Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0019633.1

Orthogroup ID

OG0008949

Physical Location & Seq

Genomic Coordinates Forward (+)

38484 .. 40109

Gene Structure 1626 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0019633.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

atgattttgcagtctgtgataccgctatggaagcaattggactactacaaggaataccaagctaaactgagagcttaccagggaggaaatgaagcagacgaaacaatcaacgaagctttacacgtgatgagcttaggaactaatgacttcctggagaactactactccacatttccaccatcaggccgatcatcccaatacactacctcccaataccaagactttctcatcggaatcgcagcgaatttcgtgaaggaactctacaagctcggagctcggaaaatttccgtgggaggactgcctccaatggggtgcttgccattagagagaaccagtaatgtcatggatggaaatgactgcatttcgaattacaacgatgtggctttggagttcaatgacaagctgaataaggtgaccgtcagcctcaataaagagcttcctggaagcaaattggtgttctcaaatccttattttgttttcctgtatatgataagaaggccttctttttacggttttgaggtgacatcagtggcttgttgtgccacaggaatgtttgagatgggatatgcatgcaaccgaaacaacatgttcacatgcactgatgcaagcaaatacatcttctgggactccttccatcccacagagaaagcaaaccagatcatctctgattacatggtcacacgtgtcctgacccagtttctttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

234

Amino Acids

26.66

Weight (kDa)

5.46

Isoelectric Point (pI)

