Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0008949

Physical Location & Seq

Genomic Coordinates Reverse (-)

3010811 .. 3022495

Gene Structure 11685 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g04080.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGGCATACATGCACATTTCATGGCTTCTTCTAATTCAATGCCTACTTCTGGTCACCAGAATTGGTGCCAAAGTTCCAGCAATCATTGTGTTTGGAGACTCATCGGTCGATGCTGGGAACAACAACCAGATTCCCACAATTGCCAGGAGCAACTTTCAGCCTTATGGCCGTGACTTCGCCAGTGGCAAGCCTACTGGGAGATTCTCTAATGGCAGAGTTCCCACGGACTTCATCTCCGAAGCTTTTGGACTCAAACCATTCGTACCTGCCTACTTGGATCCTACTTATAACATATCAGATTTTGCAACTGGAGTCACCTTTGCTTCTGCTGGCACTGGCTACGACACTGCAACTTCAGATGTTCTATCTGTGATTCCACTATGGAAGCAAGTGCAGTACTACAAGGAATACCAGAGCAAACTGAGACTTCATCTAGGAGGAAACAAAACAAAGGAAACAATCCATGAAGCTTTGCACATGACAAGCTTAGGAACCAATGATTTCCTTGAAAACTACTACTCATACCCCGGCCGGTCGAATCAATACTCTATCGAACAATACCAAGATTTTCTCATTGGAATTGCAGGAAATTTCATCAAACAACTCTACGGTCTTGGAGCTCGGAAAATATCCTTAGGAGGCCTACCTCCGATGGGGTGCTTGCCATTGGAGAGAACCACCAATGTGATGGGTGGAAATGACTGCATTTCAAGTTACAACAATGTGGCCTTGGAGTTCAATGGCAAGTTGAAGACCTTGACTACAAGCCTTAACAAAGAGCTTACTGGGATCAAATTGTGGTTTTTTCAAACCCATATTACATTTTCCTGCACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

279

Amino Acids

30.77

Weight (kDa)

8.55

Isoelectric Point (pI)

