MD09G1170600.v1.1

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0010585
Physical Location & Seq
Forward (+)
14396726 .. 14397252
527 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1170600.v1.1.491

Sequence Viewer

Length: 399 bp
ATGGGGGTGAGAAGCAGCAAGTTGTTGAGCCAGTTGATCGGAGCTCAAGGACTGAAAAGACTGAAAAGCTCACCTTCAATGACACCAAAAGGTTATGTACCTGTTTGTGTTGGTGTGGATGGTAATACAAAGCGTTTCATGGTTCATACGACGTTGCTTCGCCATGCAAAGTTCTTGGAGCTGTTGTATAAGTCAGCGGAGGAATATGGTTTTTCTAATGATGGGGTTTTGAGGATTCCATATGAGGCCAGCGATTTTGAAGAGTATTGGATGATCAAAAGTTCTAAACCCAAGATTTACAAGGTTGAACCGTTTAAGGGATTTAATATGCTGATGTCCATTTGCATTGTTCTTCTGGGCTTGTGGAATGAAAATTATGCGCATCCTTTTTCATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

133

Amino Acids

15.02

Weight (kDa)

9.37

Isoelectric Point (pI)

38.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 21 - 89 1.3e-16 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 381
AciI CCGC 1 cut(s) 197
AfaI GTAC 1 cut(s) 99
AfiI CCNNNNNNNGG 1 cut(s) 317
AgsI TTSAA 3 cut(s) 78, 260, 308
AluBI AGCT 3 cut(s) 44, 69, 181
AluI AGCT 3 cut(s) 44, 69, 181
Alw21I GWGCWC 1 cut(s) 46
AoxI GGCC 1 cut(s) 246
ApeKI GCWGC 1 cut(s) 15
AspLEI GCGC 1 cut(s) 382
AsuHPI GGTGA 2 cut(s) 19, 63
BanII GRGCYC 1 cut(s) 46
Bbv12I GWGCWC 1 cut(s) 46
BbvI GCAGC 1 cut(s) 27
BccI CCATC 2 cut(s) 113, 215
BclI TGATCA 1 cut(s) 273
BisI GCNGC 1 cut(s) 16
BlsI GCNGC 1 cut(s) 17
BmsI GCATC 1 cut(s) 391
BpuEI CTTGAG 1 cut(s) 30
BsaXI ACNNNNNCTCC 2 cut(s) 170, 200
Bsc4I CCNNNNNNNGG 1 cut(s) 317
Bse1I ACTGG 1 cut(s) 31
BseGI GGATG 3 cut(s) 124, 276, 382
BseLI CCNNNNNNNGG 1 cut(s) 317
BseNI ACTGG 1 cut(s) 31
BseXI GCAGC 1 cut(s) 27
BshFI GGCC 1 cut(s) 248
BsiHKAI GWGCWC 1 cut(s) 46
BslI CCNNNNNNNGG 1 cut(s) 317
BsnI GGCC 1 cut(s) 248
Bsp1286I GDGCHC 1 cut(s) 46
Bsp143I GATC 2 cut(s) 36, 273
BspACI CCGC 1 cut(s) 197
BspANI GGCC 1 cut(s) 248
BsrI ACTGG 1 cut(s) 31
BssMI GATC 2 cut(s) 36, 273
Bst4CI ACNGT 1 cut(s) 312
Bst6I CTCTTC 1 cut(s) 255
BstC8I GCNNGC 1 cut(s) 250
BstF5I GGATG 3 cut(s) 124, 276, 382
BstHHI GCGC 1 cut(s) 382
BstKTI GATC 2 cut(s) 39, 276
BstMBI GATC 2 cut(s) 36, 273
BstV1I GCAGC 1 cut(s) 27
BsuRI GGCC 1 cut(s) 248
BtsCI GGATG 3 cut(s) 124, 276, 382
Cac8I GCNNGC 1 cut(s) 250
CfoI GCGC 1 cut(s) 382
Csp6I GTAC 1 cut(s) 98
CviAII CATG 2 cut(s) 139, 164
CviJI RGCY 6 cut(s) 30, 44, 69, 181, 248, 360