40.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008949)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04570
fragaria_vesca	FvH4_6g41874 FvH4_6g41874
malus_domestica	MD09G1116400.v1.1 MD09G1116500.v1.1
prunus_persica	Prupe.3G208200_v2.0.a1 Prupe.3G208200_v2.0.a1 Prupe.3G208300_v2.0.a1
pyrus_communis	pycom09g04080
rosa_chinensis	RchiOBHm_Chr2g0157761
rosa_laevigata	RLG00000021016
rosa_multiflora	Rmu_co8160066.1_g000001 Rmu_sc0001275.1_g000028 Rmu_sc0019633.1_g000007
rosa_roxburghii	Rroxscaffold_2G00091980
rosa_rugosa	Rorug02G0463300
rosa_samantha	Rh1AG192600 Rh2AG528500 Rh2BG542500 Rh2CG512800 Rh2DG551500
rosa_wichuraiana	Rw2G043700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	23
AcsI	RAATTY	2 cut(s)	244, 282
AcvI	CACGTG	2 cut(s)	124, 683
AfiI	CCNNNNNNNGG	2 cut(s)	182, 308
AflIII	ACRYGT	4 cut(s)	121, 585, 680, 682
AgsI	TTSAA	1 cut(s)	394
AjnI	CCWGG	3 cut(s)	78, 150, 439
AloI	GAACNNNNNNTCC	2 cut(s)	149, 181
AluBI	AGCT	8 cut(s)	62, 74, 116, 132, 268, 275, 403, 436
AluI	AGCT	8 cut(s)	62, 74, 116, 132, 268, 275, 403, 436
Alw21I	GWGCWC	1 cut(s)	277
AoxI	GGCC	2 cut(s)	184, 497
ApeKI	GCWGC	1 cut(s)	239
ApoI	RAATTY	2 cut(s)	244, 282
Asp700I	GAANNNNTTC	1 cut(s)	499
AsuHPI	GGTGA	2 cut(s)	424, 532
AsuII	TTCGAA	1 cut(s)	365
BanII	GRGCYC	1 cut(s)	277
BarI	GAAGNNNNNNTAC	2 cut(s)	245, 277
BbrPI	CACGTG	2 cut(s)	124, 683
Bbv12I	GWGCWC	1 cut(s)	277
BbvI	GCAGC	1 cut(s)	251
BccI	CCATC	4 cut(s)	187, 341, 553, 642
BciT130I	CCWGG	3 cut(s)	80, 152, 441
BisI	GCNGC	1 cut(s)	240
BlsI	GCNGC	1 cut(s)	241
Bme1390I	CCNGG	3 cut(s)	80, 152, 441
BmrFI	CCNGG	3 cut(s)	80, 152, 441
BmrI	ACTGGG	1 cut(s)	688
BmsI	GCATC	1 cut(s)	592
BmuI	ACTGGG	1 cut(s)	688
BpmI	CTGGAG	1 cut(s)	173
Bpu10I	CCTNAGC	1 cut(s)	133
Bpu14I	TTCGAA	1 cut(s)	365
BsaAI	YACGTR	2 cut(s)	124, 683
BsaJI	CCNNGG	2 cut(s)	79, 288
BsaXI	ACNNNNNCTCC	4 cut(s)	149, 179, 191, 221
Bsc4I	CCNNNNNNNGG	2 cut(s)	182, 308
Bse1I	ACTGG	2 cut(s)	333, 694
BseBI	CCWGG	3 cut(s)	80, 152, 441
BseDI	CCNNGG	2 cut(s)	79, 288
BseGI	GGATG	3 cut(s)	191, 352, 634
BseLI	CCNNNNNNNGG	2 cut(s)	182, 308
BseMII	CTCAG	1 cut(s)	59
BseNI	ACTGG	2 cut(s)	333, 694
BseXI	GCAGC	1 cut(s)	251
BshFI	GGCC	2 cut(s)	186, 499
BsiHKAI	GWGCWC	1 cut(s)	277
BslFI	GGGAC	1 cut(s)	638
BslI	CCNNNNNNNGG	2 cut(s)	182, 308
BsmFI	GGGAC	1 cut(s)	638
BsnI	GGCC	2 cut(s)	186, 499
Bsp119I	TTCGAA	1 cut(s)	365
Bsp1286I	GDGCHC	1 cut(s)	277
Bsp143I	GATC	2 cut(s)	188, 657
BspACI	CCGC	1 cut(s)	23
BspANI	GGCC	2 cut(s)	186, 499
BspCNI	CTCAG	1 cut(s)	60
BspT104I	TTCGAA	1 cut(s)	365
BsrI	ACTGG	2 cut(s)	333, 694
BssECI	CCNNGG	2 cut(s)	79, 288
BssMI	GATC	2 cut(s)	188, 657
Bst2UI	CCWGG	3 cut(s)	80, 152, 441
Bst4CI	ACNGT	2 cut(s)	418, 512
BstBAI	YACGTR	2 cut(s)	124, 683
BstBI	TTCGAA	1 cut(s)	365
BstC8I	GCNNGC	3 cut(s)	317, 571, 607
BstDEI	CTNAG	2 cut(s)	68, 133
BstDSI	CCRYGG	1 cut(s)	288
BstEII	GGTNACC	1 cut(s)	412
BstF5I	GGATG	3 cut(s)	191, 352, 634
BstKTI	GATC	2 cut(s)	191, 660
BstMBI	GATC	2 cut(s)	188, 657
BstMWI	GCNNNNNNNGC	2 cut(s)	31, 539
BstNI	CCWGG	3 cut(s)	80, 152, 441
BstNSI	RCATGY	3 cut(s)	573, 589, 597
BstPI	GGTNACC	1 cut(s)	412
BstSCI	CCNGG	3 cut(s)	78, 150, 439
BstV1I	GCAGC	1 cut(s)	251
BsuRI	GGCC	2 cut(s)	186, 499
BtgI	CCRYGG	1 cut(s)	288
BtsCI	GGATG	3 cut(s)	191, 352, 634
BtsIMutI	CAGTG	2 cut(s)	534, 597
Cac8I	GCNNGC	3 cut(s)	317, 571, 607
CviAII	CATG	5 cut(s)	343, 570, 586, 594, 673
DdeI	CTNAG	2 cut(s)	68, 133
DpnI	GATC	2 cut(s)	190, 659
DpnII	GATC	2 cut(s)	188, 657
Ecl136II	GAGCTC	1 cut(s)	275
Eco147I	AGGCCT	1 cut(s)	499
Eco24I	GRGCYC	1 cut(s)	277
Eco53kI	GAGCTC	1 cut(s)	275
Eco72I	CACGTG	2 cut(s)	124, 683
Eco91I	GGTNACC	1 cut(s)	412