32.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008949)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04570
fragaria_vesca	FvH4_6g41874 FvH4_6g41874
malus_domestica	MD09G1116400.v1.1 MD09G1116500.v1.1
prunus_persica	Prupe.3G208200_v2.0.a1 Prupe.3G208200_v2.0.a1 Prupe.3G208300_v2.0.a1
pyrus_communis	pycom09g04080
rosa_chinensis	RchiOBHm_Chr2g0157761
rosa_laevigata	RLG00000021016
rosa_multiflora	Rmu_co8160066.1_g000001 Rmu_sc0001275.1_g000028 Rmu_sc0019633.1_g000007
rosa_roxburghii	Rroxscaffold_2G00091980
rosa_rugosa	Rorug02G0463300
rosa_samantha	Rh1AG192600 Rh2AG528500 Rh2BG542500 Rh2CG512800 Rh2DG551500
rosa_wichuraiana	Rw2G043700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	288
AasI	GACNNNNNNGTC	1 cut(s)	104
Acc36I	ACCTGC	1 cut(s)	274
AccB1I	GGYRCC	1 cut(s)	65
AclWI	GGATC	3 cut(s)	272, 285, 797
AcoI	YGGCCR	2 cut(s)	166, 529
AcsI	RAATTY	1 cut(s)	589
AcuI	CTGAAG	1 cut(s)	339
AfaI	GTAC	2 cut(s)	264, 398
AfiI	CCNNNNNNNGG	2 cut(s)	49, 653
AgsI	TTSAA	6 cut(s)	38, 509, 711, 739, 751, 809
AjnI	CCWGG	1 cut(s)	143
AleI	CACNNNNGTG	1 cut(s)	683
AluBI	AGCT	5 cut(s)	242, 470, 486, 620, 781
AluI	AGCT	5 cut(s)	242, 470, 486, 620, 781
Alw21I	GWGCWC	1 cut(s)	622
Alw26I	GTCTC	2 cut(s)	90, 418
AlwI	GGATC	3 cut(s)	272, 285, 797
AoxI	GGCC	4 cut(s)	166, 529, 640, 726
ApoI	RAATTY	1 cut(s)	589
AsuC2I	CCSGG	1 cut(s)	528
AsuHPI	GGTGA	2 cut(s)	46, 307
AxyI	CCTNAGG	1 cut(s)	634
BamHI	GGATCC	1 cut(s)	277
BanI	GGYRCC	1 cut(s)	65
BanII	GRGCYC	1 cut(s)	622
BbsI	GAAGAC	1 cut(s)	758
Bbv12I	GWGCWC	1 cut(s)	622
BccI	CCATC	2 cut(s)	646, 682
BceAI	ACGGC	1 cut(s)	153
BciT130I	CCWGG	1 cut(s)	145
BcnI	CCSGG	1 cut(s)	528
BcoDI	GTCTC	2 cut(s)	90, 418
BfaI	CTAG	1 cut(s)	434
BfuAI	ACCTGC	1 cut(s)	274
BmcAI	AGTACT	1 cut(s)	398
Bme1390I	CCNGG	2 cut(s)	145, 528
BmiI	GGNNCC	3 cut(s)	67, 279, 493
BmrFI	CCNGG	2 cut(s)	145, 528
BmrI	ACTGGG	2 cut(s)	204, 795
BmsI	GCATC	1 cut(s)	100
BmuI	ACTGGG	2 cut(s)	204, 795
BpiI	GAAGAC	1 cut(s)	758
BpmI	CTGGAG	1 cut(s)	330
Bpu10I	CCTNAGC	1 cut(s)	487
BpuMI	CCSGG	1 cut(s)	528
BsaJI	CCNNGG	3 cut(s)	222, 526, 729
BsaXI	ACNNNNNCTCC	2 cut(s)	218, 248
Bsc4I	CCNNNNNNNGG	2 cut(s)	49, 653
Bse118I	RCCGGY	1 cut(s)	531
Bse1I	ACTGG	5 cut(s)	180, 199, 313, 340, 790
Bse21I	CCTNAGG	1 cut(s)	634
BseBI	CCWGG	1 cut(s)	145
BseDI	CCNNGG	3 cut(s)	222, 526, 729
BseLI	CCNNNNNNNGG	2 cut(s)	49, 653
BseMII	CTCAG	1 cut(s)	413
BseNI	ACTGG	5 cut(s)	180, 199, 313, 340, 790
BseX3I	CGGCCG	1 cut(s)	529
BseYI	CCCAGC	1 cut(s)	113
BsgI	GTGCAG	2 cut(s)	413, 814
Bsh1285I	CGRYCG	3 cut(s)	108, 532, 536
BshFI	GGCC	4 cut(s)	168, 531, 642, 728
BshNI	GGYRCC	1 cut(s)	65
