pycom09g08830

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0010585
Physical Location & Seq
Forward (+)
6953918 .. 6954265
348 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g08830.1

Sequence Viewer

Length: 348 bp
ATGAAAAGAGTACTTTGCTATTTGCTAATGGGGGTGAGAAGCAGCAAGTTGTTGAGCCAGTTGATCGGAGCTCAAGGACTGAAAAGACTGAAAAGCTCACTTTCAATGACACCAAAAGGTTATGTACCTGTTTGTGTTGGTGTGGATGGTAATACAAAGCGTTTCATGGTTCATACGACGTTGCTTCGCCATGCAAAGTTCTTGGAGCTGTTGTATAAGTCAGCGGAGGAATATGGGTTTTCTAATGATGGGGTTTTGAGGATTCCATATGAGGCCAGCGATTTTGAAGAGTATTGGATGATCAAAAGTTATAAACCCAAGATTTACAAGGCTGAACCGTTTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

116

Amino Acids

13.22

Weight (kDa)

9.57

Isoelectric Point (pI)

31.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 31 - 98 2.1e-16 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 312
AciI CCGC 1 cut(s) 224
AfaI GTAC 2 cut(s) 12, 126
AgsI TTSAA 2 cut(s) 105, 287
AluBI AGCT 3 cut(s) 71, 96, 208
AluI AGCT 3 cut(s) 71, 96, 208
Alw21I GWGCWC 1 cut(s) 73
AoxI GGCC 1 cut(s) 273
ApeKI GCWGC 1 cut(s) 42
AsuHPI GGTGA 1 cut(s) 46
BanII GRGCYC 1 cut(s) 73
Bbv12I GWGCWC 1 cut(s) 73
BbvI GCAGC 1 cut(s) 54
BccI CCATC 2 cut(s) 140, 242
BclI TGATCA 1 cut(s) 300
BisI GCNGC 1 cut(s) 43
BlsI GCNGC 1 cut(s) 44
BmcAI AGTACT 1 cut(s) 12
BpuEI CTTGAG 1 cut(s) 57
BsaXI ACNNNNNCTCC 2 cut(s) 197, 227
Bse1I ACTGG 1 cut(s) 58
BseGI GGATG 2 cut(s) 151, 303
BseNI ACTGG 1 cut(s) 58
BseXI GCAGC 1 cut(s) 54
BshFI GGCC 1 cut(s) 275
BsiHKAI GWGCWC 1 cut(s) 73
BsnI GGCC 1 cut(s) 275
Bsp1286I GDGCHC 1 cut(s) 73
Bsp143I GATC 2 cut(s) 63, 300
BspACI CCGC 1 cut(s) 224
BspANI GGCC 1 cut(s) 275
BsrI ACTGG 1 cut(s) 58
BssMI GATC 2 cut(s) 63, 300
Bst4CI ACNGT 1 cut(s) 339
Bst6I CTCTTC 1 cut(s) 282
BstC8I GCNNGC 1 cut(s) 277
BstF5I GGATG 2 cut(s) 151, 303
BstKTI GATC 2 cut(s) 66, 303
BstMBI GATC 2 cut(s) 63, 300
BstV1I GCAGC 1 cut(s) 54
BsuRI GGCC 1 cut(s) 275
BtsCI GGATG 2 cut(s) 151, 303
Cac8I GCNNGC 1 cut(s) 277
Csp6I GTAC 2 cut(s) 11, 125
CviAII CATG 2 cut(s) 166, 191
CviJI RGCY 6 cut(s) 57, 71, 96, 208, 275, 332
CviKI_1 RGCY 6 cut(s) 57, 71, 96, 208, 275, 332
