Rroxscaffold_2G00099850

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0010585
Physical Location & Seq
Reverse (-)
21618712 .. 21619023
312 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00099850.1

Sequence Viewer

Length: 312 bp
ATGGGGATTAGAGGCAGTAAGTTGAGCCAGATTATTGGAGTGAACAAGAGACTGAGATCGAGCACTCCAGTTATGACTCCTAGAGGTTATGTGCCTGTTTGTGTCGGAGTCGATGGCGATTTTCGGCGGTTCATGGTTCATACCAAATTGCTTGGACATCATGAATTTATGGAGCTGCTGTATAGATCAGCTGAGGAATATGGTTTCTGCAATGATGGGGTTTTAAGGATCCCATATGAAGCTAAGGATTTTGAGGAGTACTGGATGATCAACAAGTCCAAACCAAAGGTTTTCAAGGTTAAACCAATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

103

Amino Acids

11.94

Weight (kDa)

9.51

Isoelectric Point (pI)

32.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 20 - 87 1e-15 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 127
AclWI GGATC 2 cut(s) 223, 236
AcsI RAATTY 1 cut(s) 164
AfaI GTAC 1 cut(s) 260
AgsI TTSAA 1 cut(s) 295
AluBI AGCT 3 cut(s) 175, 191, 242
AluI AGCT 3 cut(s) 175, 191, 242
Alw21I GWGCWC 1 cut(s) 65
Alw26I GTCTC 1 cut(s) 43
AlwI GGATC 2 cut(s) 223, 236
ApeKI GCWGC 1 cut(s) 175
ApoI RAATTY 1 cut(s) 164
BamHI GGATCC 1 cut(s) 228
Bbv12I GWGCWC 1 cut(s) 65
BbvCI CCTCAGC 1 cut(s) 192
BbvI GCAGC 1 cut(s) 162
BccI CCATC 2 cut(s) 107, 209
BclI TGATCA 1 cut(s) 267
BcoDI GTCTC 1 cut(s) 43
BfaI CTAG 2 cut(s) 81, 310
BisI GCNGC 1 cut(s) 176
BlsI GCNGC 1 cut(s) 177
BmcAI AGTACT 1 cut(s) 260
BmiI GGNNCC 1 cut(s) 230
BpmI CTGGAG 1 cut(s) 51
Bpu10I CCTNAGC 2 cut(s) 192, 243
BsaXI ACNNNNNCTCC 2 cut(s) 164, 194
Bse1I ACTGG 2 cut(s) 68, 266
Bse3DI GCAATG 1 cut(s) 217
BseGI GGATG 1 cut(s) 270
BseMI GCAATG 1 cut(s) 217
BseMII CTCAG 2 cut(s) 44, 183
BseNI ACTGG 2 cut(s) 68, 266
BseRI GAGGAG 1 cut(s) 269
BseXI GCAGC 1 cut(s) 162
BsiHKAI GWGCWC 1 cut(s) 65
BsmAI GTCTC 1 cut(s) 43
Bsp1286I GDGCHC 1 cut(s) 65
Bsp143I GATC 4 cut(s) 56, 185, 228, 267
BspACI CCGC 1 cut(s) 127
BspCNI CTCAG 2 cut(s) 45, 184
BspHI TCATGA 1 cut(s) 160
BspLI GGNNCC 1 cut(s) 230
BspPI GGATC 2 cut(s) 223, 236
BsrDI GCAATG 1 cut(s) 217
BsrI ACTGG 2 cut(s) 68, 266
BssMI GATC 4 cut(s) 56, 185, 228, 267
BstDEI CTNAG 3 cut(s) 53, 192, 243
BstF5I GGATG 1 cut(s) 270
BstKTI GATC 4 cut(s) 59, 188, 231, 270
BstMAI GTCTC 1 cut(s) 43
BstMBI GATC 4 cut(s) 56, 185, 228, 267
BstV1I GCAGC 1 cut(s) 162
BstX2I RGATCY 1 cut(s) 228
BstXI CCANNNNNNTGG 1 cut(s) 35
