Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0008949

Physical Location & Seq

Genomic Coordinates Forward (+)

32806513 .. 32809063

Gene Structure 2551 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g41874.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGGCACCCTCGCACATTTCATTTTTGCTCCCAACTCTCCTCCTAGTTCTACTACTAGTCACCGAAGTAGCAGCAAAAGTTCCGGCAGTCATAGTGTTCGGAGACTCCACCGTCGATGCTGGGAACAACAACCAGATTCCCACCATTGCCAGGAGCAATTTCCAGCCTTATGGCCGTGATTTCTTTGGTGGCAAGCCAACCGGGAGGTTCTCCAACGGTCGAATTGCCACGGACTTCATCTCTAAAGCCTTTGGACTCAAACCGACCATTCCGGCCTACTTGGATCCTTCCTACAAGATATCGGATTTCGCCACTGGTGTCACATTTGCTTCTGCTGGCACCGGCTATGACACTGCAACTTCAGATGTGCTGTCTGTAATATCACTGTGGAAGCAATTGGACTACTACAAGGAATACCAGACTAAACTGAGAGCTTACCAGGGAGGAAATAAAGCAAAGGAAACAATAAACGAAGCTTTACACATGATGAGCTTAGGAACCAATGACTTCCTGGAGAACTACTACTCCACATTTCCACCATCTGGCCGATCATCCCAATACACTACCTCCCAATACGAAAACTTTCTCATCGGAATAGCAGGGAATTTCGTGAGAGAACTCTACAAGCTCGGAGCTCGGAAAATTTCGGTTGGAGGACTACCTCCAATGGGGTGCTTGCCATTGGAGAGAACCAGTAATTTCATGGGTGGAAATGACTGCATTTCGAGTTACAACGATGTGGCTTTGGCGTTCAATAACAAGCTGAATAACTTGACCGTAAGCCTCAATAAAGAGCTTCCTGGGAGCTCTGTGGTGTTCTCAAATATTTACTTCATTGTCCTGAATATGATAAAAAAGCCTTCTTCATATGGTTTTGAAGTGACATCCACAGCTTGCTGTGCCACAGGAATGTTTGAGATGGGGTACGCATGCAACCGAAACAACATGCTCACATGCACTGATGCAAGCAAATACATCTTCTGGGACTCCTTCCATCCTACAGAGAAAGCAAACCAGATCATCTCTGATCACCTTGTCAAACATGTCCTGGCTCAGTTTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

355

Amino Acids

38.91

Weight (kDa)

8.09

Isoelectric Point (pI)