CviQI GTAC 2 cut(s) 11, 125
DpnI GATC 2 cut(s) 65, 302
DpnII GATC 2 cut(s) 63, 300
Eam1104I CTCTTC 1 cut(s) 282
EarI CTCTTC 1 cut(s) 282
Ecl136II GAGCTC 1 cut(s) 71
Eco24I GRGCYC 1 cut(s) 73
Eco53kI GAGCTC 1 cut(s) 71
EcoICRI GAGCTC 1 cut(s) 71
EcoT38I GRGCYC 1 cut(s) 73
FaeI CATG 2 cut(s) 169, 194
FaiI YATR 9 cut(s) 123, 167, 174, 192, 216, 234, 268, 270, 312
FatI CATG 2 cut(s) 165, 190
FauNDI CATATG 1 cut(s) 268
FbaI TGATCA 1 cut(s) 300
Fnu4HI GCNGC 1 cut(s) 43
FokI GGATG 2 cut(s) 158, 310
FriOI GRGCYC 1 cut(s) 73
Fsp4HI GCNGC 1 cut(s) 43
GluI GCNGC 1 cut(s) 43
HaeIII GGCC 1 cut(s) 275
Hin1II CATG 2 cut(s) 169, 194
HinfI GANTC 1 cut(s) 262
HphI GGTGA 1 cut(s) 46
Hpy188I TCNGA 1 cut(s) 68
Hpy99I CGWCG 1 cut(s) 181
HpyCH4III ACNGT 1 cut(s) 339
HpyCH4IV ACGT 1 cut(s) 179
HpyCH4V TGCA 1 cut(s) 194
HpySE526I ACGT 1 cut(s) 179
Hsp92II CATG 2 cut(s) 169, 194
Ksp22I TGATCA 1 cut(s) 300
Kzo9I GATC 2 cut(s) 63, 300
LmnI GCTCC 2 cut(s) 68, 205
LpnPI CCDG 3 cut(s) 71, 141, 289
Lsp1109I GCAGC 1 cut(s) 54
MaeII ACGT 1 cut(s) 179
MalI GATC 2 cut(s) 65, 302
MboI GATC 2 cut(s) 63, 300
MboII GAAGA 1 cut(s) 299
MhlI GDGCHC 1 cut(s) 73
MluCI AATT 1 cut(s) 343
MnlI CCTC 3 cut(s) 220, 252, 265
MseI TTAA 1 cut(s) 342
MspA1I CMGCKG 1 cut(s) 224
NdeI CATATG 1 cut(s) 268
NdeII GATC 2 cut(s) 63, 300
NlaIII CATG 2 cut(s) 169, 194
PfeI GAWTC 1 cut(s) 262
PkrI GCNGC 1 cut(s) 44
PsiI TTATAA 1 cut(s) 312
Psp124BI GAGCTC 1 cut(s) 73
RsaI GTAC 2 cut(s) 12, 126
RsaNI GTAC 2 cut(s) 11, 125
SacI GAGCTC 1 cut(s) 73
SaqAI TTAA 1 cut(s) 342
SatI GCNGC 1 cut(s) 43
Sau3AI GATC 2 cut(s) 63, 300
ScaI AGTACT 1 cut(s) 12
SduI GDGCHC 1 cut(s) 73
SetI ASST 6 cut(s) 73, 98, 121, 130, 182, 210
SmlI CTYRAG 1 cut(s) 72
SmoI CTYRAG 1 cut(s) 72
Sse9I AATT 1 cut(s) 343
SsiI CCGC 1 cut(s) 224
SstI GAGCTC 1 cut(s) 73
TaaI ACNGT 1 cut(s) 339
TaiI ACGT 1 cut(s) 182
TasI AATT 1 cut(s) 343
TatI WGTACW 1 cut(s) 10
TfiI GAWTC 1 cut(s) 262
Tru1I TTAA 1 cut(s) 342
Tru9I TTAA 1 cut(s) 342
TseI GCWGC 1 cut(s) 42
TspDTI ATGAA 3 cut(s) 17, 154, 161
ZrmI AGTACT 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.