Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0008949

Physical Location & Seq

Genomic Coordinates Forward (+)

21447456 .. 21450286

Gene Structure 2831 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G208300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGGCAAACTTGCACATTTCATGGCTTCTTCTAGCTCAATGCCTGTTGCTAGTCACCAGAATTACTGCCAAAGTCCCAGCAGTCGTCGTGTTCGGGGACTCTTCGGTTGATGCTGGGAACAACAATCAGATTCCCACAATTGCCAGGAGTAACTTTCAGCCTTATGGCCGGGACTTTTCCGGTGGCAAGCCGACTGGGAGGTTCTCCAACGGCAGAGTGCCTACAGATTTCATCTCCCAGGCTCTTGGACTCAGACCATTCATACCTGCCTACTTGGATCCTTCCCATAGCATATCAGATTTTGCCATTGGTGTCACCTTTGCTTCCGCTGGGACTGGCTATGATACTGCAACTTCAGATGTGCTGTCTGTGATACCACTATGGAAGCAACTGGAGTACTACAAGGAATACCAGAACAAACTGAGACTTTATCTTGGAGGAAACAAAGCAAACGAAACAATCAATGGAGCTTTGCACATTATGAGCTTAGGGACCAATGACTTCCTGGAAAACTACTACTCATACCCCGGCCGGTCATCCCAATACTCTATCCAACAGTACCAATATCTTCTCATTGGAATTGCAGGAAATTTCATCAAGCAACTCTACCATCTTGGAGCCCGGAAAATCTCCCTCGGAGGTCTGCCTCCGATGGGGTGCTTGCCATTGGAGAGAACCACAAACATCATGGGTGGAAATGACTGCATTGAAGATTACAACAATGTTGCTCTGGAGTTCAATGGCAAGTTGAATGGCTTGACCACAAACCTCAACAAAGAGCTTCCTGGTCTCAAACTTGTGTTTTCAAACCCATATTACATTTTCCTGCAGATGATAAGAAGACCTTCTTTGTATGGATTTGAAGTGACATCAGTAGCTTGCTGTGCCACAGGGATGTTTGAAATGGGGTACGCATGCAATCGAAACAACATGCTCACCTGCACAGATGCAAGCAAATATATATTCTGGGATTCTTTTCACCCTACAGAGAAAGCAAACCATATCATCTCTGATTATGTGGTGAAAAATGTACTGGCCCAGTTTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

350

Amino Acids

38.75

Weight (kDa)

8.07

Isoelectric Point (pI)