28.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	30 - 345	1.7e-33	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008949)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04570
fragaria_vesca	FvH4_6g41874 FvH4_6g41874
malus_domestica	MD09G1116400.v1.1 MD09G1116500.v1.1
prunus_persica	Prupe.3G208200_v2.0.a1 Prupe.3G208200_v2.0.a1 Prupe.3G208300_v2.0.a1
pyrus_communis	pycom09g04080
rosa_chinensis	RchiOBHm_Chr2g0157761
rosa_laevigata	RLG00000021016
rosa_multiflora	Rmu_co8160066.1_g000001 Rmu_sc0001275.1_g000028 Rmu_sc0019633.1_g000007
rosa_roxburghii	Rroxscaffold_2G00091980
rosa_rugosa	Rorug02G0463300
rosa_samantha	Rh1AG192600 Rh2AG528500 Rh2BG542500 Rh2CG512800 Rh2DG551500
rosa_wichuraiana	Rw2G043700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	110
AccB1I	GGYRCC	2 cut(s)	4, 338
AccB7I	CCANNNNNTGG	1 cut(s)	542
AclWI	GGATC	2 cut(s)	278, 291
AcoI	YGGCCR	2 cut(s)	172, 544
AcsI	RAATTY	2 cut(s)	604, 642
AcuI	CTGAAG	1 cut(s)	345
AfaI	GTAC	1 cut(s)	926
AfiI	CCNNNNNNNGG	3 cut(s)	150, 542, 668
AflIII	ACRYGT	1 cut(s)	1042
AgsI	TTSAA	2 cut(s)	754, 878
AhlI	ACTAGT	1 cut(s)	55
AjnI	CCWGG	5 cut(s)	149, 438, 510, 799, 1047
AloI	GAACNNNNNNTCC	2 cut(s)	509, 541
AluBI	AGCT	9 cut(s)	434, 476, 492, 628, 635, 763, 796, 807, 893
AluI	AGCT	9 cut(s)	434, 476, 492, 628, 635, 763, 796, 807, 893
Alw21I	GWGCWC	2 cut(s)	637, 809
Alw26I	GTCTC	1 cut(s)	96
AlwI	GGATC	2 cut(s)	278, 291
AoxI	GGCC	3 cut(s)	172, 273, 544
ApeKI	GCWGC	1 cut(s)	71
ApoI	RAATTY	2 cut(s)	604, 642
Asp700I	GAANNNNTTC	1 cut(s)	582
AsuC2I	CCSGG	1 cut(s)	202
AsuHPI	GGTGA	2 cut(s)	52, 1022
BamHI	GGATCC	1 cut(s)	283
BanI	GGYRCC	2 cut(s)	4, 338
BanII	GRGCYC	2 cut(s)	637, 809
Bbv12I	GWGCWC	2 cut(s)	637, 809
BbvI	GCAGC	1 cut(s)	83
BccI	CCATC	3 cut(s)	547, 913, 1002
BceAI	ACGGC	1 cut(s)	159
BciT130I	CCWGG	5 cut(s)	151, 440, 512, 801, 1049
BclI	TGATCA	1 cut(s)	1027
BcnI	CCSGG	1 cut(s)	202
BcoDI	GTCTC	1 cut(s)	96
BcuI	ACTAGT	1 cut(s)	55
BfaI	CTAG	2 cut(s)	44, 56
BfmI	CTRYAG	1 cut(s)	999
BisI	GCNGC	1 cut(s)	72
BlsI	GCNGC	1 cut(s)	73
Bme1390I	CCNGG	6 cut(s)	151, 202, 440, 512, 801, 1049
BmiI	GGNNCC	4 cut(s)	6, 285, 340, 499
BmrFI	CCNGG	6 cut(s)	151, 202, 440, 512, 801, 1049
BmsI	GCATC	2 cut(s)	106, 952
BpmI	CTGGAG	1 cut(s)	533
Bpu10I	CCTNAGC	1 cut(s)	493
