MD09G1176100.v1.1

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0010585
Physical Location & Seq
Reverse (-)
15030105 .. 15030461
357 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1176100.v1.1.491

Sequence Viewer

Length: 357 bp
ATGAAGAGAGTACTTTCCTATTTGCTAACAGGGGTGAGAAGCAGCAAGTTGTTGAGCCAGTTGATCGGAGCTCCAGCAGTGAAAAGAGTGAAAAACACTCATTCAATGACACCAAAAGGTTATGTTCCTGTTTGTGTTGGCGTGGATGGGGATACGAAGCGTTTCATGGTTCCTACCACATTGTTTCGCCATGCAGACTTCTCGGAGTTGCTGTATAAGTCAGCTGAGGAATATGGTTTCTGCAACGATGGGGTTTTGAGGATTCCATACGAGGCCAAGGATTTTGAGAATCATTGGATGATCAAAAGGTCCAAACCCAAGATTTATAAGGTTGAACCAGTTCAATTACTCTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

119

Amino Acids

13.48

Weight (kDa)

9.54

Isoelectric Point (pI)

37.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 30 - 97 9e-17 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 327
AfaI GTAC 1 cut(s) 12
AgsI TTSAA 3 cut(s) 105, 335, 344
AluBI AGCT 2 cut(s) 71, 224
AluI AGCT 2 cut(s) 71, 224
Alw21I GWGCWC 1 cut(s) 73
AoxI GGCC 1 cut(s) 273
ApeKI GCWGC 1 cut(s) 42
Asp700I GAANNNNTTC 2 cut(s) 161, 339
AspS9I GGNCC 1 cut(s) 309
AsuHPI GGTGA 1 cut(s) 46
AvaII GGWCC 1 cut(s) 309
BanII GRGCYC 1 cut(s) 73
Bbv12I GWGCWC 1 cut(s) 73
BbvCI CCTCAGC 1 cut(s) 225
BbvI GCAGC 1 cut(s) 54
BccI CCATC 2 cut(s) 140, 242
BcgI CGANNNNNNTGC 2 cut(s) 183, 217
BciVI GTATCC 1 cut(s) 145
BclI TGATCA 1 cut(s) 300
BfuI GTATCC 1 cut(s) 145
BisI GCNGC 1 cut(s) 43
BlsI GCNGC 1 cut(s) 44
BmcAI AGTACT 1 cut(s) 12
Bme18I GGWCC 1 cut(s) 309
BmgT120I GGNCC 1 cut(s) 309
BmiI GGNNCC 1 cut(s) 171
BpmI CTGGAG 1 cut(s) 57
Bpu10I CCTNAGC 1 cut(s) 225
BsaJI CCNNGG 1 cut(s) 276
BsaXI ACNNNNNCTCC 2 cut(s) 197, 227
Bse1I ACTGG 2 cut(s) 58, 338
BseDI CCNNGG 1 cut(s) 276
BseGI GGATG 2 cut(s) 151, 303
BseMII CTCAG 1 cut(s) 216
BseNI ACTGG 2 cut(s) 58, 338
BseXI GCAGC 1 cut(s) 54
BshFI GGCC 1 cut(s) 275
BsiHKAI GWGCWC 1 cut(s) 73
BsnI GGCC 1 cut(s) 275
Bsp1286I GDGCHC 1 cut(s) 73
Bsp143I GATC 2 cut(s) 63, 300
BspANI GGCC 1 cut(s) 275
BspCNI CTCAG 1 cut(s) 217
BspLI GGNNCC 1 cut(s) 171
BsrI ACTGG 2 cut(s) 58, 338
BssECI CCNNGG 1 cut(s) 276
BssMI GATC 2 cut(s) 63, 300
BssT1I CCWWGG 1 cut(s) 276
BstDEI CTNAG 1 cut(s) 225
BstF5I GGATG 2 cut(s) 151, 303
BstKTI GATC 2 cut(s) 66, 303
BstMBI GATC 2 cut(s) 63, 300
BstV1I GCAGC 1 cut(s) 54
BsuI GTATCC 1 cut(s) 145
BsuRI GGCC 1 cut(s) 275
BtsCI GGATG 2 cut(s) 151, 303