36.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008949)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04570
fragaria_vesca	FvH4_6g41874 FvH4_6g41874
malus_domestica	MD09G1116400.v1.1 MD09G1116500.v1.1
prunus_persica	Prupe.3G208200_v2.0.a1 Prupe.3G208200_v2.0.a1 Prupe.3G208300_v2.0.a1
pyrus_communis	pycom09g04080
rosa_chinensis	RchiOBHm_Chr2g0157761
rosa_laevigata	RLG00000021016
rosa_multiflora	Rmu_co8160066.1_g000001 Rmu_sc0001275.1_g000028 Rmu_sc0019633.1_g000007
rosa_roxburghii	Rroxscaffold_2G00091980
rosa_rugosa	Rorug02G0463300
rosa_samantha	Rh1AG192600 Rh2AG528500 Rh2BG542500 Rh2CG512800 Rh2DG551500
rosa_wichuraiana	Rw2G043700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	947
Acc36I	ACCTGC	2 cut(s)	274, 947
AciI	CCGC	1 cut(s)	327
AclWI	GGATC	2 cut(s)	272, 285
AcoI	YGGCCR	2 cut(s)	166, 529
AcsI	RAATTY	1 cut(s)	589
AcuI	CTGAAG	1 cut(s)	339
AfaI	GTAC	4 cut(s)	398, 560, 911, 1032
AfiI	CCNNNNNNNGG	1 cut(s)	653
AgsI	TTSAA	6 cut(s)	710, 739, 751, 807, 863, 902
AjnI	CCWGG	4 cut(s)	143, 237, 504, 784
AluBI	AGCT	5 cut(s)	35, 470, 486, 781, 878
AluI	AGCT	5 cut(s)	35, 470, 486, 781, 878
Alw26I	GTCTC	2 cut(s)	418, 794
AlwI	GGATC	2 cut(s)	272, 285
AoxI	GGCC	3 cut(s)	166, 529, 1035
ApoI	RAATTY	1 cut(s)	589
Asp700I	GAANNNNTTC	1 cut(s)	844
AspS9I	GGNCC	2 cut(s)	492, 1036
AsuC2I	CCSGG	3 cut(s)	170, 528, 622
AsuHPI	GGTGA	5 cut(s)	46, 307, 928, 971, 1033
AvaII	GGWCC	1 cut(s)	492
BamHI	GGATCC	1 cut(s)	277
BanII	GRGCYC	1 cut(s)	622
BbsI	GAAGAC	1 cut(s)	847
BccI	CCATC	2 cut(s)	618, 646
BceAI	ACGGC	1 cut(s)	226
BciT130I	CCWGG	4 cut(s)	145, 239, 506, 786
BcnI	CCSGG	3 cut(s)	170, 528, 622
BcoDI	GTCTC	2 cut(s)	418, 794
BfaI	CTAG	2 cut(s)	32, 50
BfmI	CTRYAG	3 cut(s)	222, 827, 984
BfuAI	ACCTGC	2 cut(s)	274, 947
BmcAI	AGTACT	1 cut(s)	398
Bme1390I	CCNGG	7 cut(s)	145, 170, 239, 506, 528, 622, 786
Bme18I	GGWCC	1 cut(s)	492
BmgT120I	GGNCC	2 cut(s)	492, 1036
BmiI	GGNNCC	3 cut(s)	279, 493, 619
BmrFI	CCNGG	7 cut(s)	145, 170, 239, 506, 528, 622, 786
BmrI	ACTGGG	2 cut(s)	204, 1033
BmsI	GCATC	2 cut(s)	100, 937
BmuI	ACTGGG	2 cut(s)	204, 1033
BpiI	GAAGAC	1 cut(s)	847
BpmI	CTGGAG	2 cut(s)	413, 752
Bpu10I	CCTNAGC	1 cut(s)	487
BpuMI	CCSGG	3 cut(s)	170, 528, 622
BsaI	GGTCTC	1 cut(s)	794
BsaJI	CCNNGG	3 cut(s)	237, 526, 634
BsaWI	WCCGGW	1 cut(s)	179
Bsc4I	CCNNNNNNNGG	1 cut(s)	653
Bse118I	RCCGGY	1 cut(s)	531
Bse1I	ACTGG	5 cut(s)	199, 340, 396, 1038, 1039
BseBI	CCWGG	4 cut(s)	145, 239, 506, 786
BseDI	CCNNGG	3 cut(s)	237, 526, 634
BseGI	GGATG	2 cut(s)	536, 900
BseLI	CCNNNNNNNGG	1 cut(s)	653
BseMII	CTCAG	2 cut(s)	265, 413
BseNI	ACTGG	5 cut(s)	199, 340, 396, 1038, 1039
BseX3I	CGGCCG	1 cut(s)	529
BseYI	CCCAGC	3 cut(s)	76, 113, 329
BsgI	GTGCAG	1 cut(s)	925
Bsh1285I	CGRYCG	1 cut(s)	532
BshFI	GGCC	3 cut(s)	168, 531, 1037