BpuMI	CCSGG	1 cut(s)	202
BsaJI	CCNNGG	3 cut(s)	228, 439, 800
BsaXI	ACNNNNNCTCC	4 cut(s)	509, 539, 551, 581
Bsc4I	CCNNNNNNNGG	3 cut(s)	150, 542, 668
Bse118I	RCCGGY	1 cut(s)	341
Bse1I	ACTGG	2 cut(s)	319, 693
Bse3DI	GCAATG	1 cut(s)	144
BseBI	CCWGG	5 cut(s)	151, 440, 512, 801, 1049
BseDI	CCNNGG	3 cut(s)	228, 439, 800
BseGI	GGATG	3 cut(s)	551, 884, 994
BseLI	CCNNNNNNNGG	3 cut(s)	150, 542, 668
BseMI	GCAATG	1 cut(s)	144
BseMII	CTCAG	1 cut(s)	419
BseNI	ACTGG	2 cut(s)	319, 693
BseRI	GAGGAG	1 cut(s)	29
BseXI	GCAGC	1 cut(s)	83
BseYI	CCCAGC	1 cut(s)	119
Bsh1285I	CGRYCG	1 cut(s)	220
BshFI	GGCC	3 cut(s)	174, 275, 546
BshNI	GGYRCC	2 cut(s)	4, 338
BsiEI	CGRYCG	1 cut(s)	220
BsiHKAI	GWGCWC	2 cut(s)	637, 809
BsiSI	CCGG	4 cut(s)	83, 201, 272, 342
BslFI	GGGAC	1 cut(s)	998
BslI	CCNNNNNNNGG	3 cut(s)	150, 542, 668
BsmAI	GTCTC	1 cut(s)	96
BsmFI	GGGAC	1 cut(s)	998
BsnI	GGCC	3 cut(s)	174, 275, 546
Bsp1286I	GDGCHC	2 cut(s)	637, 809
Bsp143I	GATC	4 cut(s)	283, 548, 1017, 1027
BspANI	GGCC	3 cut(s)	174, 275, 546
BspCNI	CTCAG	1 cut(s)	420
BspLI	GGNNCC	4 cut(s)	6, 285, 340, 499
BspPI	GGATC	2 cut(s)	278, 291
BspT107I	GGYRCC	2 cut(s)	4, 338
BsrDI	GCAATG	1 cut(s)	144
BsrFI	RCCGGY	1 cut(s)	341
BsrI	ACTGG	2 cut(s)	319, 693
BssAI	RCCGGY	1 cut(s)	341
BssECI	CCNNGG	3 cut(s)	228, 439, 800
BssMI	GATC	4 cut(s)	283, 548, 1017, 1027
Bst2UI	CCWGG	5 cut(s)	151, 440, 512, 801, 1049
Bst4CI	ACNGT	4 cut(s)	112, 218, 387, 778
BstC8I	GCNNGC	6 cut(s)	194, 337, 677, 895, 931, 967
BstDEI	CTNAG	3 cut(s)	428, 493, 1053
BstDSI	CCRYGG	1 cut(s)	228
BstF5I	GGATG	3 cut(s)	551, 884, 994
BstKTI	GATC	4 cut(s)	286, 551, 1020, 1030
BstMAI	GTCTC	1 cut(s)	96
BstMBI	GATC	4 cut(s)	283, 548, 1017, 1027
BstMCI	CGRYCG	1 cut(s)	220
BstMWI	GCNNNNNNNGC	1 cut(s)	899
BstNI	CCWGG	5 cut(s)	151, 440, 512, 801, 1049
BstNSI	RCATGY	4 cut(s)	933, 949, 957, 1046
BstSCI	CCNGG	6 cut(s)	149, 200, 438, 510, 799, 1047
BstSFI	CTRYAG	1 cut(s)	999
BstV1I	GCAGC	1 cut(s)	83
BstX2I	RGATCY	1 cut(s)	283
BstXI	CCANNNNNNTGG	1 cut(s)	170
BstYI	RGATCY	1 cut(s)	283
BsuRI	GGCC	3 cut(s)	174, 275, 546
BtgI	CCRYGG	1 cut(s)	228
BtsCI	GGATG	3 cut(s)	551, 884, 994
BtsI	GCAGTG	1 cut(s)	351
BtsIMutI	CAGTG	4 cut(s)	312, 351, 383, 957
Cac8I	GCNNGC	6 cut(s)	194, 337, 677, 895, 931, 967
Cfr10I	RCCGGY	1 cut(s)	341
Csp6I	GTAC	1 cut(s)	925
