Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002975

Physical Location & Seq

Genomic Coordinates Forward (+)

59442373 .. 59446809

Gene Structure 4437 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0463300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1440 bp

ATGGGTTCCAGATTCCCATCTCATCAGCTCAGCAATGGTCTCTACGTGTCAGGCAGGCCTGAGCAGCCAAAAGAAAGAGCACCTACAATGGGCTCAACTGCCATGCCCTATACTGGTGGTGATATCAAGAAGTCGGGAGAGCTGGGTAAAATGTTTGATATCCCGTCAATGGATGGCTCCAAATCTAGGAAATCTGGACAATTGACTGGTGCTCCTTCAAGGACCGGATCATTTGGAGGTGCTGCTTCACATTCAGGTCCTATTCCTAATGCTGCTGCTCGTTCTATCTATACCACATCAGGTCCTGTAACTTCTGGAACTGGTTCGGCTTCAATGAAGAAGACTAATTCTGGACCACTCAATAAGCATGGAGAACCTATGAAGAAGTCGTCTGGGCCTCAATCTGGTGGAGTGACACGCCAAAATTCTGGCCAAATACCAGTACTTCCTACAACAGGCCTCATCACATCTGGTCCGATTTCTTCAGGCCCACTAAATTCCTCTGGGGCACCTAGAAAGGTATCTGGACCTTTAGACTCTATGGGATCAATGAAATTACAAGGTTCTGCTATTGTTCACAATCAAGCTGTGACTACTCTCGGCCAAGATGATTATTCTTTCAGAAAGAACTTTCCAAAGACAATATTATGGTCTGTGATACTGATATTTGTGATGGGGTTCATCGCTGGTGGTTTTATTCTTGGAGCAGTCCACAATCCCATACTCCTAGCTGTTGTGGCAATTCTTTTCGCTGGTGTTGCTGCTTTATTCACTTGGAATACTTGTTGGGGAAGAAAAGCTACCACAAATTTCATTGCTCGCTATCCTGATGCTGAGCTTAGAACTGCTAAAAATGGGCAATATGTGAAGGTCTCGGGGGTGGTTACCTGTGGTAATGTGCCCCTCGAATCATCCTTTCGTAGAGTTCCTAGATGCGTTTATACGTCTACAAGTTTGTATGAGTACCGAGGATGGGATTCAAAACCAGCAAATCCTACGCATCGGCGATTTACATGGGGACTTAGATCATCAGAGAGGCATGTAGTGGATTTCTACATCTCTGATTTCCAGTCTGGGTTGAGAGCATTGGTTAAGACTGGCTATGGAACCAAAGTTACTCCTTATGTTGATGAATCCGTCATTATTGATGTGAACCCAGCAAACAAAGACATGTCCCCAGAGTTTGTGAGGTGGTTGGCAGATAGGAATCTTTCAAGTGACGACCGAACAATGCGATTGAAAGAAGGGTACATCAAGGAAGGTAGCACAGTTAGTGTGATGGGAGTTGTCCAGAGAAATGACAACGTGCTTATGATCGTTCCTCCACCTGAGCCATTGACAACTGGATGCCAATGGAGCAGTTGTATCTTTCCAGCTAGCCTTGAGGGTGTTGTTTTGAGATGCGAAGACTCATCAAAAAATGATGCCATACCTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

479

Amino Acids

51.31

Weight (kDa)

9.66

Isoelectric Point (pI)

