Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0008949

Physical Location & Seq

Genomic Coordinates Forward (+)

36716801 .. 36757710

Gene Structure 40910 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG192600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGCGGATTTATCACTATCTGTCTTCAAACCAAACCCTTGTCCGACCGCCTCCCCTACTCATAGAACTCTTCCTACTCCGATTCTGTCCAAAGAGAGGTCGTCGAAGCCGCTCACTTTTGGTCGCGTGCTGCACTTCGTCGTCGCCGCTATGGGATGTCCTCTTCATAATGCTATTATTTGGATGGCTGTGTCCTTTGCACAAATTGCTGAAACATCAAATACTTTGTATAGCTTTCCATGTCAAAATGTTGATGAAGTTGCACATTCTGAGCAACAATTTAGAGATGCCAACCAAGGTACTGGTGCAGTTGTGACTGAAGGTCTATTTACAACTATAGAAGATTGTGGGAAAAAAAATTTTGAGGCACCAGAAAGTGTTCCATCCTCTTCTTCGTGTTCTTTGGTTTTGGGATTTGCTTTGTTCATACCTAAGAAGATAAACAACCTTCTATGGATCTGCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

155

Amino Acids

16.89

Weight (kDa)

6.88

Isoelectric Point (pI)

38.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008949)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04570
fragaria_vesca	FvH4_6g41874 FvH4_6g41874
malus_domestica	MD09G1116400.v1.1 MD09G1116500.v1.1
prunus_persica	Prupe.3G208200_v2.0.a1 Prupe.3G208200_v2.0.a1 Prupe.3G208300_v2.0.a1
pyrus_communis	pycom09g04080
rosa_chinensis	RchiOBHm_Chr2g0157761
rosa_laevigata	RLG00000021016
rosa_multiflora	Rmu_co8160066.1_g000001 Rmu_sc0001275.1_g000028 Rmu_sc0019633.1_g000007
rosa_roxburghii	Rroxscaffold_2G00091980
rosa_rugosa	Rorug02G0463300
rosa_samantha	Rh1AG192600 Rh2AG528500 Rh2BG542500 Rh2CG512800 Rh2DG551500
rosa_wichuraiana	Rw2G043700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	367
AccBSI	CCGCTC	1 cut(s)	112
AccII	CGCG	1 cut(s)	126
AciI	CCGC	4 cut(s)	5, 48, 110, 147
AclWI	GGATC	1 cut(s)	464
AcsI	RAATTY	1 cut(s)	358
AcuI	CTGAAG	1 cut(s)	339
AfaI	GTAC	1 cut(s)	301
AfiI	CCNNNNNNNGG	1 cut(s)	96
AgsI	TTSAA	1 cut(s)	28
AhdI	GACNNNNNGTC	1 cut(s)	321
AluBI	AGCT	1 cut(s)	234
AluI	AGCT	1 cut(s)	234
AlwI	GGATC	1 cut(s)	464
ApeKI	GCWGC	1 cut(s)	130
ApoI	RAATTY	1 cut(s)	358
Asp700I	GAANNNNTTC	1 cut(s)	378
BanI	GGYRCC	1 cut(s)	367
BbsI	GAAGAC	1 cut(s)	16
BbvI	GCAGC	1 cut(s)	117
BccI	CCATC	2 cut(s)	178, 391
BfmI	CTRYAG	2 cut(s)	336, 460
BisI	GCNGC	3 cut(s)	110, 131, 147
BlsI	GCNGC	3 cut(s)	111, 132, 148
BmeRI	GACNNNNNGTC	1 cut(s)	321
BmiI	GGNNCC	1 cut(s)	369
BmsI	GCATC	1 cut(s)	277
BpiI	GAAGAC	1 cut(s)	16
BsaJI	CCNNGG	1 cut(s)	295
Bsc4I	CCNNNNNNNGG	1 cut(s)	96
Bse1I	ACTGG	1 cut(s)	307
BseDI	CCNNGG	1 cut(s)	295
BseGI	GGATG	3 cut(s)	161, 189, 383
BseLI	CCNNNNNNNGG	1 cut(s)	96
BseMII	CTCAG	1 cut(s)	261
BseNI	ACTGG	1 cut(s)	307
BseXI	GCAGC	1 cut(s)	117
BsgI	GTGCAG	2 cut(s)	116, 327
Bsh1236I	CGCG	1 cut(s)	126
Bsh1285I	CGRYCG	1 cut(s)	48
BshNI	GGYRCC	1 cut(s)	367
BsiEI	CGRYCG	1 cut(s)	48
BslI	CCNNNNNNNGG	1 cut(s)	96
Bsp143I	GATC	1 cut(s)	456
BspACI	CCGC	4 cut(s)	5, 48, 110, 147
BspCNI	CTCAG	1 cut(s)	262
BspFNI	CGCG	1 cut(s)	126
BspLI	GGNNCC	1 cut(s)	369
BspMAI	CTGCAG	1 cut(s)	464
BspPI	GGATC	1 cut(s)	464
BspT107I	GGYRCC	1 cut(s)	367
BsrBI	CCGCTC	1 cut(s)	112
BsrI	ACTGG	1 cut(s)	307
BssECI	CCNNGG	1 cut(s)	295
BssMI	GATC	1 cut(s)	456
