Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0010585

Physical Location & Seq

Genomic Coordinates Forward (+)

50778814 .. 50779845

Gene Structure 1032 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0397500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGAGTCCTTACGACGGGGAAGAGAAACAATTATGTCATAGTGATACAGAGGTCCAATTTCGGAAGCTCGGGCAAGAAAAGAAGGAGACCAAGAATAAGATTCAGTTTAAGGGAATAACCAAGATGGCTGACAAAAGTACCCAAAAATCTGAAGTAGATAGTAACAAGGCTGATGAACAACAACGCCCGAGGCTGACTTCTACAAATAAATGTGAATGTCCATTCTTATTAAAAGCCTTTAATATTGGTAAGGATGAGTGGGTACTTGAGGTTGCTTGCGGAATCCACAATCATGTTGCCCCATCATATCTAGAAGGTCATTCCTATGCAGGGCGACTATCTAAAGAAGAACATGAGTTGTTGGTAGATAAGTCTAAGCGTTTAATAAGACCCAAGGATATATTGACTGCCGTAAAGAGCCGAGATCCAAGTAATACATCAACGATGAGAACTATATACAATGCTAGGTATTTTGCTCGAATTATCGCTAGAGCAGGCAGAACTCAAATGCAACAATTACTAAAGAATTTGCGCGATCATCATTATATTGAGCATCATAGAAGCGAAGATCACGTGGTCACTGATTTGTTTTGGTGTCATCCATTCAGTCTTCAAATGCTACGTACATTCCCACATGTACTTATCATGGATTGCACCTATAAGATAAACAGGTATCGTTTTCCACTTTTTGAGATTGTGGGTATTACATGCACTGAGCAAACTTTCAATGTTGCGTTTGTTTACATGTCAAAGGAGGCAAAAGATAATTACAGATGGGCACCGAGTAGGTTAAGAACACTTATGAATGAGGATTCTATGCCTGGGGTAATTGTCACTGATCTGGAATTGGCACTTATGAAAGCCACTGAAAATGTCTTTCCCGATACTCATCAGATTTTATGTAAGTGGCACATTGGTAAGAATGTGATGAGAAAATGCAAAGGAAAATTGACAACAAAAGAAGGGTGGGAAGCATTTAATAATGATTGGCATAGCTTGGTGGATTGTAGCTCTGAGGACGAGTATGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Auxin_inducible

Protein Analysis

343

Amino Acids

40.04

Weight (kDa)

8.56

Isoelectric Point (pI)

