pycom09g01500

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0010585
Physical Location & Seq
Reverse (-)
1188592 .. 1188927
336 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g01500.1

Sequence Viewer

Length: 336 bp
ATGAAGAGAGTGCTTTGCTATTTGCTAATGGGAGTGAGAAGAAGCAGTAAATTGAGCCAGTTAATTGGAGCGAAAAGACTGAAAAGTTCTCCTTCTACAACACCGAAGCGTTACGAACTTACGTGCCTGTTTGTGGATGGTGACACTAAGTGTTTCATGATTCATACCAAGTTGCTCCGTCATGCAGAGTTCTTGAAACTCCTATATAGATCAGCTGAGGAATATGGGTTTTGCAATGATGGGGTTTTGAGGATTCCATACGAAGCCAAGGATTTTGAAGAGTATTGGATGATCAAGATGCGCAAACCTAATATTTACAGGGTTCAACCAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

112

Amino Acids

13.16

Weight (kDa)

9.66

Isoelectric Point (pI)

51.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 24 - 95 8.7e-11 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 302
AdeI CACNNNGTG 1 cut(s) 150
AfiI CCNNNNNNNGG 1 cut(s) 133
AgsI TTSAA 3 cut(s) 196, 278, 326
AluBI AGCT 1 cut(s) 215
AluI AGCT 1 cut(s) 215
AspLEI GCGC 1 cut(s) 303
AsuHPI GGTGA 1 cut(s) 152
BbvCI CCTCAGC 1 cut(s) 216
BccI CCATC 2 cut(s) 131, 233
BclI TGATCA 1 cut(s) 291
BmsI GCATC 1 cut(s) 288
Bpu10I CCTNAGC 1 cut(s) 216
BsaAI YACGTR 1 cut(s) 123
BsaJI CCNNGG 1 cut(s) 267
Bsc4I CCNNNNNNNGG 1 cut(s) 133
Bse1I ACTGG 2 cut(s) 58, 329
Bse3DI GCAATG 1 cut(s) 241
BseDI CCNNGG 1 cut(s) 267
BseGI GGATG 2 cut(s) 142, 294
BseLI CCNNNNNNNGG 1 cut(s) 133
BseMI GCAATG 1 cut(s) 241
BseMII CTCAG 1 cut(s) 207
BseNI ACTGG 2 cut(s) 58, 329
BslI CCNNNNNNNGG 1 cut(s) 133
Bsp143I GATC 2 cut(s) 209, 291
BspCNI CTCAG 1 cut(s) 208
BspHI TCATGA 1 cut(s) 156
BsrDI GCAATG 1 cut(s) 241
BsrI ACTGG 2 cut(s) 58, 329
BssECI CCNNGG 1 cut(s) 267
BssMI GATC 2 cut(s) 209, 291
BssT1I CCWWGG 1 cut(s) 267
Bst6I CTCTTC 1 cut(s) 273
BstBAI YACGTR 1 cut(s) 123
BstDEI CTNAG 2 cut(s) 147, 216
BstF5I GGATG 2 cut(s) 142, 294
BstHHI GCGC 1 cut(s) 303
BstKTI GATC 2 cut(s) 212, 294
BstMBI GATC 2 cut(s) 209, 291
BstXI CCANNNNNNTGG 1 cut(s) 65
BtsCI GGATG 2 cut(s) 142, 294
CciI TCATGA 1 cut(s) 156
CfoI GCGC 1 cut(s) 303
CviAII CATG 2 cut(s) 157, 182
CviJI RGCY 3 cut(s) 57, 215, 266
CviKI_1 RGCY 3 cut(s) 57, 215, 266
DdeI CTNAG 2 cut(s) 147, 216
DpnI GATC 2 cut(s) 211, 293
DpnII GATC 2 cut(s) 209, 291
DraIII CACNNNGTG 1 cut(s) 150
Eam1104I CTCTTC 1 cut(s) 273
EarI CTCTTC 1 cut(s) 273
Eco130I CCWWGG 1 cut(s) 267
EcoT14I CCWWGG 1 cut(s) 267
ErhI CCWWGG 1 cut(s) 267
FaeI CATG 2 cut(s) 160, 185
FaiI YATR 7 cut(s) 158, 165, 183, 205, 207, 225, 259
FalI AAGNNNNNCTT 2 cut(s) 76, 108
FatI CATG 2 cut(s) 156, 181
FbaI TGATCA 1 cut(s) 291
FokI GGATG 2 cut(s) 149, 301
FspI TGCGCA 1 cut(s) 302
GlaI GCGC 1 cut(s) 302
HhaI GCGC 1 cut(s) 303
Hin1II CATG 2 cut(s) 160, 185
Hin6I GCGC 1 cut(s) 301
HinP1I GCGC 1 cut(s) 301
HinfI GANTC 2 cut(s) 160, 253
HphI GGTGA 1 cut(s) 152
Hpy188III TCNNGA 3 cut(s) 157, 193, 295
HpyAV CCTTC 1 cut(s) 102
HpyCH4IV ACGT 1 cut(s) 122
HpyCH4V TGCA 2 cut(s) 185, 234
HpyF3I CTNAG 2 cut(s) 147, 216
HpySE526I ACGT 1 cut(s) 122
Hsp92II CATG 2 cut(s) 160, 185
HspAI GCGC 1 cut(s) 301
Ksp22I TGATCA 1 cut(s) 291
Kzo9I GATC 2 cut(s) 209, 291
LmnI GCTCC 2 cut(s) 68, 180
LpnPI CCDG 3 cut(s) 71, 140, 304
LweI GCATC 1 cut(s) 288
MaeII ACGT 1 cut(s) 122
MaeIII GTNAC 2 cut(s) 110, 140
MalI GATC 2 cut(s) 211, 293
MboI GATC 2 cut(s) 209, 291
MboII GAAGA 3 cut(s) 16, 51, 290
MluCI AATT 2 cut(s) 50, 63
MnlI CCTC 2 cut(s) 211, 243
MseI TTAA 2 cut(s) 62, 334
MspA1I CMGCKG 1 cut(s) 215
NdeII GATC 2 cut(s) 209, 291
NlaIII CATG 2 cut(s) 160, 185
NmuCI GTSAC 1 cut(s) 140
NsbI TGCGCA 1 cut(s) 302
PagI TCATGA 1 cut(s) 156
PfeI GAWTC 2 cut(s) 160, 253
Ppu21I YACGTR 1 cut(s) 123
PvuII CAGCTG 1 cut(s) 215
SaqAI TTAA 2 cut(s) 62, 334
Sau3AI GATC 2 cut(s) 209, 291
SetI ASST 3 cut(s) 125, 217, 310
SfaNI GCATC 1 cut(s) 288
Sse9I AATT 2 cut(s) 50, 63
SspI AATATT 1 cut(s) 313
StyI CCWWGG 1 cut(s) 267
TaiI ACGT 1 cut(s) 125
TasI AATT 2 cut(s) 50, 63
TfiI GAWTC 2 cut(s) 160, 253
Tru1I TTAA 2 cut(s) 62, 334
Tru9I TTAA 2 cut(s) 62, 334
TseFI GTSAC 1 cut(s) 140
Tsp45I GTSAC 1 cut(s) 140
TspDTI ATGAA 3 cut(s) 17, 145, 152
TspGWI ACGGA 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.