(s) 191
NdeI CATATG 1 cut(s) 235
NdeII GATC 3 cut(s) 56, 228, 267
NlaIII CATG 1 cut(s) 136
NlaIV GGNNCC 1 cut(s) 230
PflMI CCANNNNNTGG 1 cut(s) 34
PkrI GCNGC 1 cut(s) 177
PleI GAGTC 2 cut(s) 70, 116
PpsI GAGTC 2 cut(s) 70, 116
PspN4I GGNNCC 1 cut(s) 230
PsuI RGATCY 1 cut(s) 228
PvuII CAGCTG 1 cut(s) 191
RsaI GTAC 1 cut(s) 260
RsaNI GTAC 1 cut(s) 259
SaqAI TTAA 2 cut(s) 224, 300
SatI GCNGC 1 cut(s) 176
Sau3AI GATC 3 cut(s) 56, 228, 267
ScaI AGTACT 1 cut(s) 260
SchI GAGTC 2 cut(s) 70, 117
SduI GDGCHC 1 cut(s) 65
SetI ASST 7 cut(s) 88, 177, 193, 244, 291, 300, 318
Sse9I AATT 2 cut(s) 146, 164
SsiI CCGC 1 cut(s) 127
SspMI CTAG 3 cut(s) 81, 309, 319
StyI CCWWGG 1 cut(s) 285
TaqI TCGA 2 cut(s) 59, 111
TasI AATT 2 cut(s) 146, 164
TatI WGTACW 1 cut(s) 258
Tru1I TTAA 2 cut(s) 224, 300
Tru9I TTAA 2 cut(s) 224, 300
TseI GCWGC 1 cut(s) 175
TspDTI ATGAA 3 cut(s) 121, 128, 252
Van91I CCANNNNNTGG 1 cut(s) 34
XapI RAATTY 1 cut(s) 164
XspI CTAG 3 cut(s) 81, 309, 319
ZrmI AGTACT 1 cut(s) 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.