38.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002975)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32900
fragaria_vesca	FvH4_6g41900 FvH4_6g41900 FvH4_6g41900 FvH4_6g41900 FvH4_6g41900 FvH4_6g41900 FvH4_6g41900 FvH4_6g41900
malus_domestica	MD09G1116200.v1.1 MD17G1107900.v1.1
prunus_persica	Prupe.3G208500_v2.0.a1
pyrus_communis	pycom09g04060 pycom17g10050
rosa_chinensis	RchiOBHm_Chr0c20g0500271 RchiOBHm_Chr1g0340131 RchiOBHm_Chr1g0340141 RchiOBHm_Chr2g0157781
rosa_laevigata	RLG00000021018 RLG00000028993
rosa_multiflora	Rmu_co8468091.1_g000001 Rmu_sc0001275.1_g000033 Rmu_sc0010800.1_g000004 Rmu_sc0018661.1_g000001
rosa_roxburghii	Rroxscaffold_2G00091960 Rroxscaffold_4G00311000
rosa_rugosa	Rorug02G0463300 Rorug02G0463300
rosa_samantha	Rh1AG180900 Rh1CG167700 Rh1DG181000 Rh1DG181100 Rh2AG528800 Rh2BG542700 Rh2CG513100 Rh2DG551700
rosa_wichuraiana	Rw1G015020 Rw2G043720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	508
AccI	GTMKAC	1 cut(s)	947
AclWI	GGATC	2 cut(s)	235, 553
AcoI	YGGCCR	2 cut(s)	430, 601
AcsI	RAATTY	3 cut(s)	424, 496, 808
AcuI	CTGAAG	1 cut(s)	468
AfaI	GTAC	3 cut(s)	444, 965, 1250
AfiI	CCNNNNNNNGG	7 cut(s)	89, 113, 169, 186, 404, 455, 973
AflIII	ACRYGT	2 cut(s)	45, 1170
AgsI	TTSAA	5 cut(s)	219, 333, 981, 1215, 1240
AluBI	AGCT	7 cut(s)	28, 142, 587, 731, 800, 838, 1376
AluI	AGCT	7 cut(s)	28, 142, 587, 731, 800, 838, 1376
Alw21I	GWGCWC	2 cut(s)	82, 214
Alw26I	GTCTC	2 cut(s)	44, 877
AlwI	GGATC	2 cut(s)	235, 553
AlwNI	CAGNNNCTG	1 cut(s)	305
Ama87I	CYCGRG	1 cut(s)	874
AoxI	GGCC	6 cut(s)	56, 395, 430, 457, 487, 601
ApeKI	GCWGC	5 cut(s)	64, 242, 272, 275, 761
ApoI	RAATTY	3 cut(s)	424, 496, 808
Asp700I	GAANNNNTTC	1 cut(s)	322
AspS9I	GGNCC	8 cut(s)	222, 257, 302, 353, 395, 473, 488, 527
AsuHPI	GGTGA	1 cut(s)	131
AsuNHI	GCTAGC	1 cut(s)	1376
AvaI	CYCGRG	1 cut(s)	874
AvaII	GGWCC	6 cut(s)	222, 257, 302, 353, 473, 527
BaeGI	GKGCMC	2 cut(s)	511, 903
BalI	TGGCCA	1 cut(s)	432
BanI	GGYRCC	1 cut(s)	508
BanII	GRGCYC	1 cut(s)	95
BarI	GAAGNNNNNNTAC	2 cut(s)	784, 816
BbsI	GAAGAC	2 cut(s)	347, 1413
Bbv12I	GWGCWC	2 cut(s)	82, 214
