Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0008949

Physical Location & Seq

Genomic Coordinates Forward (+)

21434903 .. 21437499

Gene Structure 2597 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G208200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGGGAAACTTGCACATTTCATGGCTTCTTCTAACTCAAAGCCTGTTGCTAGTCACCAGAATTAGTGCCTCGGTGGTCCCTGCAGTCGTTGTGTTCGGGGACTCCTCGGTGGATGCCGGGAACAACAACCAGATTCCCACAATTCTCAGAAGCAATTTTGAGCCTTATGGCCGGGACTTTTCCGGTGGCAAGCCAACTGGGAGGTTCTCCAATGGCAGAGTGCCTACAGATTTCATCTCCCAGGCTCTTGGACTCAAACCATTCGTACCTGCCTACTTGGATCCTTCCTATAACATATCAGATTTTGCCACTGGTGTCACCTTTGCTTCTGCGGGGACTGGCTATGATACTGCAACTTCAGATGTGCTGTCTGTGATACCACTATGGAAGCAACTGGAGTACTACAAGGAATATCAGAACAAACTAAGACTTTATCTTGGAGGAATAAAGGCAAACGAAATAATCAACGGAGCTTTGCACGTTACGAGCATGGGCACCAATGACTTCCTGGAAAACTACTACACATACCCCGGCCGGTCATCCCAATACTCTATCCAACAATACCAAGATTTTCTCATTGGAATTGCAGGAAATTTCATCAAGCAACTCTACCATCTCGGAGCCCGTAAAATCTCCCTCGGAGGTCTGCCTCCGATGGGGTGCTTGCCATTGGAGAGAACCACAAACGTCATGGGTGGAAATGACTGCATTGCAGATTACAACAATGTGGCTCTGGAGTTCAATGGCAAGTTGAAGGGCTTGACCACAACCCTGAGCAAAGAACTTCCTGGGATCAAACTGGTGTTTTCAAACCCATATTACATTTTCCTGCATATGATAAGAAGACCTTCTTTTTATGGATTTGAGGTGACATCAGTAGCTTGCTGTGCCACAGGGACGTTTGAAATGGGGTACGCATGCAATCGAAACAACATGTTCACCTGCACGGATGCAAGCAAATATATATTCTGGGATTCATTTCATCCAACAGAGAAAGCAAATCATATAATCTCTGATTATGTGATGAATAATGTACTGGCCCAGTTTCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

351

Amino Acids

38.83

Weight (kDa)

7.59

Isoelectric Point (pI)