BstYI RGATCY 1 cut(s) 228
BtsCI GGATG 1 cut(s) 270
CciI TCATGA 1 cut(s) 160
Csp6I GTAC 1 cut(s) 259
CviAII CATG 2 cut(s) 133, 161
CviJI RGCY 4 cut(s) 27, 175, 191, 242
CviKI_1 RGCY 4 cut(s) 27, 175, 191, 242
CviQI GTAC 1 cut(s) 259
DdeI CTNAG 3 cut(s) 53, 192, 243
DpnI GATC 4 cut(s) 58, 187, 230, 269
DpnII GATC 4 cut(s) 56, 185, 228, 267
FaeI CATG 2 cut(s) 136, 164
FatI CATG 2 cut(s) 132, 160
FauNDI CATATG 1 cut(s) 235
FbaI TGATCA 1 cut(s) 267
Fnu4HI GCNGC 1 cut(s) 176
FokI GGATG 1 cut(s) 277
Fsp4HI GCNGC 1 cut(s) 176
FspBI CTAG 2 cut(s) 81, 310
GluI GCNGC 1 cut(s) 176
GsuI CTGGAG 1 cut(s) 51
Hin1II CATG 2 cut(s) 136, 164
HinfI GANTC 2 cut(s) 76, 108
Hpy166II GTNNAC 1 cut(s) 43
Hpy188I TCNGA 1 cut(s) 107
Hpy188III TCNNGA 1 cut(s) 161
Hpy8I GTNNAC 1 cut(s) 43
HpyCH4V TGCA 1 cut(s) 210
HpyF3I CTNAG 3 cut(s) 53, 192, 243
Hsp92II CATG 2 cut(s) 136, 164
Ksp22I TGATCA 1 cut(s) 267
Kzo9I GATC 4 cut(s) 56, 185, 228, 267
LmnI GCTCC 1 cut(s) 172
LpnPI CCDG 4 cut(s) 41, 81, 108, 247
Lsp1109I GCAGC 1 cut(s) 162
MaeI CTAG 2 cut(s) 81, 310
MalI GATC 4 cut(s) 58, 187, 230, 269
MboI GATC 4 cut(s) 56, 185, 228, 267
MflI RGATCY 1 cut(s) 228
MhlI GDGCHC 1 cut(s) 65
MluCI AATT 2 cut(s) 146, 164
MlyI GAGTC 2 cut(s) 70, 117
MmeI TCCRAC 1 cut(s) 85
MnlI CCTC 4 cut(s) 5, 77, 187, 247
MseI TTAA 2 cut(s) 224, 300
MspA1I CMGCKG 1 cut(s) 191
NdeI CATATG 1 cut(s) 235
NdeII GATC 4 cut(s) 56, 185, 228, 267
NlaIII CATG 2 cut(s) 136, 164
NlaIV GGNNCC 1 cut(s) 230
PagI TCATGA 1 cut(s) 160
PkrI GCNGC 1 cut(s) 177
PleI GAGTC 2 cut(s) 70, 116
PpsI GAGTC 2 cut(s) 70, 116
PspN4I GGNNCC 1 cut(s) 230
PsuI RGATCY 1 cut(s) 228
PvuII CAGCTG 1 cut(s) 191
RsaI GTAC 1 cut(s) 260
RsaNI GTAC 1 cut(s) 259
SaqAI TTAA 2 cut(s) 224, 300
SatI GCNGC 1 cut(s) 176
Sau3AI GATC 4 cut(s) 56, 185, 228, 267
ScaI AGTACT 1 cut(s) 260
SchI GAGTC 2 cut(s) 70, 117
SduI GDGCHC 1 cut(s) 65
SetI ASST 6 cut(s) 88, 177, 193, 244, 291, 300
Sse9I AATT 2 cut(s) 146, 164
SsiI CCGC 1 cut(s) 127
SspMI CTAG 2 cut(s) 81, 310
TaqI TCGA 2 cut(s) 59, 111
TasI AATT 2 cut(s) 146, 164
TatI WGTACW 1 cut(s) 258
Tru1I TTAA 2 cut(s) 224, 300
Tru9I TTAA 2 cut(s) 224, 300
TseI GCWGC 1 cut(s) 175
TspDTI ATGAA 4 cut(s) 121, 128, 177, 252
XapI RAATTY 1 cut(s) 164
XspI CTAG 2 cut(s) 81, 310
ZrmI AGTACT 1 cut(s) 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.