pycom09g09420

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0010585
Physical Location & Seq
Reverse (-)
7585742 .. 7586098
357 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g09420.1

Sequence Viewer

Length: 357 bp
ATGAAGAGAGTACTCCGCTATTTGCTAATCGGGGTGAGAAGCAGCAAGTTGTTGAGCCAGTTCATCGGAGCTCCAGGAGTGAAAAGACTGAAGAGTCCTTCAATGACACTAAAAGGTTATGTGCCTGTTTGTGTTGATGTAGATGGTTACACGAAGCGTTTTATAGTTCATACTACATTACTCCGCCATACAGAGTTCTTGGAGTTGTTGTATAAGTCAGCGGAGGAATATGACTTTTGCAACGATGGGGTCTTGAGGATTCCATGTGAAGCCAAGGATTTTGAGGAGTATTGGATGACCAAAACGTCCAAACCCAAGATTTATAAGGTTGAACCGGTTCAACTAGTCTGCTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

119

Amino Acids

13.67

Weight (kDa)

9.11

Isoelectric Point (pI)

38.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 31 - 97 1.4e-15 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 324
AasI GACNNNNNNGTC 2 cut(s) 93, 304
AciI CCGC 3 cut(s) 16, 184, 221
AcuI CTGAAG 1 cut(s) 110
AfaI GTAC 1 cut(s) 12
AgeI ACCGGT 1 cut(s) 334
AgsI TTSAA 3 cut(s) 102, 332, 341
AhlI ACTAGT 1 cut(s) 343
AjnI CCWGG 1 cut(s) 73
AluBI AGCT 1 cut(s) 71
AluI AGCT 1 cut(s) 71
Alw21I GWGCWC 1 cut(s) 73
ApeKI GCWGC 1 cut(s) 42
AsiGI ACCGGT 1 cut(s) 334
Asp700I GAANNNNTTC 1 cut(s) 336
AsuHPI GGTGA 1 cut(s) 46
BanII GRGCYC 1 cut(s) 73
Bbv12I GWGCWC 1 cut(s) 73
BbvI GCAGC 1 cut(s) 54
BccI CCATC 2 cut(s) 137, 239
BciT130I CCWGG 1 cut(s) 75
BcuI ACTAGT 1 cut(s) 343
BfaI CTAG 1 cut(s) 344
BisI GCNGC 1 cut(s) 43
BlsI GCNGC 1 cut(s) 44
BmcAI AGTACT 1 cut(s) 12
Bme1390I CCNGG 1 cut(s) 75
BmrFI CCNGG 1 cut(s) 75
BpmI CTGGAG 1 cut(s) 57
BpuEI CTTGAG 1 cut(s) 274
BsaJI CCNNGG 1 cut(s) 273
BsaWI WCCGGW 1 cut(s) 334
BsaXI ACNNNNNCTCC 2 cut(s) 194, 224
Bse118I RCCGGY 1 cut(s) 334
Bse1I ACTGG 1 cut(s) 58
BseBI CCWGG 1 cut(s) 75
BseDI CCNNGG 1 cut(s) 273
BseGI GGATG 1 cut(s) 300
BseNI ACTGG 1 cut(s) 58
BseRI GAGGAG 1 cut(s) 299
BseXI GCAGC 1 cut(s) 54
BshTI ACCGGT 1 cut(s) 334
BsiHKAI GWGCWC 1 cut(s) 73
BsiSI CCGG 1 cut(s) 335
Bsp1286I GDGCHC 1 cut(s) 73
BspACI CCGC 3 cut(s) 16, 184, 221
BsrFI RCCGGY 1 cut(s) 334
BsrI ACTGG 1 cut(s) 58
BssAI RCCGGY 1 cut(s) 334
BssECI CCNNGG 1 cut(s) 273
BssT1I CCWWGG 1 cut(s) 273
Bst2UI CCWGG 1 cut(s) 75
Bst6I CTCTTC 1 cut(s) 86
BstF5I GGATG 1 cut(s) 300
BstNI CCWGG 1 cut(s) 75
BstSCI CCNGG 1 cut(s) 73
BstV1I GCAGC 1 cut(s) 54
BtsCI GGATG 1 cut(s) 300
Cfr10I RCCGGY 1 cut(s) 334
Csp6I GTAC 1 cut(s) 11
CspAI ACCGGT 1 cut(s) 334
CviAII CATG 1 cut(s) 264
CviJI RGCY 3 cut(s) 57, 71, 272