31.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008949)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04570
fragaria_vesca	FvH4_6g41874 FvH4_6g41874
malus_domestica	MD09G1116400.v1.1 MD09G1116500.v1.1
prunus_persica	Prupe.3G208200_v2.0.a1 Prupe.3G208200_v2.0.a1 Prupe.3G208300_v2.0.a1
pyrus_communis	pycom09g04080
rosa_chinensis	RchiOBHm_Chr2g0157761
rosa_laevigata	RLG00000021016
rosa_multiflora	Rmu_co8160066.1_g000001 Rmu_sc0001275.1_g000028 Rmu_sc0019633.1_g000007
rosa_roxburghii	Rroxscaffold_2G00091980
rosa_rugosa	Rorug02G0463300
rosa_samantha	Rh1AG192600 Rh2AG528500 Rh2BG542500 Rh2CG512800 Rh2DG551500
rosa_wichuraiana	Rw2G043700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	950
Acc36I	ACCTGC	2 cut(s)	277, 950
AccB1I	GGYRCC	1 cut(s)	494
AciI	CCGC	1 cut(s)	332
AclWI	GGATC	3 cut(s)	275, 288, 800
AcoI	YGGCCR	2 cut(s)	169, 532
AcsI	RAATTY	1 cut(s)	592
AcuI	CTGAAG	1 cut(s)	342
AfaI	GTAC	4 cut(s)	267, 401, 914, 1035
AfiI	CCNNNNNNNGG	1 cut(s)	656
AflIII	ACRYGT	1 cut(s)	933
AgsI	TTSAA	4 cut(s)	742, 754, 810, 905
AjnI	CCWGG	3 cut(s)	240, 507, 787
AluBI	AGCT	2 cut(s)	473, 881
AluI	AGCT	2 cut(s)	473, 881
AlwI	GGATC	3 cut(s)	275, 288, 800
AoxI	GGCC	3 cut(s)	169, 532, 1038
ApoI	RAATTY	1 cut(s)	592
Asp700I	GAANNNNTTC	1 cut(s)	847
AspS9I	GGNCC	2 cut(s)	76, 1039
AsuC2I	CCSGG	3 cut(s)	118, 173, 531
AsuHPI	GGTGA	4 cut(s)	46, 310, 880, 931
AvaII	GGWCC	1 cut(s)	76
BaeGI	GKGCMC	1 cut(s)	497
BamHI	GGATCC	1 cut(s)	280
BanI	GGYRCC	1 cut(s)	494
BanII	GRGCYC	1 cut(s)	625
BbsI	GAAGAC	1 cut(s)	850
BccI	CCATC	2 cut(s)	621, 649
BciT130I	CCWGG	3 cut(s)	242, 509, 789
BcnI	CCSGG	3 cut(s)	118, 173, 531
BfaI	CTAG	1 cut(s)	50
BfmI	CTRYAG	2 cut(s)	81, 225
BfuAI	ACCTGC	2 cut(s)	277, 950
BmcAI	AGTACT	1 cut(s)	401
Bme1390I	CCNGG	6 cut(s)	118, 173, 242, 509, 531, 789
Bme18I	GGWCC	1 cut(s)	76
BmgT120I	GGNCC	2 cut(s)	76, 1039
BmiI	GGNNCC	4 cut(s)	78, 282, 496, 622
BmrFI	CCNGG	6 cut(s)	118, 173, 242, 509, 531, 789
BmrI	ACTGGG	2 cut(s)	207, 1036
BmsI	GCATC	2 cut(s)	103, 940
BmuI	ACTGGG	2 cut(s)	207, 1036
BpiI	GAAGAC	1 cut(s)	850
BpmI	CTGGAG	2 cut(s)	416, 755
Bpu10I	CCTNAGC	1 cut(s)	773
BpuMI	CCSGG	3 cut(s)	118, 173, 531
BsaJI	CCNNGG	6 cut(s)	69, 105, 240, 529, 637, 788
BsaWI	WCCGGW	1 cut(s)	182
Bsc4I	CCNNNNNNNGG	1 cut(s)	656
Bse118I	RCCGGY	1 cut(s)	534
Bse1I	ACTGG	7 cut(s)	202, 316, 343, 399, 804, 1041, 1042
Bse3DI	GCAATG	1 cut(s)	708
BseBI	CCWGG	3 cut(s)	242, 509, 789
BseDI	CCNNGG	6 cut(s)	69, 105, 240, 529, 637, 788
BseGI	GGATG	4 cut(s)	118, 539, 955, 982
BseLI	CCNNNNNNNGG	1 cut(s)	656
BseMI	GCAATG	1 cut(s)	708
BseMII	CTCAG	2 cut(s)	160, 764
BseNI	ACTGG	7 cut(s)	202, 316, 343, 399, 804, 1041, 1042
BseRI	GAGGAG	1 cut(s)	94
BseSI	GKGCMC	1 cut(s)	497
BseX3I	CGGCCG	1 cut(s)	532
BsgI	GTGCAG	1 cut(s)	928
Bsh1285I	CGRYCG	1 cut(s)	535