BsiEI	CGRYCG	1 cut(s)	532
BsiSI	CCGG	5 cut(s)	169, 180, 528, 532, 622
BslFI	GGGAC	5 cut(s)	59, 110, 185, 346, 505
BslI	CCNNNNNNNGG	1 cut(s)	653
BsmAI	GTCTC	2 cut(s)	418, 794
BsmFI	GGGAC	5 cut(s)	59, 110, 185, 346, 505
BsnI	GGCC	3 cut(s)	168, 531, 1037
Bso31I	GGTCTC	1 cut(s)	794
Bsp1286I	GDGCHC	1 cut(s)	622
Bsp143I	GATC	1 cut(s)	277
BspACI	CCGC	1 cut(s)	327
BspANI	GGCC	3 cut(s)	168, 531, 1037
BspCNI	CTCAG	2 cut(s)	264, 414
BspLI	GGNNCC	3 cut(s)	279, 493, 619
BspMAI	CTGCAG	1 cut(s)	831
BspMI	ACCTGC	2 cut(s)	274, 947
BspPI	GGATC	2 cut(s)	272, 285
BspTNI	GGTCTC	1 cut(s)	794
BsrFI	RCCGGY	1 cut(s)	531
BsrI	ACTGG	5 cut(s)	199, 340, 396, 1038, 1039
BssAI	RCCGGY	1 cut(s)	531
BssECI	CCNNGG	3 cut(s)	237, 526, 634
BssMI	GATC	1 cut(s)	277
Bst2UI	CCWGG	4 cut(s)	145, 239, 506, 786
Bst4CI	ACNGT	1 cut(s)	558
Bst6I	CTCTTC	1 cut(s)	106
BstC8I	GCNNGC	5 cut(s)	188, 662, 880, 916, 952
BstDEI	CTNAG	3 cut(s)	251, 422, 487
BstF5I	GGATG	2 cut(s)	536, 900
BstKTI	GATC	1 cut(s)	280
BstMAI	GTCTC	2 cut(s)	418, 794
BstMBI	GATC	1 cut(s)	277
BstMCI	CGRYCG	1 cut(s)	532
BstMWI	GCNNNNNNNGC	1 cut(s)	884
BstNI	CCWGG	4 cut(s)	145, 239, 506, 786
BstNSI	RCATGY	2 cut(s)	918, 934
BstSCI	CCNGG	7 cut(s)	143, 168, 237, 504, 526, 620, 784
BstSFI	CTRYAG	3 cut(s)	222, 827, 984
BstV2I	GAAGAC	1 cut(s)	847
BstX2I	RGATCY	1 cut(s)	277
BstXI	CCANNNNNNTGG	1 cut(s)	245
BstYI	RGATCY	1 cut(s)	277
BstZI	CGGCCG	1 cut(s)	529
BsuRI	GGCC	3 cut(s)	168, 531, 1037
BtsCI	GGATG	2 cut(s)	536, 900
BveI	ACCTGC	2 cut(s)	274, 947
Cac8I	GCNNGC	5 cut(s)	188, 662, 880, 916, 952
Cfr10I	RCCGGY	1 cut(s)	531
Cfr13I	GGNCC	2 cut(s)	492, 1036
Csp6I	GTAC	4 cut(s)	397, 559, 910, 1031
CviAII	CATG	4 cut(s)	21, 688, 915, 931
CviQI	GTAC	4 cut(s)	397, 559, 910, 1031
DdeI	CTNAG	3 cut(s)	251, 422, 487
DpnI	GATC	1 cut(s)	279
DpnII	GATC	1 cut(s)	277
EaeI	YGGCCR	2 cut(s)	166, 529
EagI	CGGCCG	1 cut(s)	529
Eam1104I	CTCTTC	1 cut(s)	106
EarI	CTCTTC	1 cut(s)	106
EclXI	CGGCCG	1 cut(s)	529
Eco24I	GRGCYC	1 cut(s)	622
Eco31I	GGTCTC	1 cut(s)	794
Eco47I	GGWCC	1 cut(s)	492
Eco52I	CGGCCG	1 cut(s)	529
Eco57I	CTGAAG	1 cut(s)	339
EcoRII	CCWGG	4 cut(s)	143, 237, 504, 784
EcoT38I	GRGCYC	1 cut(s)	622
FaeI	CATG	4 cut(s)	24, 691, 918, 934
FalI	AAGNNNNNCTT	4 cut(s)	829, 861, 832, 864
FaqI	GGGAC	5 cut(s)	59, 110, 185, 346, 505
FatI	CATG	4 cut(s)	20, 687, 914, 930
FokI	GGATG	2 cut(s)	523, 907
FriOI	GRGCYC	1 cut(s)	622
FspBI	CTAG	2 cut(s)	32, 50
GsaI	CCCAGC	3 cut(s)	80, 117, 333
GsuI	CTGGAG	2 cut(s)	413, 752
HaeIII	GGCC	3 cut(s)	168, 531, 1037
HapII	CCGG	5 cut(s)	169, 180, 528, 532, 622
Hin1II	CATG	4 cut(s)	24, 691, 918, 934
HinfI	GANTC	4 cut(s)	98, 130, 249, 971
HpaII	CCGG	5 cut(s)	169, 180, 528, 532, 622
HphI	GGTGA	5 cut(s)	46, 307, 928, 971, 1033
Hpy188I	TCNGA	7 cut(s)	129, 254, 298, 358, 638, 651, 1012