BbvI	GCAGC	5 cut(s)	76, 229, 259, 262, 748
BccI	CCATC	5 cut(s)	25, 167, 667, 966, 1273
BcoDI	GTCTC	2 cut(s)	44, 877
BfaI	CTAG	5 cut(s)	186, 513, 728, 930, 1377
BisI	GCNGC	5 cut(s)	65, 243, 273, 276, 762
BlpI	GCTNAGC	2 cut(s)	29, 834
BlsI	GCNGC	5 cut(s)	66, 244, 274, 277, 763
BmcAI	AGTACT	1 cut(s)	444
Bme18I	GGWCC	6 cut(s)	222, 257, 302, 353, 473, 527
BmeT110I	CYCGRG	1 cut(s)	874
BmgT120I	GGNCC	8 cut(s)	222, 257, 302, 353, 395, 473, 488, 527
BmiI	GGNNCC	4 cut(s)	7, 178, 510, 1108
BmsI	GCATC	6 cut(s)	820, 923, 1009, 1337, 1391, 1414
BmtI	GCTAGC	1 cut(s)	1380
BpiI	GAAGAC	2 cut(s)	347, 1413
Bpu10I	CCTNAGC	2 cut(s)	60, 1329
Bpu1102I	GCTNAGC	2 cut(s)	29, 834
BpuEI	CTTGAG	1 cut(s)	1403
BsaAI	YACGTR	1 cut(s)	46
BsaBI	GATNNNNATC	2 cut(s)	16, 1206
BsaI	GGTCTC	2 cut(s)	44, 877
BsaJI	CCNNGG	1 cut(s)	967
BsaWI	WCCGGW	1 cut(s)	224
BsaXI	ACNNNNNCTCC	4 cut(s)	196, 226, 1348, 1378
Bsc4I	CCNNNNNNNGG	7 cut(s)	89, 113, 169, 186, 404, 455, 973
Bse1I	ACTGG	7 cut(s)	118, 211, 325, 440, 1069, 1102, 1348
Bse3DI	GCAATG	2 cut(s)	40, 813
Bse8I	GATNNNNATC	2 cut(s)	16, 1206
BseDI	CCNNGG	1 cut(s)	967
BseGI	GGATG	4 cut(s)	178, 911, 977, 1352
BseJI	GATNNNNATC	2 cut(s)	16, 1206
BseLI	CCNNNNNNNGG	7 cut(s)	89, 113, 169, 186, 404, 455, 973
BseMI	GCAATG	2 cut(s)	40, 813
BseMII	CTCAG	4 cut(s)	43, 51, 825, 1320
BseNI	ACTGG	7 cut(s)	118, 211, 325, 440, 1069, 1102, 1348
BseSI	GKGCMC	2 cut(s)	511, 903
BseXI	GCAGC	5 cut(s)	76, 229, 259, 262, 748
BseYI	CCCAGC	2 cut(s)	142, 1156
Bsh1285I	CGRYCG	1 cut(s)	1225
BshFI	GGCC	6 cut(s)	58, 397, 432, 459, 489, 603
BshNI	GGYRCC	1 cut(s)	508
BsiEI	CGRYCG	1 cut(s)	1225
BsiHKAI	GWGCWC	2 cut(s)	82, 214
BsiHKCI	CYCGRG	1 cut(s)	874
BsiSI	CCGG	1 cut(s)	225
BslFI	GGGAC	2 cut(s)	1032, 1159
BslI	CCNNNNNNNGG	7 cut(s)	89, 113, 169, 186, 404, 455, 973
BsmAI	GTCTC	2 cut(s)	44, 877
BsmFI	GGGAC	2 cut(s)	1032, 1159
BsnI	GGCC	6 cut(s)	58, 397, 432, 459, 489, 603
Bso31I	GGTCTC	2 cut(s)	44, 877
BsoBI	CYCGRG	1 cut(s)	874
Bsp1286I	GDGCHC	5 cut(s)	82, 95, 214, 511, 903
Bsp143I	GATC	4 cut(s)	227, 545, 1025, 1314
Bsp1720I	GCTNAGC	2 cut(s)	29, 834
BspANI	GGCC	6 cut(s)	58, 397, 432, 459, 489, 603