50.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ZSWIM1-3_RNaseH-like	PF21056	189 - 298	8.2e-11	Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain
MULE	PF10551	213 - 308	5.9e-24	MULE transposase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010585)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g35400
malus_domestica	MD09G1089100.v1.1 MD09G1170600.v1.1 MD09G1176000.v1.1 MD09G1176100.v1.1
prunus_persica	Prupe.3G035100_v2.0.a1
pyrus_communis	pycom09g01500 pycom09g08830 pycom09g09410 pycom09g09420 pycom09g10770
rosa_chinensis	RchiOBHm_Chr2g0146931
rosa_laevigata	RLG00000020227
rosa_multiflora	Rmu_sc0000566.1_g000022
rosa_roxburghii	Rroxscaffold_2G00099850
rosa_rugosa	Rorug02G0397500
rosa_samantha	Rh2AG454000 Rh2BG466700 Rh2CG441100 Rh2DG475600
rosa_wichuraiana	Rw2G037070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	778
AccII	CGCG	1 cut(s)	534
AciI	CCGC	1 cut(s)	279
AclWI	GGATC	1 cut(s)	419
AcsI	RAATTY	1 cut(s)	526
AcuI	CTGAAG	1 cut(s)	171
AcvI	CACGTG	1 cut(s)	574
AfaI	GTAC	4 cut(s)	139, 264, 625, 639
AfiI	CCNNNNNNNGG	2 cut(s)	14, 330
AflIII	ACRYGT	2 cut(s)	634, 744
AgsI	TTSAA	2 cut(s)	614, 727
AjnI	CCWGG	1 cut(s)	820
AluBI	AGCT	3 cut(s)	67, 996, 1011
AluI	AGCT	3 cut(s)	67, 996, 1011
Alw26I	GTCTC	1 cut(s)	80
AlwI	GGATC	1 cut(s)	419
Ama87I	CYCGRG	2 cut(s)	68, 187
ApoI	RAATTY	1 cut(s)	526
AspLEI	GCGC	1 cut(s)	534
AspS9I	GGNCC	1 cut(s)	52
AvaI	CYCGRG	2 cut(s)	68, 187
AvaII	GGWCC	1 cut(s)	52
BaeGI	GKGCMC	1 cut(s)	781
BaeI	ACNNNNGTAYC	4 cut(s)	36, 69, 121, 154
BanI	GGYRCC	1 cut(s)	778
BbrPI	CACGTG	1 cut(s)	574
BbsI	GAAGAC	1 cut(s)	602
BccI	CCATC	3 cut(s)	118, 310, 768
BceAI	ACGGC	1 cut(s)	395
BciT130I	CCWGG	1 cut(s)	822
BcoDI	GTCTC	1 cut(s)	80
BfaI	CTAG	3 cut(s)	311, 465, 489
Bme1390I	CCNGG	1 cut(s)	822
Bme18I	GGWCC	1 cut(s)	52
BmeT110I	CYCGRG	2 cut(s)	68, 187
BmgT120I	GGNCC	1 cut(s)	52
BmiI	GGNNCC	1 cut(s)	780
BmrFI	CCNGG	1 cut(s)	822
BmsI	GCATC	1 cut(s)	562
BpiI	GAAGAC	1 cut(s)	602
BpuEI	CTTGAG	1 cut(s)	287
BsaAI	YACGTR	2 cut(s)	574, 623
BsaBI	GATNNNNATC	1 cut(s)	888
BsaI	GGTCTC	1 cut(s)	80
BsaJI	CCNNGG	3 cut(s)	188, 393, 821
Bsc4I	CCNNNNNNNGG	2 cut(s)	14, 330
Bse8I	GATNNNNATC	1 cut(s)	888
BseBI	CCWGG	1 cut(s)	822
BseDI	CCNNGG	3 cut(s)	188, 393, 821
BseGI	GGATG	2 cut(s)	259, 598
BseJI	GATNNNNATC	1 cut(s)	888
BseLI	CCNNNNNNNGG	2 cut(s)	14, 330
BseMII	CTCAG	2 cut(s)	705, 1005
BseSI	GKGCMC	1 cut(s)	781
Bsh1236I	CGCG	1 cut(s)	534
BshNI	GGYRCC	1 cut(s)	778
BsiHKCI	CYCGRG	2 cut(s)	68, 187
BslI	CCNNNNNNNGG	2 cut(s)	14, 330
BsmAI	GTCTC	1 cut(s)	80
Bso31I	GGTCTC	1 cut(s)	80
BsoBI	CYCGRG	2 cut(s)	68, 187