CviKI_1 RGCY 6 cut(s) 30, 44, 69, 181, 248, 360
CviQI GTAC 1 cut(s) 98
DpnI GATC 2 cut(s) 38, 275
DpnII GATC 2 cut(s) 36, 273
Eam1104I CTCTTC 1 cut(s) 255
EarI CTCTTC 1 cut(s) 255
Ecl136II GAGCTC 1 cut(s) 44
Eco24I GRGCYC 1 cut(s) 46
Eco53kI GAGCTC 1 cut(s) 44
EcoICRI GAGCTC 1 cut(s) 44
EcoT38I GRGCYC 1 cut(s) 46
FaeI CATG 2 cut(s) 142, 167
FalI AAGNNNNNCTT 2 cut(s) 58, 90
FatI CATG 2 cut(s) 138, 163
FauNDI CATATG 1 cut(s) 241
FbaI TGATCA 1 cut(s) 273
Fnu4HI GCNGC 1 cut(s) 16
FokI GGATG 3 cut(s) 131, 283, 369
FriOI GRGCYC 1 cut(s) 46
Fsp4HI GCNGC 1 cut(s) 16
FspAI RTGCGCAY 1 cut(s) 381
FspI TGCGCA 1 cut(s) 381
GlaI GCGC 1 cut(s) 381
GluI GCNGC 1 cut(s) 16
HaeIII GGCC 1 cut(s) 248
HhaI GCGC 1 cut(s) 382
Hin1II CATG 2 cut(s) 142, 167
Hin6I GCGC 1 cut(s) 380
HinP1I GCGC 1 cut(s) 380
HinfI GANTC 1 cut(s) 235
HphI GGTGA 2 cut(s) 19, 63
Hpy188I TCNGA 1 cut(s) 41
Hpy99I CGWCG 1 cut(s) 154
HpyAV CCTTC 1 cut(s) 84
HpyCH4III ACNGT 1 cut(s) 312
HpyCH4IV ACGT 1 cut(s) 152
HpyCH4V TGCA 2 cut(s) 167, 345
HpySE526I ACGT 1 cut(s) 152
Hsp92II CATG 2 cut(s) 142, 167
HspAI GCGC 1 cut(s) 380
Ksp22I TGATCA 1 cut(s) 273
Kzo9I GATC 2 cut(s) 36, 273
LmnI GCTCC 2 cut(s) 41, 178
LpnPI CCDG 4 cut(s) 44, 114, 262, 341
Lsp1109I GCAGC 1 cut(s) 27
LweI GCATC 1 cut(s) 391
MaeII ACGT 1 cut(s) 152
MalI GATC 2 cut(s) 38, 275
MboI GATC 2 cut(s) 36, 273
MboII GAAGA 2 cut(s) 272, 344
MhlI GDGCHC 1 cut(s) 46
MluCI AATT 1 cut(s) 373
MnlI CCTC 3 cut(s) 193, 225, 238
MseI TTAA 2 cut(s) 315, 324
MspA1I CMGCKG 1 cut(s) 197
NdeI CATATG 1 cut(s) 241
NdeII GATC 2 cut(s) 36, 273
NlaIII CATG 2 cut(s) 142, 167
NsbI TGCGCA 1 cut(s) 381
PfeI GAWTC 1 cut(s) 235
PkrI GCNGC 1 cut(s) 17
Psp124BI GAGCTC 1 cut(s) 46
RsaI GTAC 1 cut(s) 99
RsaNI GTAC 1 cut(s) 98
SacI GAGCTC 1 cut(s) 46
SaqAI TTAA 2 cut(s) 315, 324
SatI GCNGC 1 cut(s) 16
Sau3AI GATC 2 cut(s) 36, 273
SduI GDGCHC 1 cut(s) 46
SetI ASST 8 cut(s) 46, 71, 76, 94, 103, 155, 183, 306
SfaNI GCATC 1 cut(s) 391
SmlI CTYRAG 1 cut(s) 45
SmoI CTYRAG 1 cut(s) 45
Sse9I AATT 1 cut(s) 373
SsiI CCGC 1 cut(s) 197
SstI GAGCTC 1 cut(s) 46
TaaI ACNGT 1 cut(s) 312
TaiI ACGT 1 cut(s) 155
TasI AATT 1 cut(s) 373
TfiI GAWTC 1 cut(s) 235
Tru1I TTAA 2 cut(s) 315, 324
Tru9I TTAA 2 cut(s) 315, 324
TseI GCWGC 1 cut(s) 15
TspDTI ATGAA 4 cut(s) 127, 134, 381, 384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.