BspCNI	CTCAG	4 cut(s)	42, 52, 826, 1321
BspLI	GGNNCC	4 cut(s)	7, 178, 510, 1108
BspOI	GCTAGC	1 cut(s)	1380
BspPI	GGATC	2 cut(s)	235, 553
BspT107I	GGYRCC	1 cut(s)	508
BspTNI	GGTCTC	2 cut(s)	44, 877
BsrDI	GCAATG	2 cut(s)	40, 813
BsrI	ACTGG	7 cut(s)	118, 211, 325, 440, 1069, 1102, 1348
BssECI	CCNNGG	1 cut(s)	967
BssMI	GATC	4 cut(s)	227, 545, 1025, 1314
Bst4CI	ACNGT	1 cut(s)	1270
BstBAI	YACGTR	1 cut(s)	46
BstC8I	GCNNGC	3 cut(s)	56, 820, 1378
BstDEI	CTNAG	6 cut(s)	29, 60, 834, 839, 1022, 1329
BstEII	GGTNACC	1 cut(s)	883
BstENI	CCTNNNNNAGG	1 cut(s)	453
BstF5I	GGATG	4 cut(s)	178, 911, 977, 1352
BstKTI	GATC	4 cut(s)	230, 548, 1028, 1317
BstMAI	GTCTC	2 cut(s)	44, 877
BstMBI	GATC	4 cut(s)	227, 545, 1025, 1314
BstMCI	CGRYCG	1 cut(s)	1225
BstMWI	GCNNNNNNNGC	4 cut(s)	64, 737, 758, 1356
BstNSI	RCATGY	2 cut(s)	1043, 1174
BstPI	GGTNACC	1 cut(s)	883
BstSLI	GKGCMC	2 cut(s)	511, 903
BstV1I	GCAGC	5 cut(s)	76, 229, 259, 262, 748
BstV2I	GAAGAC	2 cut(s)	347, 1413
BstXI	CCANNNNNNTGG	1 cut(s)	428
BsuRI	GGCC	6 cut(s)	58, 397, 432, 459, 489, 603
BtgZI	GCGATG	1 cut(s)	667
BtsCI	GGATG	4 cut(s)	178, 911, 977, 1352
Cac8I	GCNNGC	3 cut(s)	56, 820, 1378
CaiI	CAGNNNCTG	1 cut(s)	305
Cfr13I	GGNCC	8 cut(s)	222, 257, 302, 353, 395, 473, 488, 527
Csp6I	GTAC	3 cut(s)	443, 964, 1249
CviAII	CATG	5 cut(s)	103, 368, 1014, 1040, 1171
CviQI	GTAC	3 cut(s)	443, 964, 1249
DdeI	CTNAG	6 cut(s)	29, 60, 834, 839, 1022, 1329
DpnI	GATC	4 cut(s)	229, 547, 1027, 1316
DpnII	GATC	4 cut(s)	227, 545, 1025, 1314
EaeI	YGGCCR	2 cut(s)	430, 601
Eco147I	AGGCCT	2 cut(s)	58, 459
Eco24I	GRGCYC	1 cut(s)	95
Eco31I	GGTCTC	2 cut(s)	44, 877
Eco32I	GATATC	2 cut(s)	124, 160
Eco47I	GGWCC	6 cut(s)	222, 257, 302, 353, 473, 527
Eco57I	CTGAAG	1 cut(s)	468
Eco88I	CYCGRG	1 cut(s)	874
Eco91I	GGTNACC	1 cut(s)	883
EcoNI	CCTNNNNNAGG	1 cut(s)	453
EcoO109I	RGGNCCY	2 cut(s)	257, 302
EcoO65I	GGTNACC	1 cut(s)	883
EcoRV	GATATC	2 cut(s)	124, 160
EcoT38I	GRGCYC	1 cut(s)	95
FaeI	CATG	5 cut(s)	106, 371, 1017, 1043, 1174
FaqI	GGGAC	2 cut(s)	1032, 1159
FatI	CATG	5 cut(s)	102, 367, 1013, 1039, 1170
FblI	GTMKAC	1 cut(s)	947
Fnu4HI	GCNGC	5 cut(s)	65, 243, 273, 276, 762
