Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0002975

Physical Location & Seq

Genomic Coordinates Reverse (-)

7756271 .. 7759091

Gene Structure 2821 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g10050.9

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGAAGTTTATTTCAGCATCTGATAACAGAGATAACCAGTTGAGCAAGTTTGCTGAAAATGTCGAGGTTTACTTTGCATCCAGGAAGAAGTCAGAGATCTTGGCAAAAGCCAGAAATCTGCTTCTACAATGTGATTTTTCTGCTCTTCAAGAGTATCCAAGAAATAACAAGAATGATCTGGATGCTGCCAAATCTCCAGAGCTTGTTAACTTGCTATTCCTGTCAGGGAAGTGTGTGGTGTCCAAAGCAGCGATTGAACTAATGAATCTAGTGCACCAGACACTTACGGATGTTTGTGTGTCATCCCCCAGAGTTGCTTTGGAGTTCTATCGGGCTGCTAGGGATGCTCTACTTCTCTATGAAGTCGTGGTTCCTGTCAAGCTAGAAAGGTATCTTGATGGAATCAACCAGGTTGCTGTTCTTATGCAAAATGATTGCCTTTATCTATCTCAGGAGATACTGGGGCTTGCTTTCGAGTATCGCTCAGACTTTCCAAGTTCCCTCAAAGAACATGCTATGTTTGTTGATATGGCTCCAAGATTCCATCTTATGGCGGAGGAAATACTGCAGAGACAAATTCAACATGTTATTCGTAGTTTGAGAGAGGCTCTAGATGGCGCTGATGGATTTCAGAATACCCATGAAAGGCAGCAATTTCAATCTGCAAGTTGGAGTATAGATCAGGTTGTTTTGATTGTGGACAAAGTACGTTTGATATGGGAGCCGATCCTGTTGCCTTCAACTTACAAGAGAAGCATGTGTATGATTCTTGAATCGGTTTTTTCCAAGGTCACAAAAGACATACTCCTTTTAGATGATATGGCAGCAGAAGAAACATTACAGCTTCAAAGTCTGATTCATTTGATGCTGGAGAGCCTAATTTCTTTGCTGGAGTCCCTGGCTGCTCTCCAAGTAGAGAAGTCCCAAGAGGGCATCACTTGCACCCTTGACGATCACATACCTTCGTTATGTAAAATTCGTAAATTGGCAGAATTATTAGATATGCCCTTAAAATATGTCACAACGGCTTGGGAAAGTGGAGAATTGCGCAGTTGTGGTTTTACGTCGTCAGAGGTAGAAGATTTTATCAAGGCCATATTTGCAGATTCACCTTTGAGAAAAGAATGCTTAGCGAGGATCAAAGGCGAATGTCAGAGAAGACGGGAAAACGAGCGTACGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000278 GO:0000775 GO:0000776 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0006810 GO:0006888 GO:0007049 GO:0007059 GO:0007088 GO:0007093 GO:0007094 GO:0007346 GO:0008150 GO:0009987 GO:0010564 GO:0010639 GO:0010948 GO:0010965 GO:0016192 GO:0022402 GO:0030071 GO:0031577 GO:0032991 GO:0033043 GO:0033044 GO:0033045 GO:0033046 GO:0033047 GO:0033048 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045786 GO:0045839 GO:0045841 GO:0045930 GO:0046907 GO:0048193 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051129 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051726 GO:0051783 GO:0051784 GO:0051983 GO:0051985 GO:0065007 GO:0071173 GO:0071174 GO:0098687 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902099 GO:1902100 GO:1903047 GO:1905818 GO:1905819 GO:1990423 GO:2000816 GO:2001251

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zw10

Protein Analysis

394

Amino Acids

44.83

Weight (kDa)

5.39

Isoelectric Point (pI)