CviAII	CATG	6 cut(s)	484, 703, 930, 946, 954, 1043
CviQI	GTAC	1 cut(s)	925
DdeI	CTNAG	3 cut(s)	428, 493, 1053
DpnI	GATC	4 cut(s)	285, 550, 1019, 1029
DpnII	GATC	4 cut(s)	283, 548, 1017, 1027
DrdI	GACNNNNNNGTC	1 cut(s)	110
DseDI	GACNNNNNNGTC	1 cut(s)	110
EaeI	YGGCCR	2 cut(s)	172, 544
Ecl136II	GAGCTC	2 cut(s)	635, 807
Eco24I	GRGCYC	2 cut(s)	637, 809
Eco32I	GATATC	1 cut(s)	300
Eco53kI	GAGCTC	2 cut(s)	635, 807
Eco57I	CTGAAG	1 cut(s)	345
EcoICRI	GAGCTC	2 cut(s)	635, 807
EcoRII	CCWGG	5 cut(s)	149, 438, 510, 799, 1047
EcoRV	GATATC	1 cut(s)	300
EcoT38I	GRGCYC	2 cut(s)	637, 809
FaeI	CATG	6 cut(s)	487, 706, 933, 949, 957, 1046
FaqI	GGGAC	1 cut(s)	998
FatI	CATG	6 cut(s)	483, 702, 929, 945, 953, 1042
FauNDI	CATATG	1 cut(s)	868
FbaI	TGATCA	1 cut(s)	1027
Fnu4HI	GCNGC	1 cut(s)	72
FokI	GGATG	3 cut(s)	538, 871, 981
FriOI	GRGCYC	2 cut(s)	637, 809
Fsp4HI	GCNGC	1 cut(s)	72
FspBI	CTAG	2 cut(s)	44, 56
GluI	GCNGC	1 cut(s)	72
GsaI	CCCAGC	1 cut(s)	123
GsuI	CTGGAG	1 cut(s)	533
HaeIII	GGCC	3 cut(s)	174, 275, 546
HapII	CCGG	4 cut(s)	83, 201, 272, 342
Hin1II	CATG	6 cut(s)	487, 706, 933, 949, 957, 1046
HindIII	AAGCTT	1 cut(s)	474
HinfI	GANTC	4 cut(s)	104, 136, 255, 986
HpaII	CCGG	4 cut(s)	83, 201, 272, 342
HphI	GGTGA	2 cut(s)	52, 1022
Hpy188I	TCNGA	7 cut(s)	101, 304, 364, 593, 632, 639, 1027
Hpy188III	TCNNGA	2 cut(s)	610, 841
Hpy99I	CGWCG	1 cut(s)	116
HpyAV	CCTTC	3 cut(s)	297, 870, 1000
HpyCH4III	ACNGT	4 cut(s)	112, 218, 387, 778
HpyCH4V	TGCA	5 cut(s)	356, 720, 933, 957, 965
HpyF10VI	GCNNNNNNNGC	1 cut(s)	899
HpyF3I	CTNAG	3 cut(s)	428, 493, 1053
Hsp92II	CATG	6 cut(s)	487, 706, 933, 949, 957, 1046
Ksp22I	TGATCA	1 cut(s)	1027
Kzo9I	GATC	4 cut(s)	283, 548, 1017, 1027
LmnI	GCTCC	4 cut(s)	33, 153, 632, 804
Lsp1109I	GCAGC	1 cut(s)	83
LweI	GCATC	2 cut(s)	106, 952
MaeI	CTAG	2 cut(s)	44, 56
MaeIII	GTNAC	4 cut(s)	58, 319, 728, 880
MalI	GATC	4 cut(s)	285, 550, 1019, 1029
MboI	GATC	4 cut(s)	283, 548, 1017, 1027
MboII	GAAGA	2 cut(s)	855, 970
MfeI	CAATTG	1 cut(s)	395
MflI	RGATCY	1 cut(s)	283
MhlI	GDGCHC	2 cut(s)	637, 809
MluCI	AATT	6 cut(s)	157, 222, 395, 604, 642, 697
MlyI	GAGTC	3 cut(s)	98, 249, 980
MmeI	TCCRAC	2 cut(s)	237, 631
MnlI	CCTC	8 cut(s)	19, 50, 198, 437, 577, 647, 672, 794
MroXI	GAANNNNTTC	1 cut(s)	582
MseI	TTAA	1 cut(s)	1063
MslI	CAYNNNNRTG	1 cut(s)	908