CviKI_1 RGCY 3 cut(s) 57, 71, 272
CviQI GTAC 1 cut(s) 11
DrdI GACNNNNNNGTC 2 cut(s) 93, 304
DseDI GACNNNNNNGTC 2 cut(s) 93, 304
Eam1104I CTCTTC 1 cut(s) 86
EarI CTCTTC 1 cut(s) 86
EciI GGCGGA 1 cut(s) 173
Ecl136II GAGCTC 1 cut(s) 71
Eco130I CCWWGG 1 cut(s) 273
Eco24I GRGCYC 1 cut(s) 73
Eco53kI GAGCTC 1 cut(s) 71
Eco57I CTGAAG 1 cut(s) 110
EcoICRI GAGCTC 1 cut(s) 71
EcoRII CCWGG 1 cut(s) 73
EcoT14I CCWWGG 1 cut(s) 273
EcoT38I GRGCYC 1 cut(s) 73
ErhI CCWWGG 1 cut(s) 273
FaeI CATG 1 cut(s) 267
FaiI YATR 8 cut(s) 120, 164, 171, 189, 213, 231, 265, 324
FatI CATG 1 cut(s) 263
Fnu4HI GCNGC 1 cut(s) 43
FokI GGATG 1 cut(s) 307
FriOI GRGCYC 1 cut(s) 73
Fsp4HI GCNGC 1 cut(s) 43
FspBI CTAG 1 cut(s) 344
GluI GCNGC 1 cut(s) 43
GsuI CTGGAG 1 cut(s) 57
HapII CCGG 1 cut(s) 335
Hin1II CATG 1 cut(s) 267
HinfI GANTC 2 cut(s) 94, 259
HpaII CCGG 1 cut(s) 335
HphI GGTGA 1 cut(s) 46
Hpy188I TCNGA 1 cut(s) 68
Hpy188III TCNNGA 1 cut(s) 253
HpyAV CCTTC 1 cut(s) 108
HpyCH4IV ACGT 1 cut(s) 305
HpyCH4V TGCA 1 cut(s) 240
HpySE526I ACGT 1 cut(s) 305
Hsp92II CATG 1 cut(s) 267
LmnI GCTCC 2 cut(s) 68, 76
LpnPI CCDG 5 cut(s) 60, 71, 87, 138, 348
Lsp1109I GCAGC 1 cut(s) 54
MaeI CTAG 1 cut(s) 344
MaeII ACGT 1 cut(s) 305
MaeIII GTNAC 1 cut(s) 146
MboII GAAGA 2 cut(s) 16, 103
MhlI GDGCHC 1 cut(s) 73
MlyI GAGTC 1 cut(s) 103
MnlI CCTC 3 cut(s) 217, 249, 277
MroXI GAANNNNTTC 1 cut(s) 336
MspA1I CMGCKG 1 cut(s) 221
MspI CCGG 1 cut(s) 335
MspR9I CCNGG 1 cut(s) 75
MvaI CCWGG 1 cut(s) 75
NlaIII CATG 1 cut(s) 267
PdmI GAANNNNTTC 1 cut(s) 336
PfeI GAWTC 1 cut(s) 259
PfoI TCCNGGA 1 cut(s) 73
PinAI ACCGGT 1 cut(s) 334
PkrI GCNGC 1 cut(s) 44
PleI GAGTC 1 cut(s) 102
PpsI GAGTC 1 cut(s) 102
PsiI TTATAA 1 cut(s) 324
Psp124BI GAGCTC 1 cut(s) 73
Psp6I CCWGG 1 cut(s) 73
PspGI CCWGG 1 cut(s) 73
RsaI GTAC 1 cut(s) 12
RsaNI GTAC 1 cut(s) 11
SacI GAGCTC 1 cut(s) 73
SatI GCNGC 1 cut(s) 43
ScaI AGTACT 1 cut(s) 12
SchI GAGTC 1 cut(s) 103
ScrFI CCNGG 1 cut(s) 75
SduI GDGCHC 1 cut(s) 73
SetI ASST 4 cut(s) 73, 118, 308, 330
SmlI CTYRAG 1 cut(s) 253
SmoI CTYRAG 1 cut(s) 253
SpeI ACTAGT 1 cut(s) 343
SsiI CCGC 3 cut(s) 16, 184, 221
SspMI CTAG 1 cut(s) 344
SstI GAGCTC 1 cut(s) 73
StyD4I CCNGG 1 cut(s) 73
StyI CCWWGG 1 cut(s) 273
TaiI ACGT 1 cut(s) 308
TatI WGTACW 1 cut(s) 10
TfiI GAWTC 1 cut(s) 259
TseI GCWGC 1 cut(s) 42
TspDTI ATGAA 3 cut(s) 17, 52, 158
XmnI GAANNNNTTC 1 cut(s) 336
XspI CTAG 1 cut(s) 344
ZrmI AGTACT 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.