BtsI GCAGTG 1 cut(s) 84
BtsIMutI CAGTG 1 cut(s) 84
Cfr13I GGNCC 1 cut(s) 309
Csp6I GTAC 1 cut(s) 11
CviAII CATG 2 cut(s) 166, 191
CviJI RGCY 4 cut(s) 57, 71, 224, 275
CviKI_1 RGCY 4 cut(s) 57, 71, 224, 275
CviQI GTAC 1 cut(s) 11
DdeI CTNAG 1 cut(s) 225
DpnI GATC 2 cut(s) 65, 302
DpnII GATC 2 cut(s) 63, 300
Ecl136II GAGCTC 1 cut(s) 71
Eco130I CCWWGG 1 cut(s) 276
Eco24I GRGCYC 1 cut(s) 73
Eco47I GGWCC 1 cut(s) 309
Eco53kI GAGCTC 1 cut(s) 71
EcoICRI GAGCTC 1 cut(s) 71
EcoT14I CCWWGG 1 cut(s) 276
EcoT38I GRGCYC 1 cut(s) 73
ErhI CCWWGG 1 cut(s) 276
FaeI CATG 2 cut(s) 169, 194
FaiI YATR 7 cut(s) 123, 167, 192, 216, 234, 268, 327
FatI CATG 2 cut(s) 165, 190
FbaI TGATCA 1 cut(s) 300
Fnu4HI GCNGC 1 cut(s) 43
FokI GGATG 2 cut(s) 158, 310
FriOI GRGCYC 1 cut(s) 73
Fsp4HI GCNGC 1 cut(s) 43
GluI GCNGC 1 cut(s) 43
GsuI CTGGAG 1 cut(s) 57
HaeIII GGCC 1 cut(s) 275
Hin1II CATG 2 cut(s) 169, 194
HinfI GANTC 2 cut(s) 262, 289
HphI GGTGA 1 cut(s) 46
Hpy188I TCNGA 2 cut(s) 68, 205
HpyCH4V TGCA 2 cut(s) 194, 243
HpyF3I CTNAG 1 cut(s) 225
Hsp92II CATG 2 cut(s) 169, 194
Ksp22I TGATCA 1 cut(s) 300
Kzo9I GATC 2 cut(s) 63, 300
LmnI GCTCC 2 cut(s) 68, 76
LpnPI CCDG 5 cut(s) 15, 71, 87, 141, 351
Lsp1109I GCAGC 1 cut(s) 54
MalI GATC 2 cut(s) 65, 302
MboI GATC 2 cut(s) 63, 300
MboII GAAGA 1 cut(s) 16
MhlI GDGCHC 1 cut(s) 73
MluCI AATT 1 cut(s) 344
MnlI CCTC 3 cut(s) 220, 252, 265
MroXI GAANNNNTTC 2 cut(s) 161, 339
MspA1I CMGCKG 1 cut(s) 224
NdeII GATC 2 cut(s) 63, 300
NlaIII CATG 2 cut(s) 169, 194
NlaIV GGNNCC 1 cut(s) 171
PdmI GAANNNNTTC 2 cut(s) 161, 339
PfeI GAWTC 2 cut(s) 262, 289
PkrI GCNGC 1 cut(s) 44
PsiI TTATAA 1 cut(s) 327
Psp124BI GAGCTC 1 cut(s) 73
PspN4I GGNNCC 1 cut(s) 171
PspPI GGNCC 1 cut(s) 309
PvuII CAGCTG 1 cut(s) 224
RsaI GTAC 1 cut(s) 12
RsaNI GTAC 1 cut(s) 11
SacI GAGCTC 1 cut(s) 73
SatI GCNGC 1 cut(s) 43
Sau3AI GATC 2 cut(s) 63, 300
Sau96I GGNCC 1 cut(s) 309
ScaI AGTACT 1 cut(s) 12
SduI GDGCHC 1 cut(s) 73
SetI ASST 5 cut(s) 73, 121, 226, 311, 333
SinI GGWCC 1 cut(s) 309
Sse9I AATT 1 cut(s) 344
SstI GAGCTC 1 cut(s) 73
StyI CCWWGG 1 cut(s) 276
TasI AATT 1 cut(s) 344
TatI WGTACW 1 cut(s) 10
TfiI GAWTC 2 cut(s) 262, 289
TscAI CASTG 1 cut(s) 84
TseI GCWGC 1 cut(s) 42
TspDTI ATGAA 2 cut(s) 17, 154
TspRI CASTG 1 cut(s) 84
VpaK11BI GGWCC 1 cut(s) 309
XmnI GAANNNNTTC 2 cut(s) 161, 339
ZrmI AGTACT 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.