MspI	CCGG	4 cut(s)	83, 201, 272, 342
MspR9I	CCNGG	6 cut(s)	151, 202, 440, 512, 801, 1049
MunI	CAATTG	1 cut(s)	395
MvaI	CCWGG	5 cut(s)	151, 440, 512, 801, 1049
MwoI	GCNNNNNNNGC	1 cut(s)	899
NciI	CCSGG	1 cut(s)	202
NdeI	CATATG	1 cut(s)	868
NdeII	GATC	4 cut(s)	283, 548, 1017, 1027
NlaIII	CATG	6 cut(s)	487, 706, 933, 949, 957, 1046
NlaIV	GGNNCC	4 cut(s)	6, 285, 340, 499
NmuCI	GTSAC	3 cut(s)	58, 319, 880
NspI	RCATGY	4 cut(s)	933, 949, 957, 1046
PaeI	GCATGC	1 cut(s)	933
PciI	ACATGT	1 cut(s)	1042
PdmI	GAANNNNTTC	1 cut(s)	582
PfeI	GAWTC	1 cut(s)	136
PflMI	CCANNNNNTGG	1 cut(s)	542
PfoI	TCCNGGA	1 cut(s)	510
PkrI	GCNGC	1 cut(s)	73
PleI	GAGTC	3 cut(s)	98, 249, 980
PpsI	GAGTC	3 cut(s)	98, 249, 980
PscI	ACATGT	1 cut(s)	1042
Psp124BI	GAGCTC	2 cut(s)	637, 809
Psp6I	CCWGG	5 cut(s)	149, 438, 510, 799, 1047
PspFI	CCCAGC	1 cut(s)	119
PspGI	CCWGG	5 cut(s)	149, 438, 510, 799, 1047
PspN4I	GGNNCC	4 cut(s)	6, 285, 340, 499
PsuI	RGATCY	1 cut(s)	283
RsaI	GTAC	1 cut(s)	926
RsaNI	GTAC	1 cut(s)	925
RseI	CAYNNNNRTG	1 cut(s)	908
SacI	GAGCTC	2 cut(s)	637, 809
SaqAI	TTAA	1 cut(s)	1063
SatI	GCNGC	1 cut(s)	72
Sau3AI	GATC	4 cut(s)	283, 548, 1017, 1027
SchI	GAGTC	3 cut(s)	98, 249, 980
ScrFI	CCNGG	6 cut(s)	151, 202, 440, 512, 801, 1049
SduI	GDGCHC	2 cut(s)	637, 809
SfaNI	GCATC	2 cut(s)	106, 952
SfcI	CTRYAG	1 cut(s)	999
SmiMI	CAYNNNNRTG	1 cut(s)	908
SpeI	ACTAGT	1 cut(s)	55
SphI	GCATGC	1 cut(s)	933
Sse9I	AATT	6 cut(s)	157, 222, 395, 604, 642, 697
SspI	AATATT	1 cut(s)	826
SspMI	CTAG	2 cut(s)	44, 56
SstI	GAGCTC	2 cut(s)	637, 809
StyD4I	CCNGG	6 cut(s)	149, 200, 438, 510, 799, 1047
TaaI	ACNGT	4 cut(s)	112, 218, 387, 778
TaqI	TCGA	3 cut(s)	114, 220, 725
TasI	AATT	6 cut(s)	157, 222, 395, 604, 642, 697
TfiI	GAWTC	1 cut(s)	136
Tru1I	TTAA	1 cut(s)	1063
Tru9I	TTAA	1 cut(s)	1063
TscAI	CASTG	4 cut(s)	319, 358, 390, 964
TseFI	GTSAC	3 cut(s)	58, 319, 880
TseI	GCWGC	1 cut(s)	71
Tsp45I	GTSAC	3 cut(s)	58, 319, 880
TspDTI	ATGAA	5 cut(s)	9, 226, 691, 823, 855
TspGWI	ACGGA	1 cut(s)	245
TspRI	CASTG	4 cut(s)	319, 358, 390, 964
Van91I	CCANNNNNTGG	1 cut(s)	542
XapI	RAATTY	2 cut(s)	604, 642
XceI	RCATGY	4 cut(s)	933, 949, 957, 1046
XcmI	CCANNNNNNNNNTGG	2 cut(s)	508, 700
XmnI	GAANNNNTTC	1 cut(s)	582
XspI	CTAG	2 cut(s)	44, 56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.