BshFI	GGCC	3 cut(s)	171, 534, 1040
BshNI	GGYRCC	1 cut(s)	494
BsiEI	CGRYCG	1 cut(s)	535
BsiSI	CCGG	5 cut(s)	117, 172, 183, 531, 535
BslFI	GGGAC	5 cut(s)	62, 113, 188, 349, 910
BslI	CCNNNNNNNGG	1 cut(s)	656
BsmFI	GGGAC	5 cut(s)	62, 113, 188, 349, 910
BsnI	GGCC	3 cut(s)	171, 534, 1040
Bsp1286I	GDGCHC	2 cut(s)	497, 625
Bsp143I	GATC	2 cut(s)	280, 792
BspACI	CCGC	1 cut(s)	332
BspANI	GGCC	3 cut(s)	171, 534, 1040
BspCNI	CTCAG	2 cut(s)	159, 765
BspLI	GGNNCC	4 cut(s)	78, 282, 496, 622
BspMAI	CTGCAG	1 cut(s)	85
BspMI	ACCTGC	2 cut(s)	277, 950
BspPI	GGATC	3 cut(s)	275, 288, 800
BspT107I	GGYRCC	1 cut(s)	494
BsrDI	GCAATG	1 cut(s)	708
BsrFI	RCCGGY	1 cut(s)	534
BsrI	ACTGG	7 cut(s)	202, 316, 343, 399, 804, 1041, 1042
BssAI	RCCGGY	1 cut(s)	534
BssECI	CCNNGG	6 cut(s)	69, 105, 240, 529, 637, 788
BssMI	GATC	2 cut(s)	280, 792
Bst2UI	CCWGG	3 cut(s)	242, 509, 789
BstC8I	GCNNGC	5 cut(s)	191, 665, 883, 919, 955
BstDEI	CTNAG	3 cut(s)	146, 425, 773
BstF5I	GGATG	4 cut(s)	118, 539, 955, 982
BstKTI	GATC	2 cut(s)	283, 795
BstMBI	GATC	2 cut(s)	280, 792
BstMCI	CGRYCG	1 cut(s)	535
BstMWI	GCNNNNNNNGC	1 cut(s)	887
BstNI	CCWGG	3 cut(s)	242, 509, 789
BstNSI	RCATGY	2 cut(s)	921, 937
BstSCI	CCNGG	6 cut(s)	116, 171, 240, 507, 529, 787
BstSFI	CTRYAG	2 cut(s)	81, 225
BstSLI	GKGCMC	1 cut(s)	497
BstV2I	GAAGAC	1 cut(s)	850
BstX2I	RGATCY	1 cut(s)	280
BstXI	CCANNNNNNTGG	1 cut(s)	248
BstYI	RGATCY	1 cut(s)	280
BstZI	CGGCCG	1 cut(s)	532
BsuRI	GGCC	3 cut(s)	171, 534, 1040
BtsCI	GGATG	4 cut(s)	118, 539, 955, 982
BtsIMutI	CAGTG	1 cut(s)	309
BveI	ACCTGC	2 cut(s)	277, 950
Cac8I	GCNNGC	5 cut(s)	191, 665, 883, 919, 955
Cfr10I	RCCGGY	1 cut(s)	534
Cfr13I	GGNCC	2 cut(s)	76, 1039
Csp6I	GTAC	4 cut(s)	266, 400, 913, 1034
CviAII	CATG	5 cut(s)	21, 490, 691, 918, 934
CviQI	GTAC	4 cut(s)	266, 400, 913, 1034
DdeI	CTNAG	3 cut(s)	146, 425, 773
DpnI	GATC	2 cut(s)	282, 794
DpnII	GATC	2 cut(s)	280, 792
EaeI	YGGCCR	2 cut(s)	169, 532
EagI	CGGCCG	1 cut(s)	532
EclXI	CGGCCG	1 cut(s)	532
Eco24I	GRGCYC	1 cut(s)	625
Eco47I	GGWCC	1 cut(s)	76
Eco52I	CGGCCG	1 cut(s)	532
Eco57I	CTGAAG	1 cut(s)	342
EcoRII	CCWGG	3 cut(s)	240, 507, 787
EcoT38I	GRGCYC	1 cut(s)	625
FaeI	CATG	5 cut(s)	24, 493, 694, 921, 937
FalI	AAGNNNNNCTT	4 cut(s)	832, 864, 835, 867
FaqI	GGGAC	5 cut(s)	62, 113, 188, 349, 910
FatI	CATG	5 cut(s)	20, 489, 690, 917, 933
FauI	CCCGC	1 cut(s)	325
FauNDI	CATATG	1 cut(s)	834
FokI	GGATG	4 cut(s)	125, 526, 962, 969
FriOI	GRGCYC	1 cut(s)	625
FspBI	CTAG	1 cut(s)	50
GsuI	CTGGAG	2 cut(s)	416, 755
HaeIII	GGCC	3 cut(s)	171, 534, 1040
HapII	CCGG	5 cut(s)	117, 172, 183, 531, 535
Hin1II	CATG	5 cut(s)	24, 493, 694, 921, 937
HinfI	GANTC	4 cut(s)	101, 133, 252, 974
HpaII	CCGG	5 cut(s)	117, 172, 183, 531, 535
HphI	GGTGA	4 cut(s)	46, 310, 880, 931
Hpy166II	GTNNAC	1 cut(s)	939
Hpy188I	TCNGA	8 cut(s)	149, 301, 361, 417, 620, 641, 654, 1015