53.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002975)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32900
fragaria_vesca	FvH4_6g41900 FvH4_6g41900 FvH4_6g41900 FvH4_6g41900 FvH4_6g41900 FvH4_6g41900 FvH4_6g41900 FvH4_6g41900
malus_domestica	MD09G1116200.v1.1 MD17G1107900.v1.1
prunus_persica	Prupe.3G208500_v2.0.a1
pyrus_communis	pycom09g04060 pycom17g10050
rosa_chinensis	RchiOBHm_Chr0c20g0500271 RchiOBHm_Chr1g0340131 RchiOBHm_Chr1g0340141 RchiOBHm_Chr2g0157781
rosa_laevigata	RLG00000021018 RLG00000028993
rosa_multiflora	Rmu_co8468091.1_g000001 Rmu_sc0001275.1_g000033 Rmu_sc0010800.1_g000004 Rmu_sc0018661.1_g000001
rosa_roxburghii	Rroxscaffold_2G00091960 Rroxscaffold_4G00311000
rosa_rugosa	Rorug02G0463300 Rorug02G0463300
rosa_samantha	Rh1AG180900 Rh1CG167700 Rh1DG181000 Rh1DG181100 Rh2AG528800 Rh2BG542700 Rh2CG513100 Rh2DG551700
rosa_wichuraiana	Rw1G015020 Rw2G043720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1049
AccB7I	CCANNNNNTGG	1 cut(s)	550
AciI	CCGC	1 cut(s)	554
AclWI	GGATC	2 cut(s)	721, 1145
AcsI	RAATTY	2 cut(s)	576, 975
AfaI	GTAC	2 cut(s)	708, 1177
AfiI	CCNNNNNNNGG	2 cut(s)	550, 645
AflIII	ACRYGT	1 cut(s)	583
AgsI	TTSAA	7 cut(s)	149, 257, 581, 659, 741, 773, 848
AjnI	CCWGG	3 cut(s)	80, 408, 897
AluBI	AGCT	3 cut(s)	202, 382, 844
AluI	AGCT	3 cut(s)	202, 382, 844
Alw21I	GWGCWC	1 cut(s)	276
Alw26I	GTCTC	1 cut(s)	565
Alw44I	GTGCAC	1 cut(s)	272
AlwI	GGATC	2 cut(s)	721, 1145
AlwNI	CAGNNNCTG	1 cut(s)	20
AoxI	GGCC	1 cut(s)	1092
ApaLI	GTGCAC	1 cut(s)	272
ApeKI	GCWGC	6 cut(s)	185, 248, 335, 649, 824, 902
ApoI	RAATTY	2 cut(s)	576, 975
AspLEI	GCGC	2 cut(s)	620, 1050
AsuHPI	GGTGA	1 cut(s)	1101
BaeGI	GKGCMC	1 cut(s)	276
BarI	GAAGNNNNNNTAC	2 cut(s)	822, 854
BbsI	GAAGAC	1 cut(s)	1165
Bbv12I	GWGCWC	1 cut(s)	276
BbvI	GCAGC	6 cut(s)	172, 260, 322, 661, 836, 889
BccI	CCATC	4 cut(s)	392, 552, 608, 617
BceAI	ACGGC	1 cut(s)	1041
BcgI	CGANNNNNNTGC	2 cut(s)	715, 749
BciT130I	CCWGG	3 cut(s)	82, 410, 899
BciVI	GTATCC	1 cut(s)	165
BcoDI	GTCTC	1 cut(s)	565
BfaI	CTAG	4 cut(s)	269, 339, 383, 611
BfmI	CTRYAG	1 cut(s)	566
BfoI	RGCGCY	1 cut(s)	621
BfuI	GTATCC	1 cut(s)	165
BglII	AGATCT	1 cut(s)	96
BisI	GCNGC	6 cut(s)	186, 249, 336, 650, 825, 903
BlpI	GCTNAGC	1 cut(s)	1129
BlsI	GCNGC	6 cut(s)	187, 250, 337, 651, 826, 904
Bme1390I	CCNGG	3 cut(s)	82, 410, 899
BmiI	GGNNCC	3 cut(s)	372, 534, 723
BmrFI	CCNGG	3 cut(s)	82, 410, 899
BmrI	ACTGGG	1 cut(s)	470