BssT1I	CCWWGG	1 cut(s)	295
Bst6I	CTCTTC	3 cut(s)	75, 168, 394
BstAPI	GCANNNNNTGC	1 cut(s)	206
BstC8I	GCNNGC	1 cut(s)	128
BstDEI	CTNAG	2 cut(s)	270, 432
BstF5I	GGATG	3 cut(s)	161, 189, 383
BstFNI	CGCG	1 cut(s)	126
BstKTI	GATC	1 cut(s)	459
BstMBI	GATC	1 cut(s)	456
BstMCI	CGRYCG	1 cut(s)	48
BstMWI	GCNNNNNNNGC	1 cut(s)	206
BstSFI	CTRYAG	2 cut(s)	336, 460
BstUI	CGCG	1 cut(s)	126
BstV1I	GCAGC	1 cut(s)	117
BstV2I	GAAGAC	1 cut(s)	16
BstX2I	RGATCY	1 cut(s)	456
BstXI	CCANNNNNNTGG	1 cut(s)	302
BstYI	RGATCY	1 cut(s)	456
BtsCI	GGATG	3 cut(s)	161, 189, 383
Cac8I	GCNNGC	1 cut(s)	128
Csp6I	GTAC	1 cut(s)	300
CviAII	CATG	1 cut(s)	240
CviJI	RGCY	3 cut(s)	109, 188, 234
CviKI_1	RGCY	3 cut(s)	109, 188, 234
CviQI	GTAC	1 cut(s)	300
DdeI	CTNAG	2 cut(s)	270, 432
DpnI	GATC	1 cut(s)	458
DpnII	GATC	1 cut(s)	456
DriI	GACNNNNNGTC	1 cut(s)	321
Eam1104I	CTCTTC	3 cut(s)	75, 168, 394
Eam1105I	GACNNNNNGTC	1 cut(s)	321
EarI	CTCTTC	3 cut(s)	75, 168, 394
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	295
Eco57I	CTGAAG	1 cut(s)	339
EcoT14I	CCWWGG	1 cut(s)	295
ErhI	CCWWGG	1 cut(s)	295
FaeI	CATG	1 cut(s)	243
FaiI	YATR	8 cut(s)	63, 152, 168, 231, 241, 338, 428, 454
FatI	CATG	1 cut(s)	239
Fnu4HI	GCNGC	3 cut(s)	110, 131, 147
FokI	GGATG	3 cut(s)	168, 196, 370
Fsp4HI	GCNGC	3 cut(s)	110, 131, 147
GluI	GCNGC	3 cut(s)	110, 131, 147
Hin1II	CATG	1 cut(s)	243
HinfI	GANTC	1 cut(s)	82
Hpy188I	TCNGA	3 cut(s)	45, 81, 271
Hpy99I	CGWCG	3 cut(s)	106, 143, 146
HpyAV	CCTTC	2 cut(s)	314, 458
HpyCH4V	TGCA	5 cut(s)	133, 200, 263, 308, 462
HpyF10VI	GCNNNNNNNGC	1 cut(s)	206
HpyF3I	CTNAG	2 cut(s)	270, 432
Hsp92II	CATG	1 cut(s)	243
Kzo9I	GATC	1 cut(s)	456
LpnPI	CCDG	2 cut(s)	288, 384
Lsp1109I	GCAGC	1 cut(s)	117
LweI	GCATC	1 cut(s)	277
MaeIII	GTNAC	1 cut(s)	313
MalI	GATC	1 cut(s)	458
MbiI	CCGCTC	1 cut(s)	112
MboI	GATC	1 cut(s)	456
MboII	GAAGA	7 cut(s)	16, 62, 155, 353, 381, 384, 448
MflI	RGATCY	1 cut(s)	456
MluCI	AATT	3 cut(s)	204, 278, 358
MmeI	TCCRAC	1 cut(s)	68
MnlI	CCTC	5 cut(s)	61, 90, 171, 358, 397
MroXI	GAANNNNTTC	1 cut(s)	378
MvnI	CGCG	1 cut(s)	126
MwoI	GCNNNNNNNGC	1 cut(s)	206
NdeII	GATC	1 cut(s)	456
NlaIII	CATG	1 cut(s)	243
NlaIV	GGNNCC	1 cut(s)	369
NmuCI	GTSAC	1 cut(s)	313
PdmI	GAANNNNTTC	1 cut(s)	378
PfeI	GAWTC	1 cut(s)	82
PkrI	GCNGC	3 cut(s)	111, 132, 148
PspN4I	GGNNCC	1 cut(s)	369
PsrI	GAACNNNNNNTAC	2 cut(s)	58, 90
PstI	CTGCAG	1 cut(s)	464
PsuI	RGATCY	1 cut(s)	456
RsaI	GTAC	1 cut(s)	301
RsaNI	GTAC	1 cut(s)	300
SatI	GCNGC	3 cut(s)	110, 131, 147
Sau3AI	GATC	1 cut(s)	456
SetI	ASST	6 cut(s)	101, 236, 301, 325, 433, 450
SfaNI	GCATC	1 cut(s)	277
SfcI	CTRYAG	2 cut(s)	336, 460
SgeI	CNNG	8 cut(s)	51, 137, 139, 252, 308, 315, 383, 408
Sse9I	AATT	3 cut(s)	204, 278, 358
SsiI	CCGC	4 cut(s)	5, 48, 110, 147
StyI	CCWWGG	1 cut(s)	295
TaqI	TCGA	1 cut(s)	104
TasI	AATT	3 cut(s)	204, 278, 358
TauI	GCSGC	2 cut(s)	112, 149
TfiI	GAWTC	1 cut(s)	82
TseFI	GTSAC	1 cut(s)	313
TseI	GCWGC	1 cut(s)	130
Tsp45I	GTSAC	1 cut(s)	313
TspDTI	ATGAA	3 cut(s)	155, 270, 415
XapI	RAATTY	1 cut(s)	358
XmnI	GAANNNNTTC	1 cut(s)	378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.