BsiEI	CGRYCG	3 cut(s)	108, 532, 536
BsiHKAI	GWGCWC	1 cut(s)	622
BsiSI	CCGG	2 cut(s)	528, 532
BslI	CCNNNNNNNGG	2 cut(s)	49, 653
BsmAI	GTCTC	2 cut(s)	90, 418
BsnI	GGCC	4 cut(s)	168, 531, 642, 728
Bsp1286I	GDGCHC	1 cut(s)	622
Bsp143I	GATC	2 cut(s)	277, 789
BspANI	GGCC	4 cut(s)	168, 531, 642, 728
BspCNI	CTCAG	1 cut(s)	414
BspLI	GGNNCC	3 cut(s)	67, 279, 493
BspMI	ACCTGC	1 cut(s)	274
BspPI	GGATC	3 cut(s)	272, 285, 797
BspT107I	GGYRCC	1 cut(s)	65
BsrFI	RCCGGY	1 cut(s)	531
BsrI	ACTGG	5 cut(s)	180, 199, 313, 340, 790
BssAI	RCCGGY	1 cut(s)	531
BssECI	CCNNGG	3 cut(s)	222, 526, 729
BssMI	GATC	2 cut(s)	277, 789
BssT1I	CCWWGG	1 cut(s)	729
Bst2UI	CCWGG	1 cut(s)	145
Bst4CI	ACNGT	1 cut(s)	611
BstC8I	GCNNGC	3 cut(s)	188, 331, 662
BstDEI	CTNAG	3 cut(s)	422, 487, 634
BstDSI	CCRYGG	1 cut(s)	222
BstEII	GGTNACC	1 cut(s)	52
BstKTI	GATC	2 cut(s)	280, 792
BstMAI	GTCTC	2 cut(s)	90, 418
BstMBI	GATC	2 cut(s)	277, 789
BstMCI	CGRYCG	3 cut(s)	108, 532, 536
BstNI	CCWGG	1 cut(s)	145
BstNSI	RCATGY	1 cut(s)	13
BstPI	GGTNACC	1 cut(s)	52
BstSCI	CCNGG	2 cut(s)	143, 526
BstV2I	GAAGAC	1 cut(s)	758
BstX2I	RGATCY	1 cut(s)	277
BstXI	CCANNNNNNTGG	1 cut(s)	688
BstYI	RGATCY	1 cut(s)	277
BstZI	CGGCCG	1 cut(s)	529
Bsu36I	CCTNAGG	1 cut(s)	634
BsuRI	GGCC	4 cut(s)	168, 531, 642, 728
BtgI	CCRYGG	1 cut(s)	222
BtsI	GCAGTG	1 cut(s)	345
BtsIMutI	CAGTG	3 cut(s)	187, 333, 345
BveI	ACCTGC	1 cut(s)	274
Cac8I	GCNNGC	3 cut(s)	188, 331, 662
Cfr10I	RCCGGY	1 cut(s)	531
Csp6I	GTAC	2 cut(s)	263, 397
CviAII	CATG	5 cut(s)	10, 21, 464, 478, 834
CviQI	GTAC	2 cut(s)	263, 397
DdeI	CTNAG	3 cut(s)	422, 487, 634
DpnI	GATC	2 cut(s)	279, 791
DpnII	GATC	2 cut(s)	277, 789
DrdI	GACNNNNNNGTC	1 cut(s)	104
DseDI	GACNNNNNNGTC	1 cut(s)	104
EaeI	YGGCCR	2 cut(s)	166, 529
EagI	CGGCCG	1 cut(s)	529
Ecl136II	GAGCTC	1 cut(s)	620
EclXI	CGGCCG	1 cut(s)	529
Eco130I	CCWWGG	1 cut(s)	729
Eco147I	AGGCCT	1 cut(s)	642
Eco24I	GRGCYC	1 cut(s)	622
Eco52I	CGGCCG	1 cut(s)	529
Eco53kI	GAGCTC	1 cut(s)	620
Eco57I	CTGAAG	1 cut(s)	339
Eco81I	CCTNAGG	1 cut(s)	634
Eco91I	GGTNACC	1 cut(s)	52
EcoICRI	GAGCTC	1 cut(s)	620
EcoO65I	GGTNACC	1 cut(s)	52
EcoRII	CCWGG	1 cut(s)	143
EcoT14I	CCWWGG	1 cut(s)	729
EcoT38I	GRGCYC	1 cut(s)	622
ErhI	CCWWGG	1 cut(s)	729
FaeI	CATG	5 cut(s)	13, 24, 467, 481, 837
FatI	CATG	5 cut(s)	9, 20, 463, 477, 833
FriOI	GRGCYC	1 cut(s)	622
FspBI	CTAG	1 cut(s)	434
GsaI	CCCAGC	1 cut(s)	117
GsuI	CTGGAG	1 cut(s)	330
HaeIII	GGCC	4 cut(s)	168, 531, 642, 728
HapII	CCGG	2 cut(s)	528, 532
Hin1II	CATG	5 cut(s)	13, 24, 467, 481, 837
HindIII	AAGCTT	3 cut(s)	240, 468, 484
HinfI	GANTC	7 cut(s)	98, 130, 201, 249, 312, 373, 538
HpaII	CCGG	2 cut(s)	528, 532
HphI	GGTGA	2 cut(s)	46, 307