BmsI	GCATC	6 cut(s)	26, 86, 172, 334, 855, 942
BmuI	ACTGGG	1 cut(s)	470
BpiI	GAAGAC	1 cut(s)	1165
BplI	GAGNNNNNCTC	4 cut(s)	467, 499, 592, 624
BpmI	CTGGAG	3 cut(s)	180, 890, 911
Bpu1102I	GCTNAGC	1 cut(s)	1129
BsaAI	YACGTR	1 cut(s)	1179
BsaJI	CCNNGG	2 cut(s)	786, 897
Bsc4I	CCNNNNNNNGG	2 cut(s)	550, 645
Bse1I	ACTGG	2 cut(s)	37, 465
BseBI	CCWGG	3 cut(s)	82, 410, 899
BseDI	CCNNGG	2 cut(s)	786, 897
BseGI	GGATG	5 cut(s)	77, 187, 295, 302, 349
BseLI	CCNNNNNNNGG	2 cut(s)	550, 645
BseMII	CTCAG	2 cut(s)	464, 498
BseNI	ACTGG	2 cut(s)	37, 465
BseSI	GKGCMC	1 cut(s)	276
BseXI	GCAGC	6 cut(s)	172, 260, 322, 661, 836, 889
BshFI	GGCC	1 cut(s)	1094
BsiHKAI	GWGCWC	1 cut(s)	276
BsiWI	CGTACG	1 cut(s)	1175
BslFI	GGGAC	2 cut(s)	880, 907
BslI	CCNNNNNNNGG	2 cut(s)	550, 645
BsmAI	GTCTC	1 cut(s)	565
BsmFI	GGGAC	2 cut(s)	880, 907
BsmI	GAATGC	1 cut(s)	1130
BsnI	GGCC	1 cut(s)	1094
Bsp1286I	GDGCHC	1 cut(s)	276
Bsp143I	GATC	6 cut(s)	96, 175, 679, 726, 952, 1137
Bsp1720I	GCTNAGC	1 cut(s)	1129
BspACI	CCGC	1 cut(s)	554
BspANI	GGCC	1 cut(s)	1094
BspCNI	CTCAG	2 cut(s)	463, 497
BspLI	GGNNCC	3 cut(s)	372, 534, 723
BspMAI	CTGCAG	1 cut(s)	570
BspPI	GGATC	2 cut(s)	721, 1145
BspQI	GCTCTTC	1 cut(s)	150
BsrI	ACTGG	2 cut(s)	37, 465
BssECI	CCNNGG	2 cut(s)	786, 897
BssMI	GATC	6 cut(s)	96, 175, 679, 726, 952, 1137
BssT1I	CCWWGG	1 cut(s)	786
Bst2UI	CCWGG	3 cut(s)	82, 410, 899
Bst6I	CTCTTC	1 cut(s)	150
BstAPI	GCANNNNNTGC	1 cut(s)	939
BstBAI	YACGTR	1 cut(s)	1179
BstC8I	GCNNGC	1 cut(s)	468
BstDEI	CTNAG	3 cut(s)	450, 484, 1129
BstF5I	GGATG	5 cut(s)	77, 187, 295, 302, 349
BstH2I	RGCGCY	1 cut(s)	621
BstHHI	GCGC	2 cut(s)	620, 1050
BstKTI	GATC	6 cut(s)	99, 178, 682, 729, 955, 1140
BstMAI	GTCTC	1 cut(s)	565
BstMBI	GATC	6 cut(s)	96, 175, 679, 726, 952, 1137
BstMWI	GCNNNNNNNGC	3 cut(s)	344, 939, 1100
BstNI	CCWGG	3 cut(s)	82, 410, 899
BstNSI	RCATGY	3 cut(s)	515, 587, 760
BstSCI	CCNGG	3 cut(s)	80, 408, 897
BstSFI	CTRYAG	1 cut(s)	566
BstSLI	GKGCMC	1 cut(s)	276
BstSNI	TACGTA	1 cut(s)	1179
BstV1I	GCAGC	6 cut(s)	172, 260, 322, 661, 836, 889
BstV2I	GAAGAC	1 cut(s)	1165
BstX2I	RGATCY	1 cut(s)	96
BstYI	RGATCY	1 cut(s)	96
BsuI	GTATCC	1 cut(s)	165
BsuRI	GGCC	1 cut(s)	1094
BtsCI	GGATG	5 cut(s)	77, 187, 295, 302, 349
Cac8I	GCNNGC	1 cut(s)	468
CaiI	CAGNNNCTG	1 cut(s)	20
CfoI	GCGC	2 cut(s)	620, 1050
CsiI	ACCWGGT	1 cut(s)	408
Csp6I	GTAC	2 cut(s)	707, 1176
CviAII	CATG	4 cut(s)	512, 584, 641, 757