FokI	GGATG	4 cut(s)	185, 898, 984, 1359
FriOI	GRGCYC	1 cut(s)	95
Fsp4HI	GCNGC	5 cut(s)	65, 243, 273, 276, 762
FspBI	CTAG	5 cut(s)	186, 513, 728, 930, 1377
GluI	GCNGC	5 cut(s)	65, 243, 273, 276, 762
GsaI	CCCAGC	2 cut(s)	146, 1160
HaeIII	GGCC	6 cut(s)	58, 397, 432, 459, 489, 603
HapII	CCGG	1 cut(s)	225
Hin1II	CATG	5 cut(s)	106, 371, 1017, 1043, 1174
HinfI	GANTC	7 cut(s)	12, 536, 908, 977, 1133, 1207, 1409
HpaII	CCGG	1 cut(s)	225
HphI	GGTGA	1 cut(s)	131
Hpy166II	GTNNAC	4 cut(s)	577, 712, 948, 1153
Hpy188I	TCNGA	4 cut(s)	477, 623, 1033, 1063
Hpy188III	TCNNGA	9 cut(s)	9, 127, 135, 195, 315, 351, 525, 827, 1291
Hpy8I	GTNNAC	4 cut(s)	577, 712, 948, 1153
HpyAV	CCTTC	4 cut(s)	225, 862, 1238, 1253
HpyCH4III	ACNGT	1 cut(s)	1270
HpyCH4IV	ACGT	3 cut(s)	45, 944, 1305
HpyF10VI	GCNNNNNNNGC	4 cut(s)	64, 737, 758, 1356
HpyF3I	CTNAG	6 cut(s)	29, 60, 834, 839, 1022, 1329
HpySE526I	ACGT	3 cut(s)	45, 944, 1305
Hsp92II	CATG	5 cut(s)	106, 371, 1017, 1043, 1174
Kzo9I	GATC	4 cut(s)	227, 545, 1025, 1314
LmnI	GCTCC	4 cut(s)	182, 217, 704, 1356
Lsp1109I	GCAGC	5 cut(s)	76, 229, 259, 262, 748
LweI	GCATC	6 cut(s)	820, 923, 1009, 1337, 1391, 1414
MaeI	CTAG	5 cut(s)	186, 513, 728, 930, 1377
MaeII	ACGT	3 cut(s)	45, 944, 1305
MaeIII	GTNAC	6 cut(s)	307, 412, 589, 883, 1114, 1217
MalI	GATC	4 cut(s)	229, 547, 1027, 1316
MboI	GATC	4 cut(s)	227, 545, 1025, 1314
MboII	GAAGA	6 cut(s)	349, 352, 394, 474, 804, 1418
MfeI	CAATTG	1 cut(s)	200
MhlI	GDGCHC	5 cut(s)	82, 95, 214, 511, 903
MlsI	TGGCCA	1 cut(s)	432
MluCI	AATT	7 cut(s)	200, 346, 424, 496, 554, 741, 808
MluNI	TGGCCA	1 cut(s)	432
MlyI	GAGTC	2 cut(s)	530, 1403
Mox20I	TGGCCA	1 cut(s)	432
MroXI	GAANNNNTTC	1 cut(s)	322
MscI	TGGCCA	1 cut(s)	432
MseI	TTAA	2 cut(s)	1092, 1438
Msp20I	TGGCCA	1 cut(s)	432
MspI	CCGG	1 cut(s)	225
MunI	CAATTG	1 cut(s)	200
MwoI	GCNNNNNNNGC	4 cut(s)	64, 737, 758, 1356
NdeII	GATC	4 cut(s)	227, 545, 1025, 1314
NheI	GCTAGC	1 cut(s)	1376
NlaIII	CATG	5 cut(s)	106, 371, 1017, 1043, 1174
NlaIV	GGNNCC	4 cut(s)	7, 178, 510, 1108
NmeAIII	GCCGAG	1 cut(s)	579
NmuCI	GTSAC	3 cut(s)	412, 589, 1217
NspI	RCATGY	2 cut(s)	1043, 1174