Hpy188I	TCNGA	5 cut(s)	238, 298, 358, 624, 651
HpyCH4III	ACNGT	1 cut(s)	611
HpyCH4V	TGCA	8 cut(s)	13, 305, 350, 394, 475, 584, 705, 831
HpyF3I	CTNAG	3 cut(s)	422, 487, 634
Hsp92II	CATG	5 cut(s)	13, 24, 467, 481, 837
Kzo9I	GATC	2 cut(s)	277, 789
LmnI	GCTCC	2 cut(s)	147, 617
LweI	GCATC	1 cut(s)	100
MaeI	CTAG	1 cut(s)	434
MaeIII	GTNAC	4 cut(s)	52, 170, 313, 713
MalI	GATC	2 cut(s)	279, 791
MboI	GATC	2 cut(s)	277, 789
MboII	GAAGA	2 cut(s)	20, 763
MfeI	CAATTG	1 cut(s)	138
MflI	RGATCY	1 cut(s)	277
MhlI	GDGCHC	1 cut(s)	622
MluCI	AATT	6 cut(s)	33, 60, 138, 579, 589, 794
MlyI	GAGTC	3 cut(s)	92, 243, 321
MnlI	CCTC	3 cut(s)	431, 632, 657
MseI	TTAA	1 cut(s)	771
MslI	CAYNNNNRTG	1 cut(s)	683
MspI	CCGG	2 cut(s)	528, 532
MspR9I	CCNGG	2 cut(s)	145, 528
MunI	CAATTG	1 cut(s)	138
MvaI	CCWGG	1 cut(s)	145
NciI	CCSGG	1 cut(s)	528
NdeII	GATC	2 cut(s)	277, 789
NlaIII	CATG	5 cut(s)	13, 24, 467, 481, 837
NlaIV	GGNNCC	3 cut(s)	67, 279, 493
NmuCI	GTSAC	3 cut(s)	52, 170, 313
NspI	RCATGY	1 cut(s)	13
OliI	CACNNNNGTG	1 cut(s)	683
PceI	AGGCCT	1 cut(s)	642
PfeI	GAWTC	4 cut(s)	130, 201, 373, 538
PleI	GAGTC	3 cut(s)	92, 243, 320
PpsI	GAGTC	3 cut(s)	92, 243, 320
PsiI	TTATAA	1 cut(s)	288
Psp124BI	GAGCTC	1 cut(s)	622
Psp6I	CCWGG	1 cut(s)	143
PspEI	GGTNACC	1 cut(s)	52
PspFI	CCCAGC	1 cut(s)	113
PspGI	CCWGG	1 cut(s)	143
PspN4I	GGNNCC	3 cut(s)	67, 279, 493
PsuI	RGATCY	1 cut(s)	277
RsaI	GTAC	2 cut(s)	264, 398
RsaNI	GTAC	2 cut(s)	263, 397
RseI	CAYNNNNRTG	1 cut(s)	683
SacI	GAGCTC	1 cut(s)	622
SaqAI	TTAA	1 cut(s)	771
Sau3AI	GATC	2 cut(s)	277, 789
ScaI	AGTACT	1 cut(s)	398
SchI	GAGTC	3 cut(s)	92, 243, 321
ScrFI	CCNGG	2 cut(s)	145, 528
SduI	GDGCHC	1 cut(s)	622
SetI	ASST	9 cut(s)	244, 268, 320, 472, 488, 622, 649, 758, 783
SfaNI	GCATC	1 cut(s)	100
SmiMI	CAYNNNNRTG	1 cut(s)	683
Sse9I	AATT	6 cut(s)	33, 60, 138, 579, 589, 794
SseBI	AGGCCT	1 cut(s)	642
SspMI	CTAG	1 cut(s)	434
SstI	GAGCTC	1 cut(s)	622
StuI	AGGCCT	1 cut(s)	642
StyD4I	CCNGG	2 cut(s)	143, 526
StyI	CCWWGG	1 cut(s)	729
TaaI	ACNGT	1 cut(s)	611
TaqI	TCGA	3 cut(s)	108, 536, 552
TaqII	GACCGA	1 cut(s)	94
TasI	AATT	6 cut(s)	33, 60, 138, 579, 589, 794
TatI	WGTACW	1 cut(s)	396
TfiI	GAWTC	4 cut(s)	130, 201, 373, 538
Tru1I	TTAA	1 cut(s)	771
Tru9I	TTAA	1 cut(s)	771
TscAI	CASTG	3 cut(s)	187, 340, 352
TseFI	GTSAC	3 cut(s)	52, 170, 313
Tsp45I	GTSAC	3 cut(s)	52, 170, 313
TspDTI	ATGAA	5 cut(s)	9, 220, 419, 480, 583
TspGWI	ACGGA	1 cut(s)	239
TspRI	CASTG	3 cut(s)	187, 340, 352
XapI	RAATTY	1 cut(s)	589
XceI	RCATGY	1 cut(s)	13
XcmI	CCANNNNNNNNNTGG	1 cut(s)	685
XspI	CTAG	1 cut(s)	434
ZrmI	AGTACT	1 cut(s)	398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.