CviQI	GTAC	2 cut(s)	707, 1176
DdeI	CTNAG	3 cut(s)	450, 484, 1129
DpnI	GATC	6 cut(s)	98, 177, 681, 728, 954, 1139
DpnII	GATC	6 cut(s)	96, 175, 679, 726, 952, 1137
Eam1104I	CTCTTC	1 cut(s)	150
EarI	CTCTTC	1 cut(s)	150
EciI	GGCGGA	1 cut(s)	569
Eco105I	TACGTA	1 cut(s)	1179
Eco130I	CCWWGG	1 cut(s)	786
EcoRII	CCWGG	3 cut(s)	80, 408, 897
EcoT14I	CCWWGG	1 cut(s)	786
ErhI	CCWWGG	1 cut(s)	786
FaeI	CATG	4 cut(s)	515, 587, 644, 760
FaqI	GGGAC	2 cut(s)	880, 907
FatI	CATG	4 cut(s)	511, 583, 640, 756
Fnu4HI	GCNGC	6 cut(s)	186, 249, 336, 650, 825, 903
FokI	GGATG	5 cut(s)	64, 194, 289, 302, 356
Fsp4HI	GCNGC	6 cut(s)	186, 249, 336, 650, 825, 903
FspBI	CTAG	4 cut(s)	269, 339, 383, 611
FspI	TGCGCA	1 cut(s)	1049
GlaI	GCGC	2 cut(s)	619, 1049
GluI	GCNGC	6 cut(s)	186, 249, 336, 650, 825, 903
GsuI	CTGGAG	3 cut(s)	180, 890, 911
HaeII	RGCGCY	1 cut(s)	621
HaeIII	GGCC	1 cut(s)	1094
HhaI	GCGC	2 cut(s)	620, 1050
Hin1II	CATG	4 cut(s)	515, 587, 644, 760
Hin6I	GCGC	2 cut(s)	618, 1048
HinP1I	GCGC	2 cut(s)	618, 1048
HincII	GTYRAC	1 cut(s)	208
HindII	GTYRAC	1 cut(s)	208
HinfI	GANTC	8 cut(s)	265, 402, 540, 766, 773, 856, 893, 1106
HpaI	GTTAAC	1 cut(s)	208
HphI	GGTGA	1 cut(s)	1101
Hpy166II	GTNNAC	4 cut(s)	70, 208, 274, 700
Hpy188I	TCNGA	7 cut(s)	22, 94, 487, 633, 855, 1072, 1155
Hpy188III	TCNNGA	7 cut(s)	149, 179, 197, 395, 452, 611, 770
Hpy8I	GTNNAC	4 cut(s)	70, 208, 274, 700
Hpy99I	CGWCG	1 cut(s)	1069
HpyAV	CCTTC	2 cut(s)	747, 972
HpyCH4IV	ACGT	3 cut(s)	709, 1064, 1178
HpyCH4V	TGCA	7 cut(s)	77, 274, 427, 568, 665, 942, 1103
HpyF10VI	GCNNNNNNNGC	3 cut(s)	344, 939, 1100
HpyF3I	CTNAG	3 cut(s)	450, 484, 1129
HpySE526I	ACGT	3 cut(s)	709, 1064, 1178
Hsp92II	CATG	4 cut(s)	515, 587, 644, 760
HspAI	GCGC	2 cut(s)	618, 1048
KspAI	GTTAAC	1 cut(s)	208
Kzo9I	GATC	6 cut(s)	96, 175, 679, 726, 952, 1137
LguI	GCTCTTC	1 cut(s)	150
LmnI	GCTCC	2 cut(s)	538, 721
Lsp1109I	GCAGC	6 cut(s)	172, 260, 322, 661, 836, 889
LweI	GCATC	6 cut(s)	26, 86, 172, 334, 855, 942
MabI	ACCWGGT	1 cut(s)	408
MaeI	CTAG	4 cut(s)	269, 339, 383, 611
MaeII	ACGT	3 cut(s)	709, 1064, 1178
MaeIII	GTNAC	2 cut(s)	790, 1018
MalI	GATC	6 cut(s)	98, 177, 681, 728, 954, 1139
MboI	GATC	6 cut(s)	96, 175, 679, 726, 952, 1137
MboII	GAAGA	5 cut(s)	97, 137, 842, 1091, 1170
MflI	RGATCY	1 cut(s)	96
MhlI	GDGCHC	1 cut(s)	276
MluCI	AATT	7 cut(s)	576, 653, 879, 975, 983, 992, 1043
MlyI	GAGTC	1 cut(s)	902
MmeI	TCCRAC	1 cut(s)	650