Hpy188III	TCNNGA	1 cut(s)	731
Hpy99I	CGWCG	1 cut(s)	89
HpyAV	CCTTC	2 cut(s)	291, 855
HpyCH4III	ACNGT	1 cut(s)	558
HpyCH4V	TGCA	9 cut(s)	13, 350, 475, 584, 705, 829, 918, 942, 950
HpyF10VI	GCNNNNNNNGC	1 cut(s)	884
HpyF3I	CTNAG	3 cut(s)	251, 422, 487
Hsp92II	CATG	4 cut(s)	24, 691, 918, 934
Kzo9I	GATC	1 cut(s)	277
LmnI	GCTCC	2 cut(s)	467, 617
LweI	GCATC	2 cut(s)	100, 937
MaeI	CTAG	2 cut(s)	32, 50
MaeIII	GTNAC	4 cut(s)	52, 149, 313, 865
MalI	GATC	1 cut(s)	279
MboI	GATC	1 cut(s)	277
MboII	GAAGA	5 cut(s)	20, 93, 560, 722, 852
MfeI	CAATTG	1 cut(s)	138
MflI	RGATCY	1 cut(s)	277
MhlI	GDGCHC	1 cut(s)	622
MluCI	AATT	4 cut(s)	60, 138, 579, 589
MlyI	GAGTC	2 cut(s)	92, 243
MmeI	TCCRAC	2 cut(s)	231, 577
MnlI	CCTC	6 cut(s)	192, 431, 632, 644, 657, 779
MroXI	GAANNNNTTC	1 cut(s)	844
MslI	CAYNNNNRTG	1 cut(s)	893
MspA1I	CMGCKG	1 cut(s)	329
MspI	CCGG	5 cut(s)	169, 180, 528, 532, 622
MspR9I	CCNGG	7 cut(s)	145, 170, 239, 506, 528, 622, 786
MunI	CAATTG	1 cut(s)	138
MvaI	CCWGG	4 cut(s)	145, 239, 506, 786
MwoI	GCNNNNNNNGC	1 cut(s)	884
NciI	CCSGG	3 cut(s)	170, 528, 622
NdeII	GATC	1 cut(s)	277
NlaIII	CATG	4 cut(s)	24, 691, 918, 934
NlaIV	GGNNCC	3 cut(s)	279, 493, 619
NmuCI	GTSAC	3 cut(s)	52, 313, 865
NspI	RCATGY	2 cut(s)	918, 934
PaeI	GCATGC	1 cut(s)	918
PaqCI	CACCTGC	1 cut(s)	947
PdmI	GAANNNNTTC	1 cut(s)	844
PfeI	GAWTC	2 cut(s)	130, 971
PfoI	TCCNGGA	1 cut(s)	504
PleI	GAGTC	2 cut(s)	92, 243
PpsI	GAGTC	2 cut(s)	92, 243
Psp6I	CCWGG	4 cut(s)	143, 237, 504, 784
PspFI	CCCAGC	3 cut(s)	76, 113, 329
PspGI	CCWGG	4 cut(s)	143, 237, 504, 784
PspN4I	GGNNCC	3 cut(s)	279, 493, 619
PspPI	GGNCC	2 cut(s)	492, 1036
PstI	CTGCAG	1 cut(s)	831
PsuI	RGATCY	1 cut(s)	277
RsaI	GTAC	4 cut(s)	398, 560, 911, 1032
RsaNI	GTAC	4 cut(s)	397, 559, 910, 1031
RseI	CAYNNNNRTG	1 cut(s)	893
Sau3AI	GATC	1 cut(s)	277
Sau96I	GGNCC	2 cut(s)	492, 1036
ScaI	AGTACT	1 cut(s)	398
SchI	GAGTC	2 cut(s)	92, 243
ScrFI	CCNGG	7 cut(s)	145, 170, 239, 506, 528, 622, 786
SduI	GDGCHC	1 cut(s)	622
SfaNI	GCATC	2 cut(s)	100, 937
SfcI	CTRYAG	3 cut(s)	222, 827, 984
SinI	GGWCC	1 cut(s)	492
SmiMI	CAYNNNNRTG	1 cut(s)	893
SphI	GCATGC	1 cut(s)	918
Sse9I	AATT	4 cut(s)	60, 138, 579, 589
SsiI	CCGC	1 cut(s)	327
SspMI	CTAG	2 cut(s)	32, 50
StyD4I	CCNGG	7 cut(s)	143, 168, 237, 504, 526, 620, 784
TaaI	ACNGT	1 cut(s)	558
TaqI	TCGA	1 cut(s)	922
TasI	AATT	4 cut(s)	60, 138, 579, 589
TatI	WGTACW	2 cut(s)	396, 1030
TfiI	GAWTC	2 cut(s)	130, 971
TseFI	GTSAC	3 cut(s)	52, 313, 865
Tsp45I	GTSAC	3 cut(s)	52, 313, 865
TspDTI	ATGAA	4 cut(s)	9, 220, 250, 583
VpaK11BI	GGWCC	1 cut(s)	492
XapI	RAATTY	1 cut(s)	589
XceI	RCATGY	2 cut(s)	918, 934
XcmI	CCANNNNNNNNNTGG	2 cut(s)	502, 685
XmnI	GAANNNNTTC	1 cut(s)	844
XspI	CTAG	2 cut(s)	32, 50
ZrmI	AGTACT	1 cut(s)	398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.