EcoICRI	GAGCTC	1 cut(s)	275
EcoO65I	GGTNACC	1 cut(s)	412
EcoRII	CCWGG	3 cut(s)	78, 150, 439
EcoT22I	ATGCAT	1 cut(s)	571
EcoT38I	GRGCYC	1 cut(s)	277
FaeI	CATG	5 cut(s)	346, 573, 589, 597, 676
FaiI	YATR	9 cut(s)	28, 344, 486, 488, 567, 571, 587, 595, 674
FalI	AAGNNNNNCTT	4 cut(s)	484, 516, 487, 519
FaqI	GGGAC	1 cut(s)	638
FatI	CATG	5 cut(s)	342, 569, 585, 593, 672
Fnu4HI	GCNGC	1 cut(s)	240
FokI	GGATG	3 cut(s)	178, 359, 621
FriOI	GRGCYC	1 cut(s)	277
Fsp4HI	GCNGC	1 cut(s)	240
GluI	GCNGC	1 cut(s)	240
GsuI	CTGGAG	1 cut(s)	173
HaeIII	GGCC	2 cut(s)	186, 499
Hin1II	CATG	5 cut(s)	346, 573, 589, 597, 676
HindIII	AAGCTT	1 cut(s)	114
HinfI	GANTC	2 cut(s)	234, 626
HphI	GGTGA	2 cut(s)	424, 532
Hpy166II	GTNNAC	1 cut(s)	591
Hpy188I	TCNGA	4 cut(s)	233, 272, 279, 667
Hpy188III	TCNNGA	2 cut(s)	250, 688
Hpy8I	GTNNAC	1 cut(s)	591
HpyAV	CCTTC	4 cut(s)	247, 489, 510, 640
HpyCH4III	ACNGT	2 cut(s)	418, 512
HpyCH4IV	ACGT	2 cut(s)	123, 682
HpyCH4V	TGCA	6 cut(s)	10, 360, 569, 573, 597, 605
HpyF10VI	GCNNNNNNNGC	2 cut(s)	31, 539
HpyF3I	CTNAG	2 cut(s)	68, 133
HpySE526I	ACGT	2 cut(s)	123, 682
Hsp92II	CATG	5 cut(s)	346, 573, 589, 597, 676
Kzo9I	GATC	2 cut(s)	188, 657
LmnI	GCTCC	1 cut(s)	272
Lsp1109I	GCAGC	1 cut(s)	251
LweI	GCATC	1 cut(s)	592
MaeII	ACGT	2 cut(s)	123, 682
MaeIII	GTNAC	3 cut(s)	412, 520, 676
MalI	GATC	2 cut(s)	190, 659
MboI	GATC	2 cut(s)	188, 657
MboII	GAAGA	1 cut(s)	610
MfeI	CAATTG	1 cut(s)	35
MhlI	GDGCHC	1 cut(s)	277
MluCI	AATT	5 cut(s)	35, 244, 282, 367, 449
MlyI	GAGTC	1 cut(s)	620
MnlI	CCTC	6 cut(s)	77, 217, 287, 312, 434, 511
Mph1103I	ATGCAT	1 cut(s)	571
MroXI	GAANNNNTTC	1 cut(s)	499
MseI	TTAA	1 cut(s)	703
MslI	CAYNNNNRTG	1 cut(s)	548
MspR9I	CCNGG	3 cut(s)	80, 152, 441
MunI	CAATTG	1 cut(s)	35
MvaI	CCWGG	3 cut(s)	80, 152, 441
MwoI	GCNNNNNNNGC	2 cut(s)	31, 539
NdeII	GATC	2 cut(s)	188, 657
NlaIII	CATG	5 cut(s)	346, 573, 589, 597, 676
NmuCI	GTSAC	3 cut(s)	412, 520, 676
NsiI	ATGCAT	1 cut(s)	571
NspI	RCATGY	3 cut(s)	573, 589, 597
NspV	TTCGAA	1 cut(s)	365
PaeI	GCATGC	1 cut(s)	573
PceI	AGGCCT	1 cut(s)	499
PciI	ACATGT	1 cut(s)	585
PdmI	GAANNNNTTC	1 cut(s)	499
PfeI	GAWTC	1 cut(s)	234
PfoI	TCCNGGA	2 cut(s)	150, 439
PkrI	GCNGC	1 cut(s)	241
PleI	GAGTC	1 cut(s)	620
PmaCI	CACGTG	2 cut(s)	124, 683
PmlI	CACGTG	2 cut(s)	124, 683
PpsI	GAGTC	1 cut(s)	620
Ppu21I	YACGTR	2 cut(s)	124, 683
PscI	ACATGT	1 cut(s)	585
Psp124BI	GAGCTC	1 cut(s)	277
Psp6I	CCWGG	3 cut(s)	78, 150, 439
PspCI	CACGTG	2 cut(s)	124, 683
PspEI	GGTNACC	1 cut(s)	412
PspGI	CCWGG	3 cut(s)	78, 150, 439
RseI	CAYNNNNRTG	1 cut(s)	548
SacI	GAGCTC	1 cut(s)	277
SaqAI	TTAA	1 cut(s)	703
SatI	GCNGC	1 cut(s)	240
Sau3AI	GATC	2 cut(s)	188, 657
SchI	GAGTC	1 cut(s)	620
ScrFI	CCNGG	3 cut(s)	80, 152, 441
SduI	GDGCHC	1 cut(s)	277
SfaNI	GCATC	1 cut(s)	592
SfuI	TTCGAA	1 cut(s)	365
SmiMI	CAYNNNNRTG	1 cut(s)	548
SphI	GCATGC	1 cut(s)	573
Sse9I	AATT	5 cut(s)	35, 244, 282, 367, 449
SseBI	AGGCCT	1 cut(s)	499
SsiI	CCGC	1 cut(s)	23
SstI	GAGCTC	1 cut(s)	277
StuI	AGGCCT	1 cut(s)	499
StyD4I	CCNGG	3 cut(s)	78, 150, 439
TaaI	ACNGT	2 cut(s)	418, 512
TaiI	ACGT	2 cut(s)	126, 685
TaqI	TCGA	1 cut(s)	365
TasI	AATT	5 cut(s)	35, 244, 282, 367, 449
TfiI	GAWTC	1 cut(s)	234
Tru1I	TTAA	1 cut(s)	703
Tru9I	TTAA	1 cut(s)	703
TscAI	CASTG	2 cut(s)	534, 604
TseFI	GTSAC	3 cut(s)	412, 520, 676
TseI	GCWGC	1 cut(s)	239
Tsp45I	GTSAC	3 cut(s)	412, 520, 676
TspDTI	ATGAA	1 cut(s)	105
TspGWI	ACGGA	1 cut(s)	277
TspRI	CASTG	2 cut(s)	534, 604
XapI	RAATTY	2 cut(s)	244, 282
XceI	RCATGY	3 cut(s)	573, 589, 597
XcmI	CCANNNNNNNNNTGG	1 cut(s)	340
XmnI	GAANNNNTTC	1 cut(s)	499
Zsp2I	ATGCAT	1 cut(s)	571

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.