Bsp1286I	GDGCHC	1 cut(s)	781
Bsp143I	GATC	4 cut(s)	424, 535, 568, 838
BspACI	CCGC	1 cut(s)	279
BspCNI	CTCAG	2 cut(s)	706, 1006
BspFNI	CGCG	1 cut(s)	534
BspLI	GGNNCC	1 cut(s)	780
BspPI	GGATC	1 cut(s)	419
BspT107I	GGYRCC	1 cut(s)	778
BspTNI	GGTCTC	1 cut(s)	80
BssECI	CCNNGG	3 cut(s)	188, 393, 821
BssMI	GATC	4 cut(s)	424, 535, 568, 838
BssT1I	CCWWGG	1 cut(s)	393
Bst2UI	CCWGG	1 cut(s)	822
Bst6I	CTCTTC	1 cut(s)	15
BstBAI	YACGTR	2 cut(s)	574, 623
BstC8I	GCNNGC	2 cut(s)	277, 496
BstDEI	CTNAG	3 cut(s)	375, 714, 1014
BstF5I	GGATG	2 cut(s)	259, 598
BstFNI	CGCG	1 cut(s)	534
BstHHI	GCGC	1 cut(s)	534
BstKTI	GATC	4 cut(s)	427, 538, 571, 841
BstMAI	GTCTC	1 cut(s)	80
BstMBI	GATC	4 cut(s)	424, 535, 568, 838
BstNI	CCWGG	1 cut(s)	822
BstNSI	RCATGY	3 cut(s)	638, 711, 748
BstSCI	CCNGG	1 cut(s)	820
BstSLI	GKGCMC	1 cut(s)	781
BstSNI	TACGTA	1 cut(s)	623
BstUI	CGCG	1 cut(s)	534
BstV2I	GAAGAC	1 cut(s)	602
BstX2I	RGATCY	1 cut(s)	424
BstYI	RGATCY	1 cut(s)	424
BtsCI	GGATG	2 cut(s)	259, 598
BtsIMutI	CAGTG	4 cut(s)	579, 711, 834, 864
Cac8I	GCNNGC	2 cut(s)	277, 496
CfoI	GCGC	1 cut(s)	534
Cfr13I	GGNCC	1 cut(s)	52
Csp6I	GTAC	4 cut(s)	138, 263, 624, 638
CviAII	CATG	6 cut(s)	293, 353, 635, 646, 708, 745
CviJI	RGCY	9 cut(s)	67, 128, 170, 193, 236, 420, 863, 996, 1011
CviKI_1	RGCY	9 cut(s)	67, 128, 170, 193, 236, 420, 863, 996, 1011
CviQI	GTAC	4 cut(s)	138, 263, 624, 638
DdeI	CTNAG	3 cut(s)	375, 714, 1014
DpnI	GATC	4 cut(s)	426, 537, 570, 840
DpnII	GATC	4 cut(s)	424, 535, 568, 838
Eam1104I	CTCTTC	1 cut(s)	15
EarI	CTCTTC	1 cut(s)	15
Eco105I	TACGTA	1 cut(s)	623
Eco130I	CCWWGG	1 cut(s)	393
Eco31I	GGTCTC	1 cut(s)	80
Eco47I	GGWCC	1 cut(s)	52
Eco57I	CTGAAG	1 cut(s)	171
Eco72I	CACGTG	1 cut(s)	574
Eco88I	CYCGRG	2 cut(s)	68, 187
EcoRII	CCWGG	1 cut(s)	820
EcoT14I	CCWWGG	1 cut(s)	393
ErhI	CCWWGG	1 cut(s)	393
FaeI	CATG	6 cut(s)	296, 356, 638, 649, 711, 748
FatI	CATG	6 cut(s)	292, 352, 634, 645, 707, 744
FokI	GGATG	2 cut(s)	266, 585
FspBI	CTAG	3 cut(s)	311, 465, 489
GlaI	GCGC	1 cut(s)	533
HhaI	GCGC	1 cut(s)	534
Hin1II	CATG	6 cut(s)	296, 356, 638, 649, 711, 748
Hin6I	GCGC	1 cut(s)	532
HinP1I	GCGC	1 cut(s)	532
HinfI	GANTC	4 cut(s)	4, 100, 282, 812
Hpy166II	GTNNAC	1 cut(s)	742
Hpy188I	TCNGA	4 cut(s)	63, 151, 894, 1015
Hpy188III	TCNNGA	3 cut(s)	311, 842, 881
Hpy8I	GTNNAC	1 cut(s)	742
Hpy99I	CGWCG	1 cut(s)	17
HpyAV	CCTTC	3 cut(s)	76, 308, 956
HpyCH4IV	ACGT	2 cut(s)	573, 622
HpyCH4V	TGCA	5 cut(s)	329, 511, 654, 711, 939
HpyF3I	CTNAG	3 cut(s)	375, 714, 1014
HpySE526I	ACGT	2 cut(s)	573, 622
Hsp92II	CATG	6 cut(s)	296, 356, 638, 649, 711, 748
HspAI	GCGC	1 cut(s)	532