Hpy188III	TCNNGA	1 cut(s)	734
Hpy8I	GTNNAC	1 cut(s)	939
HpyAV	CCTTC	3 cut(s)	294, 748, 858
HpyCH4IV	ACGT	3 cut(s)	480, 687, 899
HpyF10VI	GCNNNNNNNGC	1 cut(s)	887
HpyF3I	CTNAG	3 cut(s)	146, 425, 773
HpySE526I	ACGT	3 cut(s)	480, 687, 899
Hsp92II	CATG	5 cut(s)	24, 493, 694, 921, 937
Kzo9I	GATC	2 cut(s)	280, 792
LmnI	GCTCC	2 cut(s)	470, 620
LweI	GCATC	2 cut(s)	103, 940
MaeI	CTAG	1 cut(s)	50
MaeII	ACGT	3 cut(s)	480, 687, 899
MaeIII	GTNAC	4 cut(s)	52, 316, 481, 868
MalI	GATC	2 cut(s)	282, 794
MboI	GATC	2 cut(s)	280, 792
MboII	GAAGA	2 cut(s)	20, 855
MflI	RGATCY	1 cut(s)	280
MhlI	GDGCHC	2 cut(s)	497, 625
MluCI	AATT	5 cut(s)	60, 141, 154, 582, 592
MlyI	GAGTC	2 cut(s)	95, 246
MmeI	TCCRAC	2 cut(s)	580, 1010
MnlI	CCTC	8 cut(s)	79, 115, 195, 434, 635, 647, 660, 859
MroXI	GAANNNNTTC	1 cut(s)	847
MspI	CCGG	5 cut(s)	117, 172, 183, 531, 535
MspR9I	CCNGG	6 cut(s)	118, 173, 242, 509, 531, 789
MvaI	CCWGG	3 cut(s)	242, 509, 789
MwoI	GCNNNNNNNGC	1 cut(s)	887
NciI	CCSGG	3 cut(s)	118, 173, 531
NdeI	CATATG	1 cut(s)	834
NdeII	GATC	2 cut(s)	280, 792
NlaIII	CATG	5 cut(s)	24, 493, 694, 921, 937
NlaIV	GGNNCC	4 cut(s)	78, 282, 496, 622
NmuCI	GTSAC	3 cut(s)	52, 316, 868
NspI	RCATGY	2 cut(s)	921, 937
PaeI	GCATGC	1 cut(s)	921
PaqCI	CACCTGC	1 cut(s)	950
PciI	ACATGT	1 cut(s)	933
PdmI	GAANNNNTTC	1 cut(s)	847
PfeI	GAWTC	2 cut(s)	133, 974
PfoI	TCCNGGA	1 cut(s)	507
PleI	GAGTC	2 cut(s)	95, 246
PpsI	GAGTC	2 cut(s)	95, 246
PscI	ACATGT	1 cut(s)	933
Psp6I	CCWGG	3 cut(s)	240, 507, 787
PspGI	CCWGG	3 cut(s)	240, 507, 787
PspN4I	GGNNCC	4 cut(s)	78, 282, 496, 622
PspPI	GGNCC	2 cut(s)	76, 1039
PstI	CTGCAG	1 cut(s)	85
PsuI	RGATCY	1 cut(s)	280
RsaI	GTAC	4 cut(s)	267, 401, 914, 1035
RsaNI	GTAC	4 cut(s)	266, 400, 913, 1034
Sau3AI	GATC	2 cut(s)	280, 792
Sau96I	GGNCC	2 cut(s)	76, 1039
ScaI	AGTACT	1 cut(s)	401
SchI	GAGTC	2 cut(s)	95, 246
ScrFI	CCNGG	6 cut(s)	118, 173, 242, 509, 531, 789
SduI	GDGCHC	2 cut(s)	497, 625
SfaNI	GCATC	2 cut(s)	103, 940
SfcI	CTRYAG	2 cut(s)	81, 225
SinI	GGWCC	1 cut(s)	76
SphI	GCATGC	1 cut(s)	921
Sse9I	AATT	5 cut(s)	60, 141, 154, 582, 592
SsiI	CCGC	1 cut(s)	332
SspMI	CTAG	1 cut(s)	50
StyD4I	CCNGG	6 cut(s)	116, 171, 240, 507, 529, 787
TaiI	ACGT	3 cut(s)	483, 690, 902
TaqI	TCGA	1 cut(s)	925
TasI	AATT	5 cut(s)	60, 141, 154, 582, 592
TatI	WGTACW	2 cut(s)	399, 1033
TfiI	GAWTC	2 cut(s)	133, 974
TscAI	CASTG	1 cut(s)	316
TseFI	GTSAC	3 cut(s)	52, 316, 868
Tsp45I	GTSAC	3 cut(s)	52, 316, 868
TspDTI	ATGAA	6 cut(s)	9, 223, 586, 966, 971, 1040
TspGWI	ACGGA	2 cut(s)	483, 962
TspRI	CASTG	1 cut(s)	316
VpaK11BI	GGWCC	1 cut(s)	76
XapI	RAATTY	1 cut(s)	592
XceI	RCATGY	2 cut(s)	921, 937
XcmI	CCANNNNNNNNNTGG	2 cut(s)	505, 688
XmnI	GAANNNNTTC	1 cut(s)	847
XspI	CTAG	1 cut(s)	50
ZrmI	AGTACT	1 cut(s)	401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.