PceI	AGGCCT	2 cut(s)	58, 459
PciI	ACATGT	1 cut(s)	1170
PdmI	GAANNNNTTC	1 cut(s)	322
PfeI	GAWTC	5 cut(s)	12, 908, 977, 1133, 1207
PkrI	GCNGC	5 cut(s)	66, 244, 274, 277, 763
PleI	GAGTC	2 cut(s)	530, 1403
PpsI	GAGTC	2 cut(s)	530, 1403
Ppu21I	YACGTR	1 cut(s)	46
PpuMI	RGGWCCY	2 cut(s)	257, 302
PscI	ACATGT	1 cut(s)	1170
Psp5II	RGGWCCY	2 cut(s)	257, 302
PspEI	GGTNACC	1 cut(s)	883
PspFI	CCCAGC	2 cut(s)	142, 1156
PspN4I	GGNNCC	4 cut(s)	7, 178, 510, 1108
PspPI	GGNCC	8 cut(s)	222, 257, 302, 353, 395, 473, 488, 527
PspPPI	RGGWCCY	2 cut(s)	257, 302
PsrI	GAACNNNNNNTAC	2 cut(s)	1099, 1131
PstNI	CAGNNNCTG	1 cut(s)	305
RsaI	GTAC	3 cut(s)	444, 965, 1250
RsaNI	GTAC	3 cut(s)	443, 964, 1249
SaqAI	TTAA	2 cut(s)	1092, 1438
SatI	GCNGC	5 cut(s)	65, 243, 273, 276, 762
Sau3AI	GATC	4 cut(s)	227, 545, 1025, 1314
Sau96I	GGNCC	8 cut(s)	222, 257, 302, 353, 395, 473, 488, 527
ScaI	AGTACT	1 cut(s)	444
SchI	GAGTC	2 cut(s)	530, 1403
SduI	GDGCHC	5 cut(s)	82, 95, 214, 511, 903
SfaNI	GCATC	6 cut(s)	820, 923, 1009, 1337, 1391, 1414
SinI	GGWCC	6 cut(s)	222, 257, 302, 353, 473, 527
SmlI	CTYRAG	1 cut(s)	1382
SmoI	CTYRAG	1 cut(s)	1382
Sse9I	AATT	7 cut(s)	200, 346, 424, 496, 554, 741, 808
SseBI	AGGCCT	2 cut(s)	58, 459
SspI	AATATT	1 cut(s)	645
SspMI	CTAG	5 cut(s)	186, 513, 728, 930, 1377
StuI	AGGCCT	2 cut(s)	58, 459
TaaI	ACNGT	1 cut(s)	1270
TaiI	ACGT	3 cut(s)	48, 947, 1308
TaqI	TCGA	1 cut(s)	906
TaqII	GACCGA	1 cut(s)	1239
TasI	AATT	7 cut(s)	200, 346, 424, 496, 554, 741, 808
TatI	WGTACW	1 cut(s)	442
TfiI	GAWTC	5 cut(s)	12, 908, 977, 1133, 1207
Tru1I	TTAA	2 cut(s)	1092, 1438
Tru9I	TTAA	2 cut(s)	1092, 1438
TseFI	GTSAC	3 cut(s)	412, 589, 1217
TseI	GCWGC	5 cut(s)	64, 242, 272, 275, 761
Tsp45I	GTSAC	3 cut(s)	412, 589, 1217
TspDTI	ATGAA	6 cut(s)	350, 395, 566, 670, 802, 1146
TspGWI	ACGGA	1 cut(s)	1126
VpaK11BI	GGWCC	6 cut(s)	222, 257, 302, 353, 473, 527
XagI	CCTNNNNNAGG	1 cut(s)	453
XapI	RAATTY	3 cut(s)	424, 496, 808
XceI	RCATGY	2 cut(s)	1043, 1174
XmiI	GTMKAC	1 cut(s)	947
XmnI	GAANNNNTTC	1 cut(s)	322
XspI	CTAG	5 cut(s)	186, 513, 728, 930, 1377
ZrmI	AGTACT	1 cut(s)	444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.