Kzo9I	GATC	4 cut(s)	424, 535, 568, 838
LpnPI	CCDG	6 cut(s)	315, 480, 655, 807, 827, 834
LweI	GCATC	1 cut(s)	562
MaeI	CTAG	3 cut(s)	311, 465, 489
MaeII	ACGT	2 cut(s)	573, 622
MaeIII	GTNAC	3 cut(s)	161, 577, 832
MalI	GATC	4 cut(s)	426, 537, 570, 840
MboI	GATC	4 cut(s)	424, 535, 568, 838
MboII	GAAGA	4 cut(s)	32, 359, 578, 602
MflI	RGATCY	1 cut(s)	424
MhlI	GDGCHC	1 cut(s)	781
MluCI	AATT	9 cut(s)	29, 56, 480, 515, 526, 766, 828, 845, 947
MlyI	GAGTC	1 cut(s)	13
MnlI	CCTC	6 cut(s)	43, 183, 262, 748, 802, 1009
MseI	TTAA	6 cut(s)	108, 230, 240, 383, 791, 978
MslI	CAYNNNNRTG	2 cut(s)	291, 324
MspR9I	CCNGG	1 cut(s)	822
MvaI	CCWGG	1 cut(s)	822
MvnI	CGCG	1 cut(s)	534
NdeII	GATC	4 cut(s)	424, 535, 568, 838
NlaIII	CATG	6 cut(s)	296, 356, 638, 649, 711, 748
NlaIV	GGNNCC	1 cut(s)	780
NmeAIII	GCCGAG	1 cut(s)	446
NmuCI	GTSAC	2 cut(s)	577, 832
NspI	RCATGY	3 cut(s)	638, 711, 748
PciI	ACATGT	2 cut(s)	634, 744
PfeI	GAWTC	3 cut(s)	100, 282, 812
PleI	GAGTC	1 cut(s)	12
PmaCI	CACGTG	1 cut(s)	574
PmlI	CACGTG	1 cut(s)	574
PpsI	GAGTC	1 cut(s)	12
Ppu21I	YACGTR	2 cut(s)	574, 623
PscI	ACATGT	2 cut(s)	634, 744
Psp6I	CCWGG	1 cut(s)	820
PspCI	CACGTG	1 cut(s)	574
PspGI	CCWGG	1 cut(s)	820
PspN4I	GGNNCC	1 cut(s)	780
PspPI	GGNCC	1 cut(s)	52
PsuI	RGATCY	1 cut(s)	424
RsaI	GTAC	4 cut(s)	139, 264, 625, 639
RsaNI	GTAC	4 cut(s)	138, 263, 624, 638
RseI	CAYNNNNRTG	2 cut(s)	291, 324
SaqAI	TTAA	6 cut(s)	108, 230, 240, 383, 791, 978
Sau3AI	GATC	4 cut(s)	424, 535, 568, 838
Sau96I	GGNCC	1 cut(s)	52
SchI	GAGTC	1 cut(s)	13
ScrFI	CCNGG	1 cut(s)	822
SduI	GDGCHC	1 cut(s)	781
SfaNI	GCATC	1 cut(s)	562
SinI	GGWCC	1 cut(s)	52
SmiMI	CAYNNNNRTG	2 cut(s)	291, 324
SmlI	CTYRAG	1 cut(s)	266
SmoI	CTYRAG	1 cut(s)	266
SnaBI	TACGTA	1 cut(s)	623
Sse9I	AATT	9 cut(s)	29, 56, 480, 515, 526, 766, 828, 845, 947
SsiI	CCGC	1 cut(s)	279
SspI	AATATT	1 cut(s)	244
SspMI	CTAG	3 cut(s)	311, 465, 489
StyD4I	CCNGG	1 cut(s)	820
StyI	CCWWGG	1 cut(s)	393
TaiI	ACGT	2 cut(s)	576, 625
TaqI	TCGA	1 cut(s)	478
TasI	AATT	9 cut(s)	29, 56, 480, 515, 526, 766, 828, 845, 947
TatI	WGTACW	1 cut(s)	637
TfiI	GAWTC	3 cut(s)	100, 282, 812
Tru1I	TTAA	6 cut(s)	108, 230, 240, 383, 791, 978
Tru9I	TTAA	6 cut(s)	108, 230, 240, 383, 791, 978
TscAI	CASTG	4 cut(s)	586, 718, 841, 871
TseFI	GTSAC	2 cut(s)	577, 832
Tsp45I	GTSAC	2 cut(s)	577, 832
TspDTI	ATGAA	3 cut(s)	189, 818, 872
TspRI	CASTG	4 cut(s)	586, 718, 841, 871
VpaK11BI	GGWCC	1 cut(s)	52
XapI	RAATTY	1 cut(s)	526
XbaI	TCTAGA	1 cut(s)	310
XceI	RCATGY	3 cut(s)	638, 711, 748
XspI	CTAG	3 cut(s)	311, 465, 489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.