MnlI	CCTC	7 cut(s)	58, 512, 550, 598, 922, 1066, 1128
MseI	TTAA	2 cut(s)	207, 1010
MslI	CAYNNNNRTG	1 cut(s)	761
MspR9I	CCNGG	3 cut(s)	82, 410, 899
Mva1269I	GAATGC	1 cut(s)	1130
MvaI	CCWGG	3 cut(s)	82, 410, 899
MwoI	GCNNNNNNNGC	3 cut(s)	344, 939, 1100
NdeII	GATC	6 cut(s)	96, 175, 679, 726, 952, 1137
NlaIII	CATG	4 cut(s)	515, 587, 644, 760
NlaIV	GGNNCC	3 cut(s)	372, 534, 723
NmuCI	GTSAC	2 cut(s)	790, 1018
NsbI	TGCGCA	1 cut(s)	1049
NspI	RCATGY	3 cut(s)	515, 587, 760
PciI	ACATGT	1 cut(s)	583
PciSI	GCTCTTC	1 cut(s)	150
PctI	GAATGC	1 cut(s)	1130
PfeI	GAWTC	7 cut(s)	265, 402, 540, 766, 773, 856, 1106
Pfl23II	CGTACG	1 cut(s)	1175
PflMI	CCANNNNNTGG	1 cut(s)	550
PfoI	TCCNGGA	1 cut(s)	80
PkrI	GCNGC	6 cut(s)	187, 250, 337, 651, 826, 904
PleI	GAGTC	1 cut(s)	901
PpsI	GAGTC	1 cut(s)	901
Ppu21I	YACGTR	1 cut(s)	1179
PscI	ACATGT	1 cut(s)	583
Psp6I	CCWGG	3 cut(s)	80, 408, 897
PspGI	CCWGG	3 cut(s)	80, 408, 897
PspLI	CGTACG	1 cut(s)	1175
PspN4I	GGNNCC	3 cut(s)	372, 534, 723
PstI	CTGCAG	1 cut(s)	570
PstNI	CAGNNNCTG	1 cut(s)	20
PsuI	RGATCY	1 cut(s)	96
RsaI	GTAC	2 cut(s)	708, 1177
RsaNI	GTAC	2 cut(s)	707, 1176
RseI	CAYNNNNRTG	1 cut(s)	761
SapI	GCTCTTC	1 cut(s)	150
SaqAI	TTAA	2 cut(s)	207, 1010
SatI	GCNGC	6 cut(s)	186, 249, 336, 650, 825, 903
Sau3AI	GATC	6 cut(s)	96, 175, 679, 726, 952, 1137
SchI	GAGTC	1 cut(s)	902
ScrFI	CCNGG	3 cut(s)	82, 410, 899
SduI	GDGCHC	1 cut(s)	276
SexAI	ACCWGGT	1 cut(s)	408
SfaNI	GCATC	6 cut(s)	26, 86, 172, 334, 855, 942
SfcI	CTRYAG	1 cut(s)	566
SmiMI	CAYNNNNRTG	1 cut(s)	761
SnaBI	TACGTA	1 cut(s)	1179
Sse9I	AATT	7 cut(s)	576, 653, 879, 975, 983, 992, 1043
SsiI	CCGC	1 cut(s)	554
SspMI	CTAG	4 cut(s)	269, 339, 383, 611
StyD4I	CCNGG	3 cut(s)	80, 408, 897
StyI	CCWWGG	1 cut(s)	786
TaiI	ACGT	3 cut(s)	712, 1067, 1181
TaqI	TCGA	2 cut(s)	63, 474
TasI	AATT	7 cut(s)	576, 653, 879, 975, 983, 992, 1043
TfiI	GAWTC	7 cut(s)	265, 402, 540, 766, 773, 856, 1106
Tru1I	TTAA	2 cut(s)	207, 1010
Tru9I	TTAA	2 cut(s)	207, 1010
TseFI	GTSAC	2 cut(s)	790, 1018
TseI	GCWGC	6 cut(s)	185, 248, 335, 649, 824, 902
Tsp45I	GTSAC	2 cut(s)	790, 1018
TspDTI	ATGAA	5 cut(s)	17, 278, 375, 657, 848
TspGWI	ACGGA	1 cut(s)	302
Van91I	CCANNNNNTGG	1 cut(s)	550
VneI	GTGCAC	1 cut(s)	272
XapI	RAATTY	2 cut(s)	576, 975
XbaI	TCTAGA	1 cut(s)	610
XceI	RCATGY	3 cut(s)	515, 587, 760
XcmI	CCANNNNNNNNNTGG	1 cut(s)	316
XspI	CTAG	4 cut(s)	269, 339, 383, 611

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.